HEADER SIGNALING PROTEIN 24-JUN-19 6PGS TITLE CRYSTAL STRUCTURE OF BOVINE OPSIN WITH GERANIOL BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHODOPSIN; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: G ALPHA CT2 PEPTIDE; COMPND 6 CHAIN: B; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 8 ORGANISM_COMMON: BOVINE; SOURCE 9 ORGANISM_TAXID: 9913 KEYWDS OLFACTORY RECEPTOR, ODORANT, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.T.EGER,T.MORIZUMI,O.P.ERNST REVDAT 3 11-OCT-23 6PGS 1 REMARK HETSYN REVDAT 2 29-JUL-20 6PGS 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 01-JUL-20 6PGS 0 JRNL AUTH T.MORIZUMI,K.KUROI,B.T.EGER,W.L.OU,N.VAN EPS,H.TSUKAMOTO, JRNL AUTH 2 Y.FURUTANI,O.P.ERNST JRNL TITL ODORANT-BINDING SITE IN VISUAL OPSIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 27336 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1382 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.2060 - 6.2432 0.98 2652 143 0.2134 0.2263 REMARK 3 2 6.2432 - 4.9619 0.98 2583 138 0.2168 0.2408 REMARK 3 3 4.9619 - 4.3365 0.99 2626 138 0.1788 0.1931 REMARK 3 4 4.3365 - 3.9409 1.00 2598 123 0.1912 0.2292 REMARK 3 5 3.9409 - 3.6589 1.00 2600 143 0.2059 0.2490 REMARK 3 6 3.6589 - 3.4434 1.00 2593 139 0.2181 0.2443 REMARK 3 7 3.4434 - 3.2712 1.00 2605 136 0.2265 0.2136 REMARK 3 8 3.2712 - 3.1289 1.00 2590 137 0.2353 0.2647 REMARK 3 9 3.1289 - 3.0086 1.00 2561 157 0.2838 0.3182 REMARK 3 10 3.0086 - 2.9050 0.99 2546 128 0.2977 0.3279 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2880 REMARK 3 ANGLE : 0.552 3918 REMARK 3 CHIRALITY : 0.037 445 REMARK 3 PLANARITY : 0.005 475 REMARK 3 DIHEDRAL : 11.384 1736 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:139) REMARK 3 ORIGIN FOR THE GROUP (A): 20.0057 41.9460 39.9464 REMARK 3 T TENSOR REMARK 3 T11: 0.3231 T22: 0.2896 REMARK 3 T33: 0.4763 T12: 0.0349 REMARK 3 T13: -0.0587 T23: 0.0671 REMARK 3 L TENSOR REMARK 3 L11: 1.6851 L22: 1.6807 REMARK 3 L33: 1.4471 L12: 0.3080 REMARK 3 L13: -0.2502 L23: -0.8208 REMARK 3 S TENSOR REMARK 3 S11: 0.0019 S12: 0.1176 S13: 0.1216 REMARK 3 S21: -0.1541 S22: -0.0123 S23: -0.2830 REMARK 3 S31: -0.0905 S32: -0.0275 S33: 0.0017 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 140:168) REMARK 3 ORIGIN FOR THE GROUP (A): 7.1392 26.1284 24.6333 REMARK 3 T TENSOR REMARK 3 T11: 0.8814 T22: 0.5133 REMARK 3 T33: 0.6036 T12: -0.1375 REMARK 3 T13: -0.0784 T23: -0.0418 REMARK 3 L TENSOR REMARK 3 L11: 2.2155 L22: 0.7213 REMARK 3 L33: 0.0756 L12: 0.1630 REMARK 3 L13: -0.3283 L23: -0.0167 REMARK 3 S TENSOR REMARK 3 S11: -0.2197 S12: 0.7855 S13: -0.7377 REMARK 3 S21: -0.7180 S22: 0.0119 S23: 0.4322 REMARK 3 S31: 0.5499 S32: -0.4233 S33: -0.1577 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 169:222) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5181 49.6536 30.3163 REMARK 3 T TENSOR REMARK 3 T11: 0.6145 T22: 0.4397 REMARK 3 T33: 0.6576 T12: -0.0504 REMARK 3 T13: -0.1757 T23: 0.2086 REMARK 3 L TENSOR REMARK 3 L11: 0.9820 L22: 0.0090 REMARK 3 L33: 1.2185 L12: -0.0435 REMARK 3 L13: -0.2531 L23: 0.1424 REMARK 3 S TENSOR REMARK 3 S11: -0.3753 S12: 0.2761 S13: 0.9497 REMARK 3 S21: -0.4709 S22: 0.2567 S23: 0.2795 REMARK 3 S31: -0.5331 S32: 0.0761 S33: -0.1416 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 223:287) REMARK 3 ORIGIN FOR THE GROUP (A): -1.6994 35.0682 41.8995 REMARK 3 T TENSOR REMARK 3 T11: 0.4268 T22: 0.5028 REMARK 3 T33: 0.5166 T12: 0.0064 REMARK 3 T13: -0.1259 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 2.1732 L22: 1.5307 REMARK 3 L33: 2.6547 L12: -1.8053 REMARK 3 L13: -0.3527 L23: -0.1304 REMARK 3 S TENSOR REMARK 3 S11: -0.0942 S12: 0.1054 S13: 0.2920 REMARK 3 S21: -0.2426 S22: -0.0154 S23: 0.4239 REMARK 3 S31: -0.1079 S32: -0.3563 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 288:326) REMARK 3 ORIGIN FOR THE GROUP (A): 13.3600 27.3978 46.7527 REMARK 3 T TENSOR REMARK 3 T11: 0.6005 T22: 0.4162 REMARK 3 T33: 0.6620 T12: -0.0268 REMARK 3 T13: -0.0769 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.4593 L22: 0.2458 REMARK 3 L33: 0.4507 L12: 0.0977 REMARK 3 L13: 0.4521 L23: 0.2686 REMARK 3 S TENSOR REMARK 3 S11: -0.3195 S12: 0.0305 S13: -0.3565 REMARK 3 S21: 0.5708 S22: 0.2826 S23: -0.1787 REMARK 3 S31: 0.1437 S32: -0.1181 S33: -0.0168 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 340:344) REMARK 3 ORIGIN FOR THE GROUP (A): -2.8196 13.8654 37.4781 REMARK 3 T TENSOR REMARK 3 T11: 1.1497 T22: 0.9661 REMARK 3 T33: 1.8410 T12: -0.1058 REMARK 3 T13: -0.1022 T23: 0.1186 REMARK 3 L TENSOR REMARK 3 L11: 0.0041 L22: 0.0149 REMARK 3 L33: 0.0189 L12: 0.0062 REMARK 3 L13: -0.0029 L23: -0.0154 REMARK 3 S TENSOR REMARK 3 S11: -0.5730 S12: 0.2080 S13: -0.2480 REMARK 3 S21: -0.8088 S22: 0.0592 S23: -0.0484 REMARK 3 S31: 0.4173 S32: 0.5237 S33: -0.0007 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 345:350) REMARK 3 ORIGIN FOR THE GROUP (A): 1.6151 16.8151 40.1431 REMARK 3 T TENSOR REMARK 3 T11: 0.9277 T22: 0.8998 REMARK 3 T33: 1.4181 T12: -0.2117 REMARK 3 T13: 0.0317 T23: -0.0351 REMARK 3 L TENSOR REMARK 3 L11: 0.0091 L22: 0.0250 REMARK 3 L33: 0.0132 L12: 0.0121 REMARK 3 L13: 0.0006 L23: -0.0141 REMARK 3 S TENSOR REMARK 3 S11: 0.1956 S12: -0.1699 S13: 0.1419 REMARK 3 S21: -0.2119 S22: 0.6898 S23: 0.1221 REMARK 3 S31: 0.2866 S32: 0.3768 S33: 0.0005 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6PGS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1000242502. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27357 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.890 REMARK 200 RESOLUTION RANGE LOW (A) : 97.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.70 REMARK 200 R MERGE FOR SHELL (I) : 1.01900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4J4Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 84.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 7.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.1-3.3M AMMONIUM SULFATE, 0.1M SODIUM REMARK 280 ACETATE BUFFER, PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 121.95950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 70.41335 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 36.57733 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 121.95950 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 70.41335 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 36.57733 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 121.95950 