HEADER SIGNALING PROTEIN/INHIBITOR 24-JUN-19 6PGP TITLE CRYSTAL STRUCTURE OF HUMAN KRAS G12C COVALENTLY BOUND TO A TITLE 2 QUINAZOLINONE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE KRAS; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: K-RAS 2,KI-RAS,C-K-RAS,C-KI-RAS; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 VARIANT: VAR_006839 G12C; SOURCE 6 GENE: KRAS, KRAS2, RASK2; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS INHIBITOR, GTPASE, SIGNALING PROTEIN, SIGNALING PROTEIN-INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.MOHR,D.A.WHITTINGTON REVDAT 2 22-JAN-20 6PGP 1 JRNL REVDAT 1 25-DEC-19 6PGP 0 JRNL AUTH B.A.LANMAN,J.R.ALLEN,J.G.ALLEN,A.K.AMEGADZIE,K.S.ASHTON, JRNL AUTH 2 S.K.BOOKER,J.J.CHEN,N.CHEN,M.J.FROHN,G.GOODMAN,D.J.KOPECKY, JRNL AUTH 3 L.LIU,P.LOPEZ,J.D.LOW,V.MA,A.E.MINATTI,T.T.NGUYEN, JRNL AUTH 4 N.NISHIMURA,A.J.PICKRELL,A.B.REED,Y.SHIN,A.C.SIEGMUND, JRNL AUTH 5 N.A.TAMAYO,C.M.TEGLEY,M.C.WALTON,H.L.WANG,R.P.WURZ,M.XUE, JRNL AUTH 6 K.C.YANG,P.ACHANTA,M.D.BARTBERGER,J.CANON,L.S.HOLLIS, JRNL AUTH 7 J.D.MCCARTER,C.MOHR,K.REX,A.Y.SAIKI,T.SAN MIGUEL,L.P.VOLAK, JRNL AUTH 8 K.H.WANG,D.A.WHITTINGTON,S.G.ZECH,J.R.LIPFORD,V.J.CEE JRNL TITL DISCOVERY OF A COVALENT INHIBITOR OF KRASG12C(AMG 510) FOR JRNL TITL 2 THE TREATMENT OF SOLID TUMORS. JRNL REF J.MED.CHEM. V. 63 52 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 31820981 JRNL DOI 10.1021/ACS.JMEDCHEM.9B01180 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 85.5 REMARK 3 NUMBER OF REFLECTIONS : 39365 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2095 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1487 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 43.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.3450 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2709 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 138 REMARK 3 SOLVENT ATOMS : 308 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : -0.06000 REMARK 3 B13 (A**2) : 0.02000 REMARK 3 B23 (A**2) : 0.11000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.105 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.099 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.052 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2921 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2723 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3951 ; 1.186 ; 2.019 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6197 ; 0.695 ; 3.004 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 342 ; 5.125 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 138 ;35.929 ;24.493 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 513 ;12.782 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;13.055 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 431 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3237 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 631 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1356 ; 0.903 ; 1.700 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1355 ; 0.902 ; 1.698 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1693 ; 1.558 ; 2.540 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1694 ; 1.558 ; 2.543 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1565 ; 1.028 ; 1.881 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1564 ; 1.028 ; 1.881 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2254 ; 1.713 ; 2.763 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3684 ; 4.060 ;14.905 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3545 ; 3.875 ;14.486 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6PGP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1000242507. