HEADER HYDROLASE 21-JUN-19 6PFQ TITLE STRUCTURE OF KLUYVEROMYCES MARXIANUS USB1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN YLR132C; COMPND 3 CHAIN: C, A, B; COMPND 4 SYNONYM: U6 SNRNA PHOSPHODIESTERASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLUYVEROMYCES MARXIANUS (STRAIN DMKU3-1042 / SOURCE 3 BCC 29191 / NBRC 104275); SOURCE 4 ORGANISM_COMMON: YEAST; SOURCE 5 ORGANISM_TAXID: 1003335; SOURCE 6 STRAIN: DMKU3-1042 / BCC 29191 / NBRC 104275; SOURCE 7 GENE: KLMA_50491; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS EXONUCLEASE, U6 SNRNA, 2H PHOSPHODIESTERASE SUPERFAMILY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.NOMURA,E.J.MONTEMAYOR,S.E.BUTCHER REVDAT 3 13-MAR-24 6PFQ 1 REMARK REVDAT 2 20-MAY-20 6PFQ 1 JRNL REVDAT 1 11-DEC-19 6PFQ 0 JRNL AUTH Y.NOMURA,E.J.MONTEMAYOR,J.M.VIRTA,S.M.HAYES,S.E.BUTCHER JRNL TITL STRUCTURAL BASIS FOR THE EVOLUTION OF CYCLIC JRNL TITL 2 PHOSPHODIESTERASE ACTIVITY IN THE U6 SNRNA EXORIBONUCLEASE JRNL TITL 3 USB1. JRNL REF NUCLEIC ACIDS RES. V. 48 1423 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 31832688 JRNL DOI 10.1093/NAR/GKZ1177 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.920 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 153425 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 7681 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 59.6254 - 5.5916 1.00 4898 220 0.2043 0.2369 REMARK 3 2 5.5916 - 4.4386 1.00 4819 277 0.1752 0.1932 REMARK 3 3 4.4386 - 3.8777 1.00 4836 271 0.1625 0.1724 REMARK 3 4 3.8777 - 3.5232 1.00 4898 225 0.1675 0.2011 REMARK 3 5 3.5232 - 3.2707 1.00 4854 261 0.1676 0.1796 REMARK 3 6 3.2707 - 3.0779 1.00 4897 230 0.1693 0.2031 REMARK 3 7 3.0779 - 2.9237 1.00 4870 240 0.1770 0.2290 REMARK 3 8 2.9237 - 2.7964 1.00 4815 287 0.1909 0.2456 REMARK 3 9 2.7964 - 2.6888 1.00 4833 271 0.1876 0.2167 REMARK 3 10 2.6888 - 2.5960 1.00 4866 266 0.1889 0.2249 REMARK 3 11 2.5960 - 2.5148 1.00 4916 218 0.1966 0.2284 REMARK 3 12 2.5148 - 2.4430 1.00 4865 255 0.1881 0.2306 REMARK 3 13 2.4430 - 2.3786 1.00 4798 285 0.1978 0.2424 REMARK 3 14 2.3786 - 2.3206 1.00 4827 299 0.2069 0.2735 REMARK 3 15 2.3206 - 2.2678 1.00 4870 257 0.2042 0.2303 REMARK 3 16 2.2678 - 2.2196 1.00 4922 222 0.2035 0.2522 REMARK 3 17 2.2196 - 2.1752 1.00 4817 253 0.1980 0.2410 REMARK 3 18 2.1752 - 2.1341 1.00 4868 267 0.2062 0.2616 REMARK 3 19 2.1341 - 2.0960 1.00 4861 242 0.2056 0.2339 REMARK 3 20 2.0960 - 2.0605 1.00 4850 244 0.2065 0.2469 REMARK 3 21 2.0605 - 2.0272 1.00 4806 268 0.2195 0.2836 REMARK 3 22 2.0272 - 1.9961 1.00 4824 272 0.2312 0.2572 REMARK 3 23 1.9961 - 1.9667 1.00 4951 240 0.2408 0.2831 REMARK 3 24 1.9667 - 1.9390 1.00 4767 303 0.2620 0.2821 REMARK 3 25 1.9390 - 1.9128 1.00 4866 281 0.2723 0.2906 REMARK 3 26 1.9128 - 1.8879 1.00 4797 275 0.2705 0.2914 REMARK 3 27 1.8879 - 1.8643 1.00 4914 233 