HEADER TRANSCRIPTION 21-JUN-19 6PFJ TITLE STRUCTURE OF S. VENEZUELAE RSIG-WHIG-(CI-DI-GMP) COMPLEX, P64 CRYSTAL TITLE 2 FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMFC PROTEIN; COMPND 3 CHAIN: T; COMPND 4 SYNONYM: RSIG; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA POLYMERASE SIGMA FACTOR; COMPND 9 CHAIN: A; COMPND 10 SYNONYM: WHIG; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES VENEZUELAE (STRAIN ATCC 10712 / SOURCE 3 CBS 650.69 / DSM 40230 / JCM 4526 / NBRC 13096 / PD 04745); SOURCE 4 ORGANISM_TAXID: 953739; SOURCE 5 STRAIN: ATCC 10712 / CBS 650.69 / DSM 40230 / JCM 4526 / NBRC 13096 SOURCE 6 / PD 04745; SOURCE 7 GENE: SVEN_3933; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: STREPTOMYCES SP. PANSC19; SOURCE 12 ORGANISM_TAXID: 1520455; SOURCE 13 GENE: EDD98_3685; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SIGMA, ANTI-SIGMA, C-DI-GMP, DEVELOPMENTAL SWITCH, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR M.A.SCHUMACHER REVDAT 4 13-MAR-24 6PFJ 1 REMARK REVDAT 3 19-FEB-20 6PFJ 1 JRNL HETSYN REVDAT 2 18-DEC-19 6PFJ 1 JRNL REVDAT 1 13-NOV-19 6PFJ 0 JRNL AUTH K.A.GALLAGHER,M.A.SCHUMACHER,M.J.BUSH,M.J.BIBB,G.CHANDRA, JRNL AUTH 2 N.A.HOLMES,W.ZENG,M.HENDERSON,H.ZHANG,K.C.FINDLAY, JRNL AUTH 3 R.G.BRENNAN,M.J.BUTTNER JRNL TITL C-DI-GMP ARMS AN ANTI-SIGMA TO CONTROL PROGRESSION OF JRNL TITL 2 MULTICELLULAR DIFFERENTIATION IN STREPTOMYCES. JRNL REF MOL.CELL V. 77 586 2020 JRNL REFN ISSN 1097-2765 JRNL PMID 31810759 JRNL DOI 10.1016/J.MOLCEL.2019.11.006 REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 53003 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.190 REMARK 3 FREE R VALUE TEST SET COUNT : 3283 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 79.8101 - 5.9146 1.00 2248 149 0.1832 0.2414 REMARK 3 2 5.9146 - 4.6947 1.00 2236 157 0.1712 0.1933 REMARK 3 3 4.6947 - 4.1013 1.00 2257 142 0.1387 0.1685 REMARK 3 4 4.1013 - 3.7263 1.00 2247 142 0.1637 0.2392 REMARK 3 5 3.7263 - 3.4592 1.00 2245 150 0.1921 0.2485 REMARK 3 6 3.4592 - 3.2553 1.00 2228 152 0.2013 0.2639 REMARK 3 7 3.2553 - 3.0923 1.00 2257 148 0.2211 0.2709 REMARK 3 8 3.0923 - 2.9576 1.00 2218 146 0.2263 0.2558 REMARK 3 9 2.9576 - 2.8438 1.00 2251 152 0.2072 0.2753 REMARK 3 10 2.8438 - 2.7456 1.00 2283 144 0.1779 0.2198 REMARK 3 11 2.7456 - 2.6598 1.00 2227 138 0.1931 0.2482 REMARK 3 12 2.6598 - 2.5838 1.00 2293 150 0.2004 0.2628 REMARK 3 13 2.5838 - 2.5157 0.99 2186 150 0.2092 0.2487 REMARK 3 14 2.5157 - 2.4543 0.95 2126 147 0.2505 0.2809 REMARK 3 15 2.4543 - 2.3985 1.00 2291 154 0.2023 0.2500 REMARK 3 16 2.3985 - 2.3475 1.00 2219 148 0.2152 0.2248 REMARK 3 17 2.3475 - 2.3005 1.00 2192 138 0.2194 0.2636 REMARK 3 18 2.3005 - 2.2571 0.99 2224 159 0.2514 0.2942 REMARK 3 19 2.2571 - 2.2168 0.94 2116 139 0.2667 0.3204 REMARK 3 20 2.2168 - 2.1792 0.89 2006 132 0.2811 0.3131 REMARK 3 21 2.1792 - 2.1441 0.83 1866 115 0.3695 0.3993 REMARK 3 22 2.1441 - 2.1111 0.79 1787 118 0.3271 0.3747 REMARK 3 23 2.1111 - 2.0800 0.77 1717 113 0.3191 0.3674 