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 70.41335 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 36.57733 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 121.95950 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 70.41335 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 36.57733 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 121.95950 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 70.41335 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 36.57733 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 121.95950 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 70.41335 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 36.57733 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 140.82670 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 73.15467 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 140.82670 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 73.15467 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 140.82670 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 73.15467 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 140.82670 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 73.15467 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 140.82670 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 73.15467 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 140.82670 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 73.15467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 327 REMARK 465 LEU A 328 REMARK 465 GLY A 329 REMARK 465 ASP A 330 REMARK 465 ASP A 331 REMARK 465 GLU A 332 REMARK 465 ALA A 333 REMARK 465 SER A 334 REMARK 465 THR A 335 REMARK 465 THR A 336 REMARK 465 VAL A 337 REMARK 465 SER A 338 REMARK 465 LYS A 339 REMARK 465 THR A 340 REMARK 465 GLU A 341 REMARK 465 THR A 342 REMARK 465 SER A 343 REMARK 465 GLN A 344 REMARK 465 VAL A 345 REMARK 465 ALA A 346 REMARK 465 PRO A 347 REMARK 465 ALA A 348 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 15 O5 NAG C 1 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 15 31.22 -97.73 REMARK 500 GLN A 28 50.88 -109.48 REMARK 500 ARG A 69 59.30 -92.84 REMARK 500 LYS A 141 71.29 51.42 REMARK 500 CYS A 167 -32.18 -132.88 REMARK 500 SER A 176 -166.40 62.95 REMARK 500 HIS A 195 95.95 -34.79 REMARK 500 PHE A 212 -49.65 -146.67 REMARK 500 GLN A 237 53.49 -152.80 REMARK 500 THR A 277 -70.75 -74.61 REMARK 500 THR A 289 67.26 -105.20 REMARK 500 ILE A 290 -23.74 -142.09 REMARK 500 ILE A 307 -58.01 -120.89 REMARK 500 CYS A 322 43.60 -94.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NWE RELATED DB: PDB REMARK 900 RELATED ID: 6PEL RELATED DB: PDB REMARK 900 RELATED ID: 6PH7 RELATED DB: PDB DBREF 6PGS A 1 348 UNP P02699 OPSD_BOVIN 1 348 DBREF 6PGS B 340 350 PDB 6PGS 6PGS 340 350 SEQRES 1 A 348 MET ASN GLY THR GLU GLY PRO ASN PHE TYR VAL PRO PHE SEQRES 2 A 348 SER ASN LYS THR GLY VAL VAL ARG SER PRO PHE GLU ALA SEQRES 3 A 348 PRO GLN TYR TYR LEU ALA GLU PRO TRP GLN PHE SER MET SEQRES 4 A 348 LEU ALA ALA TYR MET PHE LEU LEU ILE MET LEU GLY PHE SEQRES 5 A 348 PRO ILE ASN PHE LEU THR LEU TYR VAL THR VAL GLN HIS SEQRES 6 A 348 LYS LYS LEU ARG THR PRO LEU ASN TYR ILE LEU LEU ASN SEQRES 7 A 348 LEU ALA VAL ALA