0.2806 0.2891 REMARK 3 28 1.8643 - 1.8419 1.00 4816 255 0.2837 0.3578 REMARK 3 29 1.8419 - 1.8205 1.00 4928 241 0.2924 0.2894 REMARK 3 30 1.8205 - 1.8000 1.00 4895 223 0.3056 0.3364 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 5045 REMARK 3 ANGLE : 1.177 6826 REMARK 3 CHIRALITY : 0.119 794 REMARK 3 PLANARITY : 0.008 880 REMARK 3 DIHEDRAL : 3.365 4195 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN C AND RESSEQ 60:275) REMARK 3 ORIGIN FOR THE GROUP (A): 23.2903 0.1217 -5.8656 REMARK 3 T TENSOR REMARK 3 T11: 0.2209 T22: 0.2172 REMARK 3 T33: 0.2144 T12: 0.0199 REMARK 3 T13: -0.0038 T23: 0.0268 REMARK 3 L TENSOR REMARK 3 L11: 0.9001 L22: 1.4650 REMARK 3 L33: 0.8830 L12: -0.6677 REMARK 3 L13: 0.0723 L23: -0.0161 REMARK 3 S TENSOR REMARK 3 S11: -0.1151 S12: -0.0566 S13: 0.0224 REMARK 3 S21: 0.2387 S22: 0.1218 S23: -0.0352 REMARK 3 S31: -0.0445 S32: -0.0163 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 60:275) REMARK 3 ORIGIN FOR THE GROUP (A): 48.5675 -18.8836 -6.3102 REMARK 3 T TENSOR REMARK 3 T11: 0.1676 T22: 0.2140 REMARK 3 T33: 0.1784 T12: 0.0075 REMARK 3 T13: 0.0097 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 0.9927 L22: 2.1247 REMARK 3 L33: 0.5910 L12: 0.4564 REMARK 3 L13: -0.0310 L23: 0.0462 REMARK 3 S TENSOR REMARK 3 S11: -0.0080 S12: -0.0183 S13: 0.0791 REMARK 3 S21: 0.0288 S22: -0.0022 S23: -0.0233 REMARK 3 S31: -0.0012 S32: 0.0758 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN B AND RESSEQ 60:275) REMARK 3 ORIGIN FOR THE GROUP (A): 24.5513 -17.8931 29.6247 REMARK 3 T TENSOR REMARK 3 T11: 0.2256 T22: 0.2496 REMARK 3 T33: 0.2098 T12: 0.0200 REMARK 3 T13: 0.0204 T23: -0.0340 REMARK 3 L TENSOR REMARK 3 L11: 1.3513 L22: 3.3258 REMARK 3 L33: 1.6300 L12: -1.5114 REMARK 3 L13: -0.6956 L23: 2.4501 REMARK 3 S TENSOR REMARK 3 S11: -0.0073 S12: -0.2130 S13: 0.1298 REMARK 3 S21: -0.0332 S22: 0.2423 S23: -0.3802 REMARK 3 S31: 0.0694 S32: 0.2377 S33: 0.0890 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6PFQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1000242307. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80145 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 107.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2 M POTASSIUM SODIUM TARTRATE, 100 REMARK 280 MM HEPES, 30% GLYCEROL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.96350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.95100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.68200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.95100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.96350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.68200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C 58 REMARK 465 VAL C 59 REMARK 465 ALA C 60 REMARK 465 PRO C 199 REMARK 465 VAL C 200 REMARK 465 SER C 201 REMARK 465 MET A 58 REMARK 465 VAL A 