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41460 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.0 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03800 REMARK 200 FOR THE DATA SET : 12.6700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 46.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.48100 REMARK 200 FOR SHELL : 1.550 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM ACETATE, 25% PEG 3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 LYS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 ASP A -4 REMARK 465 GLU A -3 REMARK 465 VAL A -2 REMARK 465 ASP A -1 REMARK 465 GLY A 0 REMARK 465 MET B -13 REMARK 465 LYS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 ASP B -4 REMARK 465 GLU B -3 REMARK 465 VAL B -2 REMARK 465 ASP B -1 REMARK 465 GLY B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 59 -136.48 -149.26 REMARK 500 SER A 122 52.76 -91.10 REMARK 500 ALA B 59 -132.33 -147.06 REMARK 500 LYS B 117 34.55 72.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 GDP A 501 O2B 87.1 REMARK 620 3 HOH A 608 O 81.4 91.4 REMARK 620 4 HOH A 615 O 90.5 85.1 171.3 REMARK 620 5 HOH A 641 O 89.8 170.2 97.3 85.7 REMARK 620 6 HOH A 642 O 173.7 87.9 94.9 92.9 95.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 63 OE1 REMARK 620 2 GLU A 63 OE2 54.6 REMARK 620 3 GLY A 138 O 48.3 10.4 REMARK 620 4 HOH A 601 O 125.2 71.9 80.3 REMARK 620 5 HOH A 749 O 155.4 149.9 155.1 78.9 REMARK 620 6 HOH A 633 O 90.1 91.1 83.1 102.7 88.3 REMARK 620 7 HOH A 733 O 79.0 133.3 125.2 154.4 76.5 83.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 17 OG REMARK 620 2 GDP B 501 O1B 85.3 REMARK 620 3 HOH B 610 O 89.7 82.7 REMARK 620 4 HOH B 617 O 79.6 94.0 169.0 REMARK 620 5 HOH B 620 O 173.6 89.1 92.6 97.8 REMARK 620 6 HOH B 648 O 90.5 168.8 87.0 95.4 95.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 63 OE1 REMARK 620 2 GLU B 63 OE2 54.6 REMARK 620 3 GLY B 138 O 51.1 8.2 REMARK 620 4 HOH B 606 O 126.8 77.0 83.4 REMARK 620 5 HOH B 719 O 154.4 151.0 153.6 76.7 REMARK 620 6 HOH B 721 O 90.1 93.1 85.8 115.3 87.2 REMARK 620 7 HOH B 651 O 77.5 132.0 128.2 142.8 77.0 89.0 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OHY A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide OHY B 504 and CYS B REMARK 800 12 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide OHY B 504 and CYS B REMARK 800 12 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6PGO RELATED DB: PDB DBREF 6PGP A 1 169 UNP P01116 RASK_HUMAN 1 169 DBREF 6PGP B 1 169 UNP P01116 RASK_HUMAN 1 169 SEQADV 6PGP MET A -13 UNP P01116 EXPRESSION TAG SEQADV 6PGP LYS A -12 UNP P01116 EXPRESSION TAG SEQADV 6PGP HIS A -11 UNP P01116 EXPRESSION TAG SEQADV 6PGP HIS A -10 UNP P01116 EXPRESSION TAG SEQADV 6PGP HIS A -9 UNP P01116 EXPRESSION TAG SEQADV 6PGP HIS A -8 UNP P01116 EXPRESSION TAG SEQADV 6PGP HIS A -7 UNP P01116 EXPRESSION TAG SEQADV 6PGP HIS A -6 UNP P01116 EXPRESSION TAG SEQADV 6PGP HIS A -5 UNP P01116 EXPRESSION TAG SEQADV 6PGP ASP A -4 UNP P01116 EXPRESSION TAG SEQADV 6PGP GLU A -3 UNP P01116 EXPRESSION TAG SEQADV 6PGP VAL A -2 UNP P01116 EXPRESSION TAG SEQADV 6PGP ASP A -1 UNP P01116 EXPRESSION TAG SEQADV 6PGP GLY A 0 UNP P01116 EXPRESSION TAG SEQADV 6PGP CYS A 12 UNP P01116 GLY 12 VARIANT SEQADV 6PGP SER A 51 UNP P01116 CYS 51 ENGINEERED MUTATION SEQADV 6PGP LEU A 80 UNP P01116 CYS 80 ENGINEERED MUTATION SEQADV 6PGP SER A 118 UNP P01116 CYS 118 ENGINEERED MUTATION SEQADV 6PGP MET B -13 UNP P01116 EXPRESSION TAG SEQADV 6PGP LYS B -12 UNP P01116 EXPRESSION TAG SEQADV 6PGP HIS B -11 UNP P01116 EXPRESSION TAG SEQADV 6PGP HIS B -10 UNP P01116 EXPRESSION TAG SEQADV 6PGP HIS B -9 UNP P01116 EXPRESSION TAG SEQADV 6PGP HIS B -8 UNP P01116 