HEADER OXIDOREDUCTASE/INHIBITOR 23-JUN-19 6PG2 TITLE CRYSTAL STRUCTURE OF ECDSBA IN A COMPLEX WITH UNPURIFIED REACTION TITLE 2 PRODUCT H5 (MORPHOLINE 8) COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL:DISULFIDE INTERCHANGE PROTEIN DSBA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: DSBA, DSF, PPFA, B3860, JW3832; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: B0013 KEYWDS DISULFIDE OXIDOREDUCTASE, REDOX PROTEIN, OXIDOREDUCTASE-INHIBITOR KEYWDS 2 COMPLEX, REFILX, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR O.V.ILYICHOVA,M.BENTLEY,B.DOAK,M.J.SCANLON REVDAT 3 11-OCT-23 6PG2 1 REMARK REVDAT 2 11-NOV-20 6PG2 1 JRNL REVDAT 1 06-MAY-20 6PG2 0 JRNL AUTH M.R.BENTLEY,O.V.ILYICHOVA,G.WANG,M.L.WILLIAMS,G.SHARMA, JRNL AUTH 2 W.S.ALWAN,R.L.WHITEHOUSE,B.MOHANTY,P.J.SCAMMELLS,B.HERAS, JRNL AUTH 3 J.L.MARTIN,M.TOTSIKA,B.CAPUANO,B.C.DOAK,M.J.SCANLON JRNL TITL RAPID ELABORATION OF FRAGMENTS INTO LEADS BY X-RAY JRNL TITL 2 CRYSTALLOGRAPHIC SCREENING OF PARALLEL CHEMICAL LIBRARIES JRNL TITL 3 (REFIL X ). JRNL REF J.MED.CHEM. V. 63 6863 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 32529824 JRNL DOI 10.1021/ACS.JMEDCHEM.0C00111 REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3211 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 34112 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1012 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.7200 - 3.6500 0.95 4693 171 0.1484 0.1878 REMARK 3 2 3.6500 - 2.9000 0.97 4664 215 0.1770 0.2028 REMARK 3 3 2.9000 - 2.5300 0.98 4777 167 0.2024 0.2639 REMARK 3 4 2.5300 - 2.3000 0.98 4767 120 0.2156 0.2683 REMARK 3 5 2.3000 - 2.1300 0.98 4737 115 0.2205 0.3123 REMARK 3 6 2.1300 - 2.0100 0.97 4771 107 0.2389 0.2803 REMARK 3 7 2.0100 - 1.9100 0.97 4691 117 0.2647 0.3345 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.237 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3035 REMARK 3 ANGLE : 0.771 4131 REMARK 3 CHIRALITY : 0.046 452 REMARK 3 PLANARITY : 0.005 542 REMARK 3 DIHEDRAL : 5.979 2406 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.3782 -2.8573 1.0418 REMARK 3 T TENSOR REMARK 3 T11: 0.1927 T22: 0.2573 REMARK 3 T33: 0.2153 T12: -0.0432 REMARK 3 T13: -0.0073 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 0.7452 L22: 4.3026 REMARK 3 L33: 3.6289 L12: -0.0160 REMARK 3 L13: 1.1119 L23: 2.8850 REMARK 3 S TENSOR REMARK 3 S11: -0.0164 S12: 0.2117 S13: -0.0157 REMARK 3 S21: -0.3034 S22: 0.0739 S23: -0.0170 REMARK 3 S31: -0.1157 S32: 0.1875 S33: -0.0207 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.5919 1.1731 9.1416 REMARK 3 T TENSOR REMARK 3 T11: 0.1867 T22: 0.2390 REMARK 3 T33: 0.1819 T12: -0.0295 REMARK 3 T13: -0.0175 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: 1.1155 L22: 2.5477 REMARK 3 L33: 2.3914 L12: 0.5040 REMARK 3 L13: 1.2506 L23: 1.6483 REMARK 3 S TENSOR REMARK 3 S11: -0.0907 S12: 0.0872 S13: 0.0143 REMARK 3 S21: -0.0766 S22: 0.0443 S23: 0.0010 REMARK 3 S31: -0.0540 S32: 0.1972 S33: 0.0385 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8047 16.6537 21.3301 REMARK 3 T TENSOR REMARK 3 T11: 0.6837 T22: 0.4682 REMARK 3 T33: 0.4971 T12: 0.2513 REMARK 3 T13: 0.0998 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 3.3715 L22: 3.4431 REMARK 3 L33: 5.8567 L12: 1.4506 REMARK 3 L13: 1.3133 L23: 0.7090 REMARK 3 S TENSOR REMARK 3 S11: 0.2721 S12: 0.2323 S13: 0.4246 REMARK 3 S21: -0.8210 S22: -0.1428 S23: 0.3815 REMARK 3 S31: -1.2750 S32: -0.7620 S33: -0.0526 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 22 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3716 -0.7868 23.4529 REMARK 3 T TENSOR REMARK 3 T11: 0.3251 T22: 0.2286 REMARK 3 T33: 0.3552 