59 REMARK 465 MET B 58 REMARK 465 VAL B 59 REMARK 465 ALA B 60 REMARK 465 LYS B 109 REMARK 465 PHE B 110 REMARK 465 GLY B 111 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS C 64 CG CD CE NZ REMARK 470 LYS C 109 CG CD CE NZ REMARK 470 MET C 113 CG SD CE REMARK 470 ARG C 140 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 141 CG CD OE1 NE2 REMARK 470 ARG C 144 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 147 CG CD OE1 OE2 REMARK 470 LYS C 149 CG CD CE NZ REMARK 470 GLU C 192 CG CD OE1 OE2 REMARK 470 ARG C 197 CG CD NE CZ NH1 NH2 REMARK 470 SER C 198 OG REMARK 470 ARG C 202 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 226 CG CD OE1 OE2 REMARK 470 GLN C 231 CG CD OE1 NE2 REMARK 470 LYS C 265 CG CD CE NZ REMARK 470 LYS A 78 CG CD CE NZ REMARK 470 MET A 113 CG SD CE REMARK 470 ARG A 138 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 147 CG CD OE1 OE2 REMARK 470 LYS A 149 CG CD CE NZ REMARK 470 LYS A 185 CG CD CE NZ REMARK 470 ARG A 197 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 226 CG CD OE1 OE2 REMARK 470 ARG A 230 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 231 CG CD OE1 NE2 REMARK 470 LYS B 64 CG CD CE NZ REMARK 470 ARG B 74 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 81 CG CD OE1 NE2 REMARK 470 GLU B 103 CG CD OE1 OE2 REMARK 470 MET B 113 CG SD CE REMARK 470 GLU B 129 CG CD OE1 OE2 REMARK 470 GLU B 133 CG CD OE1 OE2 REMARK 470 GLU B 134 CG CD OE1 OE2 REMARK 470 ARG B 138 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 141 CG CD OE1 NE2 REMARK 470 ARG B 144 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 147 CG CD OE1 OE2 REMARK 470 LYS B 149 CG CD CE NZ REMARK 470 ARG B 197 CG CD NE CZ NH1 NH2 REMARK 470 SER B 198 OG REMARK 470 ARG B 202 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 230 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 247 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 265 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN B 79 O HOH B 401 1.80 REMARK 500 O ASN B 254 O HOH B 401 2.00 REMARK 500 O HOH C 521 O HOH C 541 2.04 REMARK 500 O HOH A 541 O HOH A 543 2.05 REMARK 500 O HOH C 456 O HOH C 544 2.06 REMARK 500 O HOH B 418 O HOH B 502 2.08 REMARK 500 O HOH C 507 O HOH C 543 2.09 REMARK 500 OE1 GLU C 72 O HOH C 401 2.11 REMARK 500 O HOH A 542 O HOH A 547 2.13 REMARK 500 O HOH C 527 O HOH A 541 2.13 REMARK 500 O HOH A 411 O HOH A 520 2.13 REMARK 500 O HOH A 461 O HOH A 474 2.14 REMARK 500 O HOH C 519 O HOH C 529 2.16 REMARK 500 OE2 GLU A 129 O HOH A 401 2.16 REMARK 500 O HOH C 532 O HOH C 537 2.17 REMARK 500 O HOH A 401 O HOH A 567 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 540 O HOH A 563 4445 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL C 62 CG1 - CB - CG2 ANGL. DEV. = 18.2 DEGREES REMARK 500 LEU C 85 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 