EXPRESSION TAG SEQADV 6PGP HIS B -7 UNP P01116 EXPRESSION TAG SEQADV 6PGP HIS B -6 UNP P01116 EXPRESSION TAG SEQADV 6PGP HIS B -5 UNP P01116 EXPRESSION TAG SEQADV 6PGP ASP B -4 UNP P01116 EXPRESSION TAG SEQADV 6PGP GLU B -3 UNP P01116 EXPRESSION TAG SEQADV 6PGP VAL B -2 UNP P01116 EXPRESSION TAG SEQADV 6PGP ASP B -1 UNP P01116 EXPRESSION TAG SEQADV 6PGP GLY B 0 UNP P01116 EXPRESSION TAG SEQADV 6PGP CYS B 12 UNP P01116 GLY 12 VARIANT SEQADV 6PGP SER B 51 UNP P01116 CYS 51 ENGINEERED MUTATION SEQADV 6PGP LEU B 80 UNP P01116 CYS 80 ENGINEERED MUTATION SEQADV 6PGP SER B 118 UNP P01116 CYS 118 ENGINEERED MUTATION SEQRES 1 A 183 MET LYS HIS HIS HIS HIS HIS HIS HIS ASP GLU VAL ASP SEQRES 2 A 183 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA CYS SEQRES 3 A 183 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 4 A 183 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 5 A 183 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR SER SEQRES 6 A 183 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 7 A 183 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 8 A 183 PHE LEU LEU VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 9 A 183 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 10 A 183 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 11 A 183 LYS SER ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 12 A 183 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 13 A 183 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 14 A 183 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 15 A 183 LYS SEQRES 1 B 183 MET LYS HIS HIS HIS HIS HIS HIS HIS ASP GLU VAL ASP SEQRES 2 B 183 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA CYS SEQRES 3 B 183 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 4 B 183 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 5 B 183 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR SER SEQRES 6 B 183 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 7 B 183 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 8 B 183 PHE LEU LEU VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 9 B 183 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 10 B 183 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 11 B 183 LYS SER ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 12 B 183 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 13 B 183 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 14 B 183 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 15 B 183 LYS HET GDP A 501 28 HET CA A 502 1 HET CA A 503 1 HET OHY A 504 39 HET GDP B 501 28 HET CA B 502 1 HET CA B 503 1 HET OHY B 504 39 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM CA CALCIUM ION HETNAM OHY 6-CHLORO-7-(2-FLUORO-6-HYDROXYPHENYL)-4-(4- HETNAM 2 OHY PROPANOYLPIPERAZIN-1-YL)-1-[2-(PROPAN-2-YL) HETNAM 3 OHY PHENYL]QUINAZOLIN-2(1H)-ONE FORMUL 3 GDP 2(C10 H15 N5 O11 P2) FORMUL 4 CA 4(CA 2+) FORMUL 6 OHY 2(C30 H30 CL F N4 O3) FORMUL 11 HOH *308(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 SER A 65 GLY A 75 1 11 HELIX 3 AA3 ASN A 86 LYS A 104 1 19 HELIX 4 AA4 ASP A 126 GLY A 138 1 13 HELIX 5 AA5 GLY A 151 LYS A 169 1 19 HELIX 6 AA6 GLY B 15 ASN B 26 1 12 HELIX 7 AA7 SER B 65 THR B 74 1 10 HELIX 8 AA8 ASN B 86 ASP B 105 1 20 HELIX 9 AA9 ASP B 126 GLY B 138 1 13 HELIX 10 AB1 GLY B 151 GLU B 168 1 18 SHEET 1 AA1 6 ASP A 38 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 ASP A 57 -1 O ILE A 55 N TYR A 40 SHEET 3 AA1 6 THR A 2 VAL A 9 1 N LEU A 6 O LEU A 56 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O VAL A 81 N VAL A 9 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 PHE A 141 GLU A 143 1 O ILE A 142 N LEU A 113 SHEET 1 AA2 6 ASP B 38 ILE