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 3046 REMARK 3 ANGLE : 1.277 4142 REMARK 3 CHIRALITY : 0.064 478 REMARK 3 PLANARITY : 0.007 524 REMARK 3 DIHEDRAL : 20.597 1850 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -26.2400 -3.0781 -0.2581 REMARK 3 T TENSOR REMARK 3 T11: 0.3885 T22: 0.3899 REMARK 3 T33: 0.4322 T12: 0.0854 REMARK 3 T13: 0.0112 T23: 0.0341 REMARK 3 L TENSOR REMARK 3 L11: 1.1420 L22: 4.0212 REMARK 3 L33: 1.7391 L12: 1.5407 REMARK 3 L13: -0.5922 L23: -0.6537 REMARK 3 S TENSOR REMARK 3 S11: 0.1924 S12: -0.1255 S13: -0.0025 REMARK 3 S21: -0.2017 S22: -0.2849 S23: 0.1199 REMARK 3 S31: -0.0123 S32: 0.0469 S33: -0.0261 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6PFJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1000242440. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53003 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.080 REMARK 200 RESOLUTION RANGE LOW (A) : 79.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.86900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS BICINE PH 8.5, 0.03 M REMARK 280 SODIUM NITRATE, 0.03 M SODIUM PHOSPHATE, 0.03 M AMMONIUM SULFATE, REMARK 280 9% MPD, 10% PEG 1000, 15% PEG 3350, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.21533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 64.43067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 32.21533 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 64.43067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: T, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY T 24 REMARK 465 SER T 25 REMARK 465 ARG T 26 REMARK 465 PRO T 27 REMARK 465 PRO T 28 REMARK 465 ALA T 29 REMARK 465 GLN T 30 REMARK 465 ARG T 31 REMARK 465 THR T 32 REMARK 465 ALA T 33 REMARK 465 GLU T 34 REMARK 465 SER T 35 REMARK 465 ALA T 36 REMARK 465 LEU T 37 REMARK 465 PRO T 38 REMARK 465 ASP T 39 REMARK 465 ARG T 40 REMARK 465 ALA T 41 REMARK 465 ARG T 42 REMARK 465 PRO T 43 REMARK 465 GLU T 44 REMARK 465 LEU T 45 REMARK 465 GLY T 46 REMARK 465 ALA T 47 REMARK 465 LEU T 48 REMARK 465 ARG T 49 REMARK 465 ALA T 199 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 GLN A 3 REMARK 465 HIS A 4 REMARK 465 THR A 5 REMARK 465 SER A 6 REMARK 465 GLY A 7 REMARK 465 SER A 8 REMARK 465 ASP A 9 REMARK 465 ARG A 10 REMARK 465 ALA A 11 REMARK 465 ALA A 12 REMARK 465 VAL A 13 REMARK 465 PRO A 14 REMARK 465 PRO A 15 REMARK 465 ALA A 16 REMARK 465 ALA A 17 REMARK 465 ARG A 18 REMARK 465 GLY A 19 REMARK 465 THR A 20 REMARK 465 VAL A 21 REMARK 465 ARG A 22 REMARK 465 PRO A 23 REMARK 465 PRO A 24 REMARK 465 VAL A 184 REMARK 465 GLY A 185 REMARK 465 GLY A 186 REMARK 465 GLU A 187 REMARK 465 GLY A 188 REMARK 465 GLY A 189 REMARK 465 ASP A 190 REMARK 465 ARG A 191 REMARK 465 LEU A 192 REMARK 465 SER A 193 REMARK 465 LEU A 194 REMARK 465 MET A 195 REMARK 465 ASP A 196 REMARK 465 THR A 197 REMARK 465 LEU A 198 REMARK 465 GLU A 199 REMARK 465 ASP A 200 REMARK 465 THR A 201 REMARK 465 ALA A 202 REMARK 465 ALA A 203 REMARK 465 ASP A 204 REMARK 465 ASN A 205 REMARK 465 PRO