303 DBREF 6PFQ C 59 275 UNP W0TCJ5 W0TCJ5_KLUMD 57 273 DBREF 6PFQ A 59 275 UNP W0TCJ5 W0TCJ5_KLUMD 57 273 DBREF 6PFQ B 59 275 UNP W0TCJ5 W0TCJ5_KLUMD 57 273 SEQADV 6PFQ MET C 58 UNP W0TCJ5 INITIATING METHIONINE SEQADV 6PFQ PRO C 179 UNP W0TCJ5 GLN 177 CONFLICT SEQADV 6PFQ VAL C 228 UNP W0TCJ5 ILE 226 CONFLICT SEQADV 6PFQ MET A 58 UNP W0TCJ5 INITIATING METHIONINE SEQADV 6PFQ PRO A 179 UNP W0TCJ5 GLN 177 CONFLICT SEQADV 6PFQ VAL A 228 UNP W0TCJ5 ILE 226 CONFLICT SEQADV 6PFQ MET B 58 UNP W0TCJ5 INITIATING METHIONINE SEQADV 6PFQ PRO B 179 UNP W0TCJ5 GLN 177 CONFLICT SEQADV 6PFQ VAL B 228 UNP W0TCJ5 ILE 226 CONFLICT SEQRES 1 C 218 MET VAL ALA PRO VAL SER LYS ASN ILE GLY PHE LEU PHE SEQRES 2 C 218 LEU GLU LEU ARG LEU ASP SER LYS GLN GLN GLN ILE MET SEQRES 3 C 218 ASP LEU VAL LEU LYS GLY VAL ASN ALA VAL MET ASP THR SEQRES 4 C 218 HIS HIS ARG ASN SER PHE GLU PRO LEU HIS ARG GLY LYS SEQRES 5 C 218 PHE GLY ALA MET LYS PRO LEU HIS VAL SER LEU SER GLU SEQRES 6 C 218 THR MET MET PHE ALA ASN GLU SER GLU LEU GLU GLU LYS SEQRES 7 C 218 MET GLY ARG ILE ARG GLN GLU ILE ARG ALA LEU GLU CYS SEQRES 8 C 218 LYS SER VAL PRO VAL ALA LEU SER GLY GLY TRP LEU VAL SEQRES 9 C 218 TYR GLU ASN PHE ASP ALA SER LEU GLN PHE LEU ALA VAL SEQRES 10 C 218 GLY LEU SER GLU PRO ALA ARG GLY ARG LEU LYS PRO VAL SEQRES 11 C 218 LEU SER ILE VAL GLU LYS TYR LYS PRO ARG SER PRO VAL SEQRES 12 C 218 SER ARG GLN PRO VAL GLY LEU ASN ASN LEU HIS VAL SER SEQRES 13 C 218 PHE GLY VAL ALA GLN ASN ALA TYR LEU GLN GLN ASP GLU SEQRES 14 C 218 SER VAL SER ARG GLN ARG LEU ASP SER LEU ARG ASN LEU SEQRES 15 C 218 VAL ALA THR GLU ALA SER ASP ARG LEU PRO LEU LEU ARG SEQRES 16 C 218 ALA ASN LEU GLN PHE ARG CYS HIS GLU LEU LYS ALA LYS SEQRES 17 C 218 VAL GLY THR SER VAL ILE THR LEU PRO LEU SEQRES 1 A 218 MET VAL ALA PRO VAL SER LYS ASN ILE GLY PHE LEU PHE SEQRES 2 A 218 LEU GLU LEU ARG LEU ASP SER LYS GLN GLN GLN ILE MET SEQRES 3 A 218 ASP LEU VAL LEU LYS GLY VAL ASN ALA VAL MET ASP THR SEQRES 4 A 218 HIS HIS ARG ASN SER PHE GLU PRO LEU HIS ARG GLY LYS SEQRES 5 A 218 PHE GLY ALA MET LYS PRO LEU HIS VAL SER LEU SER GLU SEQRES 6 A 218 THR MET MET PHE ALA ASN GLU SER GLU LEU GLU GLU LYS SEQRES 7 A 218 MET GLY ARG ILE ARG GLN GLU ILE ARG ALA LEU GLU CYS SEQRES 8 A 218 LYS SER VAL PRO VAL ALA LEU SER GLY GLY TRP LEU VAL SEQRES 9 A 218 TYR GLU ASN PHE ASP ALA SER LEU GLN PHE LEU ALA VAL SEQRES 10 A 218 GLY LEU SER GLU PRO ALA ARG GLY ARG LEU LYS PRO VAL SEQRES 11 A 218 LEU SER ILE VAL GLU LYS TYR LYS PRO ARG SER PRO VAL SEQRES 12 A 218 SER ARG GLN PRO VAL GLY LEU ASN ASN LEU HIS VAL SER SEQRES 13 A 218 PHE GLY VAL ALA GLN ASN ALA TYR LEU GLN GLN ASP GLU SEQRES 14 A 218 SER VAL SER ARG GLN ARG LEU ASP SER LEU ARG ASN LEU SEQRES 15 A 218 VAL ALA THR GLU ALA SER ASP ARG LEU PRO LEU LEU ARG SEQRES 16 A 218 ALA ASN LEU GLN PHE ARG CYS HIS GLU