ASP LEU PHE MET VAL PHE GLY GLY PHE SEQRES 8 A 348 THR THR THR LEU TYR THR SER LEU HIS GLY TYR PHE VAL SEQRES 9 A 348 PHE GLY PRO THR GLY CYS ASN LEU GLU GLY PHE PHE ALA SEQRES 10 A 348 THR LEU GLY GLY GLU ILE ALA LEU TRP SER LEU VAL VAL SEQRES 11 A 348 LEU ALA ILE GLU ARG TYR VAL VAL VAL CYS LYS PRO MET SEQRES 12 A 348 SER ASN PHE ARG PHE GLY GLU ASN HIS ALA ILE MET GLY SEQRES 13 A 348 VAL ALA PHE THR TRP VAL MET ALA LEU ALA CYS ALA ALA SEQRES 14 A 348 PRO PRO LEU VAL GLY TRP SER ARG TYR ILE PRO GLU GLY SEQRES 15 A 348 MET GLN CYS SER CYS GLY ILE ASP TYR TYR THR PRO HIS SEQRES 16 A 348 GLU GLU THR ASN ASN GLU SER PHE VAL ILE TYR MET PHE SEQRES 17 A 348 VAL VAL HIS PHE ILE ILE PRO LEU ILE VAL ILE PHE PHE SEQRES 18 A 348 CYS TYR GLY GLN LEU VAL PHE THR VAL LYS GLU ALA ALA SEQRES 19 A 348 ALA GLN GLN GLN GLU SER ALA THR THR GLN LYS ALA GLU SEQRES 20 A 348 LYS GLU VAL THR ARG MET VAL ILE ILE MET VAL ILE ALA SEQRES 21 A 348 PHE LEU ILE CYS TRP LEU PRO TYR ALA GLY VAL ALA PHE SEQRES 22 A 348 TYR ILE PHE THR HIS GLN GLY SER ASP PHE GLY PRO ILE SEQRES 23 A 348 PHE MET THR ILE PRO ALA PHE PHE ALA LYS THR SER ALA SEQRES 24 A 348 VAL TYR ASN PRO VAL ILE TYR ILE MET MET ASN LYS GLN SEQRES 25 A 348 PHE ARG ASN CYS MET VAL THR THR LEU CYS CYS GLY LYS SEQRES 26 A 348 ASN PRO LEU GLY ASP ASP GLU ALA SER THR THR VAL SER SEQRES 27 A 348 LYS THR GLU THR SER GLN VAL ALA PRO ALA SEQRES 1 B 11 ILE LEU GLU ASN LEU LYS ASP VAL GLY LEU PHE HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET BMA C 4 11 HET BOG A 401 20 HET PLM A 402 17 HET 64Z A 403 11 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM BOG OCTYL BETA-D-GLUCOPYRANOSIDE HETNAM PLM PALMITIC ACID HETNAM 64Z GERANIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN BOG BETA-OCTYLGLUCOSIDE; OCTYL BETA-D-GLUCOSIDE; OCTYL D- HETSYN 2 BOG GLUCOSIDE; OCTYL GLUCOSIDE FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 4 BOG C14 H28 O6 FORMUL 5 PLM C16 H32 O2 FORMUL 6 64Z C10 H18 O HELIX 1 AA1 GLU A 33 HIS A 65 1 33 HELIX 2 AA2 LYS A 66 ARG A 69 5 4 HELIX 3 AA3 THR A 70 LEU A 72 5 3 HELIX 4 AA4 ASN A 73 GLY A 89 1 17 HELIX 5 AA5 GLY A 90 GLY A 101 1 12 HELIX 6 AA6 PHE A 105 LYS A 141 1 37 HELIX 7 AA7 GLY A 149 ALA A 169 1 21 HELIX 8 AA8 PRO A 170 VAL A 173 5 4 HELIX 9 AA9 HIS A 195 THR A 198 5 4 HELIX 10 AB1 ASN A 199 HIS A 211 1 13 HELIX 11 AB2 PHE A 212 GLN A 236 1 25 HELIX 12 AB3 SER A 240 HIS A 278 1 39 HELIX 13 AB4 GLY A 284 THR A 289 1 6 HELIX 14 AB5 ILE A 290 THR A 297 1 8 HELIX 15 AB6 THR A 297 ILE A 307 1 11 HELIX 16 AB7 ASN A 310 CYS A 322 1 13 HELIX 17 AB8 LEU B 341 VAL B 347 1 7 SHEET 1 AA1 2 THR A 4 GLU A 5 0 SHEET 2 AA1 2 TYR A 10 VAL A 11 -1 O VAL A 11 N THR A 4 SHEET 1 AA2 2 TYR A 178 PRO A 180 0 SHEET 2 AA2 2 CYS A 187 ILE A 189 -1 O GLY A 188 N ILE A 179 SSBOND 1 CYS A 110 CYS A 187 1555 1555 2.03 LINK ND2 ASN A 15 C1 NAG C 1 1555 1555 1.43 LINK SG CYS A 323 C1 PLM A 402 1555 1555 1.63 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.44 LINK O3 BMA C 3 C1 BMA C 4 1555 1555 1.43 CRYST1 243.919 243.919 109.732 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004100 0.002367 0.000000 0.00000 SCALE2 0.000000 0.004734 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009113 0.00000