T12: -0.0338 REMARK 3 T13: 0.0900 T23: -0.0390 REMARK 3 L TENSOR REMARK 3 L11: 3.0481 L22: 1.5260 REMARK 3 L33: 4.4181 L12: 0.5605 REMARK 3 L13: -0.3238 L23: 1.4631 REMARK 3 S TENSOR REMARK 3 S11: 0.1127 S12: 0.1935 S13: 0.0645 REMARK 3 S21: 0.2608 S22: -0.0728 S23: 0.5503 REMARK 3 S31: -0.0467 S32: -0.2690 S33: 0.0007 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 50 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5459 0.3266 18.0565 REMARK 3 T TENSOR REMARK 3 T11: 0.4072 T22: 0.4396 REMARK 3 T33: 0.5093 T12: -0.0081 REMARK 3 T13: 0.0326 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 2.8239 L22: 2.4633 REMARK 3 L33: 4.4621 L12: -0.6869 REMARK 3 L13: 2.6104 L23: 1.4547 REMARK 3 S TENSOR REMARK 3 S11: 0.5950 S12: -0.2777 S13: 0.5739 REMARK 3 S21: -0.6491 S22: -0.4691 S23: 0.5611 REMARK 3 S31: -0.5192 S32: -0.4743 S33: 0.0245 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 66 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4209 -10.9290 15.7365 REMARK 3 T TENSOR REMARK 3 T11: 0.2675 T22: 0.2818 REMARK 3 T33: 0.2670 T12: -0.0720 REMARK 3 T13: -0.0207 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 5.2844 L22: 2.6392 REMARK 3 L33: 3.0861 L12: 0.0303 REMARK 3 L13: -1.8091 L23: 0.1502 REMARK 3 S TENSOR REMARK 3 S11: 0.1044 S12: -0.1815 S13: -0.0233 REMARK 3 S21: -0.0971 S22: -0.1559 S23: 0.2236 REMARK 3 S31: -0.1786 S32: -0.0537 S33: 0.0861 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 98 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3740 -19.1915 12.8624 REMARK 3 T TENSOR REMARK 3 T11: 0.2694 T22: 0.3190 REMARK 3 T33: 0.3414 T12: -0.0419 REMARK 3 T13: 0.0427 T23: -0.0377 REMARK 3 L TENSOR REMARK 3 L11: 8.5496 L22: 3.5142 REMARK 3 L33: 2.6114 L12: 2.5799 REMARK 3 L13: -0.9770 L23: -0.2011 REMARK 3 S TENSOR REMARK 3 S11: -0.4556 S12: 0.2350 S13: -1.0139 REMARK 3 S21: -0.3209 S22: 0.1422 S23: -0.1564 REMARK 3 S31: 0.1484 S32: -0.3298 S33: 0.2949 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 129 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1305 -2.3472 8.4402 REMARK 3 T TENSOR REMARK 3 T11: 0.5094 T22: 0.6449 REMARK 3 T33: 0.4167 T12: 0.1469 REMARK 3 T13: -0.1120 T23: 0.0659 REMARK 3 L TENSOR REMARK 3 L11: 1.6442 L22: 8.8439 REMARK 3 L33: 1.8641 L12: 1.6560 REMARK 3 L13: -0.4985 L23: -1.4726 REMARK 3 S TENSOR REMARK 3 S11: 0.0162 S12: 0.2927 S13: 0.0887 REMARK 3 S21: -0.9393 S22: -0.1300 S23: 0.6697 REMARK 3 S31: -0.4067 S32: -0.3667 S33: 0.0697 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 145 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4782 9.6467 16.4854 REMARK 3 T TENSOR REMARK 3 T11: 0.5951 T22: 0.4895 REMARK 3 T33: 0.5217 T12: 0.1535 REMARK 3 T13: 0.0820 T23: 0.0150 REMARK 3 L TENSOR REMARK 3 L11: 1.9790 L22: 9.4095 REMARK 3 L33: 9.5845 L12: -3.9543 REMARK 3 L13: -1.6285 L23: 2.6537 REMARK 3 S TENSOR REMARK 3 S11: 0.3447 S12: 0.3838 S13: 0.8446 REMARK 3 S21: -0.9852 S22: -0.2193 S23: 0.2489 REMARK 3 S31: -1.3080 S32: -0.8109 S33: -0.1524 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 162 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.2130 12.4992 27.4864 REMARK 3 T TENSOR REMARK 3 T11: 0.4218 T22: 0.3894 REMARK 3 T33: 0.5401 T12: -0.0562 REMARK 3 T13: 0.1839 T23: 0.0167 REMARK 3 L TENSOR REMARK 3 L11: 1.1610 L22: 7.4503 REMARK 3 L33: 4.5928 L12: 0.2047 REMARK 3 L13: -1.9303 L23: -2.8093 REMARK 3 S TENSOR REMARK 3 S11: -0.0007 S12: -0.0571 S13: 0.1864 REMARK 3 S21: -0.5980 S22: -0.3927 S23: -1.0243 REMARK 3 S31: -0.2495 S32: 1.0729 S33: 0.3542 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 171 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3084 11.0253 30.4777 REMARK 3 T TENSOR REMARK 3 T11: 0.4672 T22: 0.2326 REMARK 3 T33: 0.5571 T12: 0.0146 REMARK 3 T13: 0.2088 T23: -0.0847 REMARK 3 L TENSOR REMARK 3 L11: 5.4670 L22: 3.5869 REMARK 3 L33: 8.5347 L12: 0.4749 REMARK 3 L13: 0.8730 L23: 0.4530 REMARK 3 S TENSOR REMARK 3 S11: 0.2260 S12: -0.0879 S13: 0.4538 REMARK 3 S21: 0.0842 S22: -0.4201 S23: 0.3412 REMARK 3 S31: -0.3007 S32: -0.5377 S33: 0.2848 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6PG2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1000242486. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : DOUBLE SI WITH SAGITTALY BENT REMARK 200 SECOND CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34984 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.910 REMARK 200 RESOLUTION RANGE LOW (A) : 34.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.03800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.55900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1FVK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11-13 % PEG 8000, 5-7.5% GLYCEROL, REMARK 280 100MM NA CACODYLATE PH6.1, 1MM CUCL2, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.83700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.95600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.83700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.95600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 429 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 189 REMARK 465 LYS B 189 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 7 CD CE NZ REMARK 470 LYS A 14 CG CD CE NZ REMARK 470 GLU A 52 CG CD OE1 OE2 REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 GLN A 146 CG CD OE1 NE2 REMARK 470 ARG A 148 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 167 CG OD1 OD2 REMARK 470 GLU B 13 CG CD OE1 OE2 REMARK 470 LYS B 14 CG CD CE NZ REMARK 470 LYS B 47 CG CD CE NZ REMARK 470 LYS B 48 CG CD CE NZ REMARK 470 GLU B 52 CG CD OE1 OE2 REMARK 470 LYS B 55 CG CD CE NZ REMARK 470 LYS B 70 CG CD CE NZ REMARK 470 LYS B 98 CG CD CE NZ REMARK 470 LYS B 118 CG CD CE NZ REMARK 470 PHE B 129 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN B 146 CG CD OE1 NE2 REMARK 470 LYS B 158 CG CD CE NZ REMARK 470 GLN B 164 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 67 O HOH A 301 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 7 -86.30 -104.09 REMARK 500 LYS A 98 -62.50 -95.51 REMARK 500 LYS B 7 -78.62 -91.00 REMARK 500 LYS B 98 -63.66 -105.86 REMARK 500 SER B 169 -71.26 -88.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 1 N REMARK 620 2 ALA B 1 O 73.1 REMARK 620 3 GLU B 4 OE1 160.9 98.5 REMARK 620 4 ASP B 44 OD1 97.1 24.2 74.5 REMARK 620 5 ASP B 44 OD2 99.2 26.0 73.6 4.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue O6Y A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6PBI RELATED DB: PDB REMARK 900 6PBI CONTAINS A CO-CRYSTAL STRUCTURE OF THE SAME PROTEIN AND LIGAND DBREF 6PG2 A 1 189 UNP P0AEG4 DSBA_ECOLI 20 208 DBREF 6PG2 B 1 189 UNP P0AEG4 DSBA_ECOLI 20 208 SEQRES 1 A 189 ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU GLU SEQRES 2 A 189 LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE PHE SEQRES 3 A 189 SER PHE PHE CYS PRO HIS CYS TYR GLN PHE GLU GLU VAL SEQRES 4 A 189 LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO GLU SEQRES 5 A 189 GLY VAL LYS MET THR LYS TYR HIS VAL ASN PHE MET GLY SEQRES 6 A 189 GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA VAL SEQRES 7 A 189 ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL PRO SEQRES 8 A 189 LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SER SEQRES 9 A 189 ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY ILE SEQRES 10 A 189 LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE VAL SEQRES 11 A 189 VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA ALA SEQRES 12 A 189 ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL ASN SEQRES 13 A 189 GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SER SEQRES 14 A 189 ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR VAL SEQRES 15 A 189 LYS TYR LEU SER GLU LYS LYS SEQRES 1 B 189 ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU GLU SEQRES 2 B 189 LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE PHE SEQRES 3 B 189 SER PHE PHE CYS PRO HIS CYS TYR GLN PHE GLU GLU VAL SEQRES 4 B 189 LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO GLU SEQRES 5 B 189 GLY VAL LYS MET THR LYS TYR HIS VAL ASN PHE MET GLY SEQRES 6 B 189 GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA VAL SEQRES 7 B 189 ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL PRO SEQRES 8 B 189 LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SER SEQRES 9 B 189 ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY ILE SEQRES 10 B 189 LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE VAL SEQRES 11 B 189 VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA ALA SEQRES 12 B 189 ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL ASN SEQRES 13 B 189 GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SER SEQRES 14 B 189 ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR VAL SEQRES 15 B 189 LYS TYR LEU SER GLU LYS LYS HET O6Y A 201 25 HET CU B 201 1 HETNAM O6Y 2-METHYL-4-{4-[2-(MORPHOLIN-4-YL)-2- HETNAM 2 O6Y OXOETHYL]PHENOXY}BENZONITRILE HETNAM CU COPPER (II) ION FORMUL 3 O6Y C20 H20 N2 O3 FORMUL 4 CU CU 2+ FORMUL 5 HOH *295(H2 O) HELIX 1 AA1 CYS A 30 VAL A 39 1 10 HELIX 2 AA2 HIS A 41 LEU A 50 1 10 HELIX 3 AA3 GLY A 65 GLY A 83 1 19 HELIX 4 AA4 VAL A 84 LYS A 98 1 15 HELIX 5 AA5 SER A 104 ALA A 115 1 12 HELIX 6 AA6 LYS A 118 ASN A 127 1 10 HELIX 7 AA7 SER A 128 VAL A 145 1 18 HELIX 8 AA8 PRO A 163 MET A 166 5 4 HELIX 9 AA9 ASN A 170 GLU A 187 1 18 HELIX 10 AB1 CYS B 30 VAL B 39 1 10 HELIX 11 AB2 HIS B 41 LEU B 50 1 10 HELIX 12 AB3 GLY B 65 GLY B 83 1 19 HELIX 13 AB4 VAL B 84 LYS B 98 1 15 HELIX 14 AB5 SER B 104 ALA B 115 1 12 HELIX 15 AB6 LYS B 118 ASN B 127 1 10 HELIX 16 AB7 SER B 128 VAL B 145 1 18 HELIX 17 AB8 PRO B 163 MET B 166 5 4 HELIX 18 AB9 ASN B 170 LYS B 188 1 19 SHEET 1 AA1 5 TYR A 9 THR A 11 0 SHEET 2 AA1 5 TYR A 159 LEU A 161 -1 O GLN A 160 N THR A 10 SHEET 3 AA1 5 ALA A 152 VAL A 155 -1 N VAL A 155 O TYR A 159 SHEET 4 AA1 5 VAL A 22 PHE A 26 -1 N PHE A 25 O ALA A 152 SHEET 5 AA1 5 MET A 56 HIS A 60 1 O THR A 57 N GLU A 24 SHEET 1 AA2 5 TYR B 9 THR B 11 0 SHEET 2 AA2 5 TYR B 159 LEU B 161 -1 O GLN B 160 N THR B 10 SHEET 3 AA2 5 ALA B 152 VAL B 155 -1 N MET B 153 O LEU B 161 SHEET 4 AA2 5 VAL B 22 PHE B 26 -1 N LEU B 23 O PHE B 154 SHEET 5 AA2 5 MET B 56 HIS B 60 1 O THR B 57 N GLU B 24 SSBOND 1 CYS A 30 CYS A 33 1555 1555 2.13 SSBOND 2 CYS B 30 CYS B 33 1555 1555 2.05 LINK N ALA B 1 CU CU B 201 1555 1555 2.47 LINK O ALA B 1 CU CU B 201 1555 1555 2.15 LINK OE1 GLU B 4 CU CU B 201 1555 1555 2.04 LINK OD1 ASP B 44 CU CU B 201 1555 4546 2.27 LINK OD2 ASP B 44 CU CU B 201 1555 4546 2.41 CISPEP 1 VAL A 150 PRO A 151 0 -1.99 CISPEP 2 VAL B 150 PRO B 151 0 -4.39 SITE 1 AC1 7 HIS A 32 GLN A 35 GLY A 149 VAL A 150 SITE 2 AC1 7 PRO A 163 GLN A 164 PHE B 29 SITE 1 AC2 3 ALA B 1 GLU B 4 ASP B 44 CRYST1 117.674 63.912 74.455 90.00 125.69 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008498 0.000000 0.006105 0.00000 SCALE2 0.000000 0.015647 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016537 0.00000