LEU LYS ALA LYS SEQRES 17 A 218 VAL GLY THR SER VAL ILE THR LEU PRO LEU SEQRES 1 B 218 MET VAL ALA PRO VAL SER LYS ASN ILE GLY PHE LEU PHE SEQRES 2 B 218 LEU GLU LEU ARG LEU ASP SER LYS GLN GLN GLN ILE MET SEQRES 3 B 218 ASP LEU VAL LEU LYS GLY VAL ASN ALA VAL MET ASP THR SEQRES 4 B 218 HIS HIS ARG ASN SER PHE GLU PRO LEU HIS ARG GLY LYS SEQRES 5 B 218 PHE GLY ALA MET LYS PRO LEU HIS VAL SER LEU SER GLU SEQRES 6 B 218 THR MET MET PHE ALA ASN GLU SER GLU LEU GLU GLU LYS SEQRES 7 B 218 MET GLY ARG ILE ARG GLN GLU ILE ARG ALA LEU GLU CYS SEQRES 8 B 218 LYS SER VAL PRO VAL ALA LEU SER GLY GLY TRP LEU VAL SEQRES 9 B 218 TYR GLU ASN PHE ASP ALA SER LEU GLN PHE LEU ALA VAL SEQRES 10 B 218 GLY LEU SER GLU PRO ALA ARG GLY ARG LEU LYS PRO VAL SEQRES 11 B 218 LEU SER ILE VAL GLU LYS TYR LYS PRO ARG SER PRO VAL SEQRES 12 B 218 SER ARG GLN PRO VAL GLY LEU ASN ASN LEU HIS VAL SER SEQRES 13 B 218 PHE GLY VAL ALA GLN ASN ALA TYR LEU GLN GLN ASP GLU SEQRES 14 B 218 SER VAL SER ARG GLN ARG LEU ASP SER LEU ARG ASN LEU SEQRES 15 B 218 VAL ALA THR GLU ALA SER ASP ARG LEU PRO LEU LEU ARG SEQRES 16 B 218 ALA ASN LEU GLN PHE ARG CYS HIS GLU LEU LYS ALA LYS SEQRES 17 B 218 VAL GLY THR SER VAL ILE THR LEU PRO LEU HET GOL C 301 6 HET GOL C 302 6 HET GOL C 303 6 HET GOL C 304 6 HET GOL A 301 6 HET GOL A 302 6 HET GOL A 303 6 HET GOL A 304 6 HET GOL B 301 6 HET GOL B 302 6 HET GOL B 303 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 GOL 11(C3 H8 O3) FORMUL 15 HOH *436(H2 O) HELIX 1 AA1 ASP C 76 HIS C 97 1 22 HELIX 2 AA2 GLY C 108 ALA C 112 5 5 HELIX 3 AA3 ASN C 128 LEU C 146 1 19 HELIX 4 AA4 SER C 177 LYS C 195 1 19 HELIX 5 AA5 GLY C 206 ASN C 209 5 4 HELIX 6 AA6 ASP C 225 ALA C 244 1 20 HELIX 7 AA7 ARG C 247 LEU C 255 1 9 HELIX 8 AA8 ASP A 76 HIS A 97 1 22 HELIX 9 AA9 GLY A 108 ALA A 112 5 5 HELIX 10 AB1 ASN A 128 LEU A 146 1 19 HELIX 11 AB2 SER A 177 LYS A 195 1 19 HELIX 12 AB3 GLY A 206 ASN A 209 5 4 HELIX 13 AB4 ASP A 225 ALA A 244 1 20 HELIX 14 AB5 ARG A 247 LEU A 255 1 9 HELIX 15 AB6 ASP B 76 HIS B 97 1 22 HELIX 16 AB7 ASN B 128 LEU B 146 1 19 HELIX 17 AB8 SER B 177 LYS B 195 1 19 HELIX 18 AB9 ASP B 225 ALA B 244 1 20 HELIX 19 AC1 ARG B 247 LEU B 255 1 9 SHEET 1 AA1 3 LEU C 116 SER C 119 0 SHEET 2 AA1 3 ILE C 66 LEU C 73 -1 N LEU C 73 O LEU C 116 SHEET 3 AA1 3 MET C 124 MET C 125 -1 O MET C 124 N GLY C 67 SHEET 1 AA2 4 LEU C 116 SER C 119 0 SHEET 2 AA2 4 ILE C 66 LEU C 73 -1 N LEU C 73 O LEU C 116 SHEET 3 AA2 4 GLU C 261 VAL C 266 -1 O LYS C 263 N PHE C 70 SHEET 4 AA2 4 SER C 269 PRO C 274 -1 O ILE C 271 N ALA C 264 SHEET 1 AA3 4 GLU C 103 PRO C 104 0 SHEET 2 AA3 4 HIS C 211 GLN C 218 -1 O VAL C 216 N GLU C 103 SHEET 3 AA3 4 LEU C 169 LEU C 176 -1 N LEU C 172 O PHE C 214 SHEET 4 AA3 4 LEU C 155 GLU C 163 -1 N TYR C 162 O PHE C 171 SHEET 1 AA4 2 VAL C 151 VAL C 153 0 SHEET 2 AA4 2 PHE C 257 CYS C 259 -1 O PHE C 257 N VAL C 153 SHEET 1 AA5 3 LEU A 116 SER A 119 0 SHEET 2 AA5 3 ILE A 66 LEU A 73 -1 N LEU A 73 O LEU A 116 SHEET 3 AA5 3 MET A 124 MET A 125 -1 O MET A 124 N GLY A 67 SHEET 1 AA6 4 LEU A 116 SER A 119 0 SHEET 2 AA6 4 ILE A 66 LEU A 73 -1 N LEU A 73 O LEU A 116 SHEET 3 AA6 4 GLU A 261 VAL A 266 -1 O LYS A 263 N PHE A 70 SHEET 4 AA6 4 SER A 269 PRO A 274 -1 O SER A 269 N VAL A 266 SHEET 1 AA7 4 GLU A 103 PRO A 104 0 SHEET 2 AA7 4 HIS A 211 GLN A 218 -1 O VAL A 216 N GLU A 103 SHEET 3 AA7 4 LEU A 169 LEU A 176 -1 N LEU A 172 O PHE A 214 SHEET 4 AA7 4 LEU A 155 GLU A 163 -1 N TYR A 162 O PHE A 171 SHEET 1 AA8 2 VAL A 151 VAL A 153 0 SHEET 2 AA8 2 PHE A 257 CYS A 259 -1 O CYS A 259 N VAL A 151 SHEET 1 AA9 3 LEU B 116 SER B 119 0 SHEET 2 AA9 3 ILE B 66 LEU B 73 -1 N LEU B 73 O LEU B 116 SHEET 3 AA9 3 MET B 124 MET B 125 -1 O MET B 124 N GLY B 67 SHEET 1 AB1 4 LEU B 116 SER B 119 0 SHEET 2 AB1 4 ILE B 66 LEU B 73 -1 N LEU B 73 O LEU B 116 SHEET 3 AB1 4 GLU B 261 VAL B 266 -1 O LYS B 263 N PHE B 70 SHEET 4 AB1 4 SER B 269 PRO B 274 -1 O LEU B 273 N LEU B 262 SHEET 1 AB2 4 GLU B 103 PRO B 104 0 SHEET 2 AB2 4 HIS B 211 GLN B 218 -1 O VAL B 216 N GLU B 103 SHEET 3 AB2 4 LEU B 169 LEU B 176 -1 N LEU B 172 O PHE B 214 SHEET 4 AB2 4 LEU B 155 GLU B 163 -1 N TYR B 162 O PHE B 171 SHEET 1 AB3 2 VAL B 151 VAL B 153 0 SHEET 2 AB3 2 PHE B 257 CYS B 259 -1 O PHE B 257 N VAL B 153 SITE 1 AC1 8 GLU C 163 ASN C 164 PHE C 171 HIS C 211 SITE 2 AC1 8 SER C 213 GOL C 302 HOH C 403 HOH C 409 SITE 1 AC2 8 TYR C 162 GLN C 203 PRO C 204 HIS C 211 SITE 2 AC2 8 GOL C 301 HOH C 403 HOH C 405 HOH C 435 SITE 1 AC3 8 SER A 130 GLY C 89 GLU C 243 ALA C 244 SITE 2 AC3 8 SER C 245 ASP C 246 HOH C 438 HOH C 461 SITE 1 AC4 9 GLU C 72 LEU C 73 ARG C 74 PHE C 257 SITE 2 AC4 9 ARG C 258 CYS C 259 HOH C 406 HOH C 448 SITE 3 AC4 9 HOH C 453 SITE 1 AC5 9 GLU A 163 ASN A 164 PHE A 171 HIS A 211 SITE 2 AC5 9 SER A 213 GOL A 302 HOH A 408 HOH A 410 SITE 3 AC5 9 HOH A 424 SITE 1 AC6 7 TYR A 162 GLU A 163 GLN A 203 HIS A 211 SITE 2 AC6 7 GOL A 301 HOH A 411 HOH A 421 SITE 1 AC7 6 ALA A 241 SER A 245 HOH A 539 HOH A 541 SITE 2 AC7 6 GLN C 218 HOH C 540 SITE 1 AC8 10 ARG A 237 ASN A 238 HOH A 422 HOH A 475 SITE 2 AC8 10 HOH A 482 ALA C 220 LEU C 222 GLN C 223 SITE 3 AC8 10 HOH C 407 HOH C 424 SITE 1 AC9 8 GLU B 163 ASN B 164 PHE B 171 HIS B 211 SITE 2 AC9 8 SER B 213 GOL B 302 HOH B 409 HOH B 433 SITE 1 AD1 9 GLN B 203 PRO B 204 VAL B 205 ASN B 209 SITE 2 AD1 9 HIS B 211 GOL B 301 HOH B 406 HOH B 423 SITE 3 AD1 9 HOH B 433 SITE 1 AD2 6 GLN B 218 ASN B 219 GLN B 223 HOH B 403 SITE 2 AD2 6 ALA C 241 HOH C 432 CRYST1 69.927 107.364 113.902 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014301 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009314 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008779 0.00000