B 46 0 SHEET 2 AA2 6 GLU B 49 ASP B 57 -1 O ILE B 55 N TYR B 40 SHEET 3 AA2 6 THR B 2 VAL B 9 1 N VAL B 8 O LEU B 56 SHEET 4 AA2 6 GLY B 77 ALA B 83 1 O VAL B 81 N VAL B 9 SHEET 5 AA2 6 MET B 111 ASN B 116 1 O VAL B 114 N LEU B 80 SHEET 6 AA2 6 PHE B 141 GLU B 143 1 O ILE B 142 N LEU B 113 LINK SG ACYS A 12 C27 OHY A 504 1555 1555 1.81 LINK SG BCYS A 12 C27 OHY A 504 1555 1555 1.81 LINK OG SER A 17 CA CA A 502 1555 1555 2.32 LINK OE1 GLU A 63 CA CA A 503 1555 1555 2.35 LINK OE2 GLU A 63 CA CA A 503 1555 1555 2.34 LINK SG ACYS B 12 C27 OHY B 504 1555 1555 1.81 LINK SG BCYS B 12 C27 OHY B 504 1555 1555 1.81 LINK OG SER B 17 CA CA B 502 1555 1555 2.31 LINK OE1 GLU B 63 CA CA B 503 1555 1555 2.35 LINK OE2 GLU B 63 CA CA B 503 1555 1555 2.34 LINK O2B GDP A 501 CA CA A 502 1555 1555 2.31 LINK CA CA A 502 O HOH A 608 1555 1555 2.33 LINK CA CA A 502 O HOH A 615 1555 1555 2.39 LINK CA CA A 502 O HOH A 641 1555 1555 2.36 LINK CA CA A 502 O HOH A 642 1555 1555 2.30 LINK O1B GDP B 501 CA CA B 502 1555 1555 2.31 LINK CA CA B 502 O HOH B 610 1555 1555 2.40 LINK CA CA B 502 O HOH B 617 1555 1555 2.34 LINK CA CA B 502 O HOH B 620 1555 1555 2.18 LINK CA CA B 502 O HOH B 648 1555 1555 2.29 LINK O GLY A 138 CA CA A 503 1555 1655 2.27 LINK O GLY B 138 CA CA B 503 1555 1455 2.30 LINK CA CA A 503 O HOH A 601 1555 1455 2.53 LINK CA CA A 503 O HOH A 749 1555 1455 2.45 LINK CA CA A 503 O HOH A 633 1555 1455 2.41 LINK CA CA A 503 O HOH A 733 1555 1455 2.36 LINK CA CA B 503 O HOH B 606 1555 1655 2.45 LINK CA CA B 503 O HOH B 719 1555 1655 2.49 LINK CA CA B 503 O HOH B 721 1555 1655 2.67 LINK CA CA B 503 O HOH B 651 1555 1655 2.50 SITE 1 AC1 25 GLY A 13 VAL A 14 GLY A 15 LYS A 16 SITE 2 AC1 25 SER A 17 ALA A 18 PHE A 28 VAL A 29 SITE 3 AC1 25 ASP A 30 ASN A 116 LYS A 117 ASP A 119 SITE 4 AC1 25 LEU A 120 SER A 145 ALA A 146 LYS A 147 SITE 5 AC1 25 CA A 502 HOH A 615 HOH A 623 HOH A 634 SITE 6 AC1 25 HOH A 640 HOH A 642 HOH A 707 HOH A 718 SITE 7 AC1 25 HOH A 720 SITE 1 AC2 6 SER A 17 GDP A 501 HOH A 608 HOH A 615 SITE 2 AC2 6 HOH A 641 HOH A 642 SITE 1 AC3 6 GLU A 63 GLY A 138 HOH A 601 HOH A 633 SITE 2 AC3 6 HOH A 733 HOH A 749 SITE 1 AC4 17 VAL A 9 GLY A 10 CYS A 12 LYS A 16 SITE 2 AC4 17 PRO A 34 GLY A 60 GLU A 62 ARG A 68 SITE 3 AC4 17 ASP A 69 MET A 72 HIS A 95 TYR A 96 SITE 4 AC4 17 HOH A 630 HOH A 631 HOH A 642 HIS B 95 SITE 5 AC4 17 GLN B 99 SITE 1 AC5 26 GLY B 13 VAL B 14 GLY B 15 LYS B 16 SITE 2 AC5 26 SER B 17 ALA B 18 PHE B 28 VAL B 29 SITE 3 AC5 26 ASP B 30 ASN B 116 LYS B 117 ASP B 119 SITE 4 AC5 26 LEU B 120 SER B 145 ALA B 146 LYS B 147 SITE 5 AC5 26 CA B 502 HOH B 610 HOH B 620 HOH B 622 SITE 6 AC5 26 HOH B 624 HOH B 659 HOH B 674 HOH B 679 SITE 7 AC5 26 HOH B 691 HOH B 693 SITE 1 AC6 6 SER B 17 GDP B 501 HOH B 610 HOH B 617 SITE 2 AC6 6 HOH B 620 HOH B 648 SITE 1 AC7 6 GLU B 63 GLY B 138 HOH B 606 HOH B 651 SITE 2 AC7 6 HOH B 719 HOH B 721 SITE 1 AC8 23 HIS A 95 GLN A 99 GLY B 10 ALA B 11 SITE 2 AC8 23 GLY B 13 VAL B 14 LYS B 16 PRO B 34 SITE 3 AC8 23 ALA B 59 GLY B 60 GLU B 62 ARG B 68 SITE 4 AC8 23 ASP B 69 MET B 72 HIS B 95 TYR B 96 SITE 5 AC8 23 GLN B 99 HOH B 612 HOH B 620 HOH B 633 SITE 6 AC8 23 HOH B 662 HOH B 671 HOH B 677 SITE 1 AC9 23 HIS A 95 GLN A 99 GLY B 10 ALA B 11 SITE 2 AC9 23 GLY B 13 VAL B 14 LYS B 16 PRO B 34 SITE 3 AC9 23 ALA B 59 GLY B 60 GLU B 62 ARG B 68 SITE 4 AC9 23 ASP B 69 MET B 72 HIS B 95 TYR B 96 SITE 5 AC9 23 GLN B 99 HOH B 612 HOH B 620 HOH B 633 SITE 6 AC9 23 HOH B 662 HOH B 671 HOH B 677 CRYST1 33.420 39.606 62.451 76.91 81.38 77.30 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029922 -0.006745 -0.003252 0.00000 SCALE2 0.000000 0.025882 -0.005299 0.00000 SCALE3 0.000000 0.000000 0.016532 0.00000