A 206 REMARK 465 VAL A 207 REMARK 465 GLU A 208 REMARK 465 VAL A 209 REMARK 465 ALA A 210 REMARK 465 GLU A 211 REMARK 465 ASP A 212 REMARK 465 ARG A 213 REMARK 465 GLU A 214 REMARK 465 LEU A 215 REMARK 465 VAL A 276 REMARK 465 GLY A 277 REMARK 465 ARG A 278 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU T 101 CG CD OE1 OE2 REMARK 470 VAL T 106 CG1 CG2 REMARK 470 ASP A 92 CG OD1 OD2 REMARK 470 VAL A 93 CG1 CG2 REMARK 470 ARG A 95 CG CD NE CZ NH1 NH2 REMARK 470 ALA A 96 CB REMARK 470 ILE A 97 CD1 REMARK 470 LYS A 98 CG CD CE NZ REMARK 470 ARG A 144 CB CG CD NE CZ NH1 NH2 REMARK 470 HIS A 183 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 216 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 217 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 275 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR A 136 O HOH A 302 1.46 REMARK 500 OE1 GLU T 137 O HOH T 301 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 240 CB GLU A 240 CG -0.116 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP T 90 -76.87 -106.95 REMARK 500 GLU T 92 -165.42 -171.73 REMARK 500 ASP T 142 72.69 -103.57 REMARK 500 ARG A 95 -177.75 -60.28 REMARK 500 GLN A 169 9.42 -67.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C2E T 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C2E T 202 DBREF 6PFJ T 26 199 UNP F2RFR7 F2RFR7_STRVP 26 199 DBREF1 6PFJ A 1 278 UNP A0A3N1Q704_9ACTN DBREF2 6PFJ A A0A3N1Q704 1 278 SEQADV 6PFJ GLY T 24 UNP F2RFR7 EXPRESSION TAG SEQADV 6PFJ SER T 25 UNP F2RFR7 EXPRESSION TAG SEQADV 6PFJ GLY T 91 UNP F2RFR7 PRO 91 ENGINEERED MUTATION SEQADV 6PFJ GLU A 38 UNP A0A3N1Q70 ASP 38 ENGINEERED MUTATION SEQADV 6PFJ THR A 150 UNP A0A3N1Q70 SER 150 ENGINEERED MUTATION SEQADV 6PFJ SER A 159 UNP A0A3N1Q70 THR 159 ENGINEERED MUTATION SEQADV 6PFJ ASP A 162 UNP A0A3N1Q70 GLU 162 ENGINEERED MUTATION SEQRES 1 T 176 GLY SER ARG PRO PRO ALA GLN ARG THR ALA GLU SER ALA SEQRES 2 T 176 LEU PRO ASP ARG ALA ARG PRO GLU LEU GLY ALA LEU ARG SEQRES 3 T 176 LEU PRO GLU LEU ARG THR LEU ARG ARG GLU ALA GLN SER SEQRES 4 T 176 ASP GLU ALA ASP LEU SER TYR VAL ARG ARG MET LEU GLN SEQRES 5 T 176 GLY ARG ILE ASP ILE LEU ARG ALA GLU LEU ALA ARG ARG SEQRES 6 T 176 THR ASP GLY GLU ALA PRO VAL LEU ASP ARG LEU SER GLU SEQRES 7 T 176 ILE LEU ALA ASP VAL PRO SER ARG HIS ARG SER SER ALA SEQRES 8 T 176 ARG HIS VAL THR LEU SER THR PRO ARG GLY GLU GLU TYR SEQRES 9 T 176 ARG ARG LEU ALA ALA GLU MET LEU SER GLU VAL GLU LEU SEQRES 10 T 176 SER ASP LEU THR ALA ARG THR ASP GLU GLU LEU HIS ALA SEQRES 11 T 176 ALA MET GLY ARG LEU ALA GLY TYR GLU GLN GLN ILE SER SEQRES 12 T 176 ARG ARG ARG HIS HIS LEU GLN ARG THR ALA ASP ASP CYS SEQRES 13 T 176 SER ALA GLU ILE ALA ARG ARG TYR ARG GLU GLY GLU ALA SEQRES 14 T 176 GLN VAL ASP ASP LEU LEU ALA SEQRES 1 A 278 MET PRO GLN HIS THR SER GLY SER ASP ARG ALA ALA VAL SEQRES 2 A 278 PRO PRO ALA ALA ARG GLY THR VAL ARG PRO PRO ALA PRO SEQRES 3 A 278 THR SER LEU ASP GLU LEU TRP ARG SER TYR LYS GLU THR SEQRES 4 A 278 GLY ASP GLU ARG LEU ARG GLU GLN LEU ILE LEU HIS TYR SEQRES 5 A 278 SER PRO LEU VAL LYS TYR VAL ALA GLY ARG VAL SER VAL SEQRES 6 A 278 GLY LEU PRO SER ASN VAL GLU GLN ALA ASP PHE VAL SER SEQRES 7 A 278 SER GLY VAL PHE GLY LEU ILE ASP ALA ILE GLU LYS PHE SEQRES 8 A 278 ASP VAL GLU ARG ALA ILE LYS PHE GLU THR TYR ALA ILE SEQRES 9 A 278 THR ARG ILE ARG GLY ALA MET ILE ASP GLU LEU ARG ALA SEQRES 10 A 278 LEU ASP TRP ILE PRO ARG SER VAL ARG GLN LYS ALA ARG SEQRES 11 A 278 ASN VAL GLU ARG ALA TYR ALA THR LEU GLU ALA GLN LEU SEQRES 12 A 278 ARG ARG THR PRO SER GLU THR GLU VAL ALA ALA GLU MET SEQRES 13 A 278 ASP ILE SER LEU GLU ASP LEU HIS ALA VAL PHE SER GLN SEQRES 14 A 278 LEU SER LEU ALA ASN VAL VAL ALA LEU GLU GLU LEU LEU SEQRES 15 A 278 HIS VAL GLY GLY GLU GLY GLY ASP ARG LEU SER LEU MET SEQRES 16 A 278 ASP THR LEU GLU ASP THR ALA ALA ASP ASN PRO VAL GLU SEQRES 17 A 278 VAL ALA GLU ASP ARG GLU LEU ARG ARG LEU LEU ALA ARG SEQRES 18 A 278 ALA ILE ASN THR LEU PRO GLU ARG GLU LYS THR VAL VAL SEQRES 19 A 278 THR LEU TYR TYR TYR GLU GLY LEU THR LEU ALA GLU ILE SEQRES 20 A 278 GLY HIS VAL LEU GLY VAL THR GLU SER ARG VAL SER GLN SEQRES 21 A 278 ILE HIS THR LYS SER VAL LEU GLN LEU ARG ALA LYS LEU SEQRES 22 A 278 ALA ASP VAL GLY ARG HET C2E T 201 68 HET C2E T 202 68 HETNAM C2E 9,9'-[(2R,3R,3AS,5S,7AR,9R,10R,10AS,12S,14AR)-3,5,10, HETNAM 2 C2E 12-TETRAHYDROXY-5,12-DIOXIDOOCTAHYDRO-2H,7H-DIFURO[3, HETNAM 3 C2E 2-D:3',2'-J][1,3,7,9,2, HETNAM 4 C2E 8]TETRAOXADIPHOSPHACYCLODODECINE-2,9-DIYL]BIS(2-AMINO- HETNAM 5 C2E 1,9-DIHYDRO-6H-PURIN-6-ONE) HETSYN C2E C-DI-GMP; CYCLIC DIGUANOSINE MONOPHOSPHATE FORMUL 3 C2E 2(C20 H24 N10 O14 P2) FORMUL 5 HOH *43(H2 O) HELIX 1 AA1 LEU T 50 ASP T 90 1 41 HELIX 2 AA2 PRO T 94 ASP T 97 5 4 HELIX 3 AA3 ARG T 98 ALA T 104 1 7 HELIX 4 AA4 GLY T 124 LEU T 135 1 12 HELIX 5 AA5 GLU T 137 ARG T 146 5 10 HELIX 6 AA6 THR T 147 GLU T 189 1 43 HELIX 7 AA7 GLN T 193 LEU T 198 5 6 HELIX 8 AA8 SER A 28 GLY A 40 1 13 HELIX 9 AA9 ASP A 41 SER A 53 1 13 HELIX 10 AB1 SER A 53 SER A 64 1 12 HELIX 11 AB2 GLU A 72 PHE A 91 1 20 HELIX 12 AB3 LYS A 98 LEU A 118 1 21 HELIX 13 AB4 PRO A 122 ARG A 144 1 23 HELIX 14 AB5 SER A 148 MET A 156 1 9 HELIX 15 AB6 SER A 159 GLN A 169 1 11 HELIX 16 AB7 ASN A 174 LEU A 182 1 9 HELIX 17 AB8 ARG A 217 THR A 225 1 9 HELIX 18 AB9 PRO A 227 TYR A 239 1 13 HELIX 19 AC1 THR A 243 GLY A 252 1 10 HELIX 20 AC2 THR A 254 ALA A 274 1 21 SITE 1 AC1 13 LYS A 57 ARG T 71 GLN T 75 ASP T 79 SITE 2 AC1 13 SER T 108 HIS T 110 SER T 112 GLU T 162 SITE 3 AC1 13 SER T 166 ARG T 169 C2E T 202 HOH T 305 SITE 4 AC1 13 HOH T 310 SITE 1 AC2 19 GLY A 61 ARG A 62 VAL A 65 GLU T 64 SITE 2 AC2 19 SER T 68 ARG T 71 ARG T 72 VAL T 106 SITE 3 AC2 19 SER T 108 SER T 112 ARG T 115 ARG T 169 SITE 4 AC2 19 GLN T 173 ASP T 177 C2E T 201 HOH T 307 SITE 5 AC2 19 HOH T 308 HOH T 309 HOH T 316 CRYST1 92.089 92.089 96.646 90.00 90.00 120.00 P 64 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010859 0.006269 0.000000 0.00000 SCALE2 0.000000 0.012539 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010347 0.00000