data_6PGV # _entry.id 6PGV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.320 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6PGV WWPDB D_1000242513 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6PGV _pdbx_database_status.recvd_initial_deposition_date 2019-06-24 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Grasty, K.C.' 1 ? 'Weeks, S.D.' 2 ? 'Loll, P.J.' 3 0000-0001-5416-4500 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Struct.Biol. _citation.journal_id_ASTM JSBIEM _citation.journal_id_CSD 0803 _citation.journal_id_ISSN 1095-8657 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 3 _citation.language ? _citation.page_first 100011 _citation.page_last ? _citation.title 'Structural insights into the activity and regulation of human Josephin-2' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.yjsbx.2019.100011 _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Grasty, K.C.' 1 ? primary 'Weeks, S.D.' 2 ? primary 'Loll, P.J.' 3 0000-0001-5416-4500 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 6PGV _cell.details ? _cell.formula_units_Z ? _cell.length_a 102.120 _cell.length_a_esd ? _cell.length_b 102.120 _cell.length_b_esd ? _cell.length_c 92.200 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PGV _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Josephin-2 20872.689 1 3.4.19.12 ? ? ? 2 polymer man Polyubiquitin-B 8519.778 1 ? ? ? ? 3 non-polymer syn ETHANAMINE 45.084 1 ? ? ? ? 4 water nat water 18.015 24 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Josephin domain-containing protein 2' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes ;(MSE)SQAPGAQPSPPTVYHERQRLELCAVHALNNVLQQQLFSQEAADEICKRLAPDSRLNPHRSLLGTGNYDVNVI (MSE)AALQGLGLAAVWWDRRRPLSQLALPQVLGLILNLPSPVSLGLLSLPLRRRHWVALRQVDGVYYNLDSKLRAPEAL GDEDGVRAFLAAALAQGLCEVLLVVTKEVEEKGSWLRTD ; ;MSQAPGAQPSPPTVYHERQRLELCAVHALNNVLQQQLFSQEAADEICKRLAPDSRLNPHRSLLGTGNYDVNVIMAALQGL GLAAVWWDRRRPLSQLALPQVLGLILNLPSPVSLGLLSLPLRRRHWVALRQVDGVYYNLDSKLRAPEALGDEDGVRAFLA AALAQGLCEVLLVVTKEVEEKGSWLRTD ; A ? 2 'polypeptide(L)' no no MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 SER n 1 3 GLN n 1 4 ALA n 1 5 PRO n 1 6 GLY n 1 7 ALA n 1 8 GLN n 1 9 PRO n 1 10 SER n 1 11 PRO n 1 12 PRO n 1 13 THR n 1 14 VAL n 1 15 TYR n 1 16 HIS n 1 17 GLU n 1 18 ARG n 1 19 GLN n 1 20 ARG n 1 21 LEU n 1 22 GLU n 1 23 LEU n 1 24 CYS n 1 25 ALA n 1 26 VAL n 1 27 HIS n 1 28 ALA n 1 29 LEU n 1 30 ASN n 1 31 ASN n 1 32 VAL n 1 33 LEU n 1 34 GLN n 1 35 GLN n 1 36 GLN n 1 37 LEU n 1 38 PHE n 1 39 SER n 1 40 GLN n 1 41 GLU n 1 42 ALA n 1 43 ALA n 1 44 ASP n 1 45 GLU n 1 46 ILE n 1 47 CYS n 1 48 LYS n 1 49 ARG n 1 50 LEU n 1 51 ALA n 1 52 PRO n 1 53 ASP n 1 54 SER n 1 55 ARG n 1 56 LEU n 1 57 ASN n 1 58 PRO n 1 59 HIS n 1 60 ARG n 1 61 SER n 1 62 LEU n 1 63 LEU n 1 64 GLY n 1 65 THR n 1 66 GLY n 1 67 ASN n 1 68 TYR n 1 69 ASP n 1 70 VAL n 1 71 ASN n 1 72 VAL n 1 73 ILE n 1 74 MSE n 1 75 ALA n 1 76 ALA n 1 77 LEU n 1 78 GLN n 1 79 GLY n 1 80 LEU n 1 81 GLY n 1 82 LEU n 1 83 ALA n 1 84 ALA n 1 85 VAL n 1 86 TRP n 1 87 TRP n 1 88 ASP n 1 89 ARG n 1 90 ARG n 1 91 ARG n 1 92 PRO n 1 93 LEU n 1 94 SER n 1 95 GLN n 1 96 LEU n 1 97 ALA n 1 98 LEU n 1 99 PRO n 1 100 GLN n 1 101 VAL n 1 102 LEU n 1 103 GLY n 1 104 LEU n 1 105 ILE n 1 106 LEU n 1 107 ASN n 1 108 LEU n 1 109 PRO n 1 110 SER n 1 111 PRO n 1 112 VAL n 1 113 SER n 1 114 LEU n 1 115 GLY n 1 116 LEU n 1 117 LEU n 1 118 SER n 1 119 LEU n 1 120 PRO n 1 121 LEU n 1 122 ARG n 1 123 ARG n 1 124 ARG n 1 125 HIS n 1 126 TRP n 1 127 VAL n 1 128 ALA n 1 129 LEU n 1 130 ARG n 1 131 GLN n 1 132 VAL n 1 133 ASP n 1 134 GLY n 1 135 VAL n 1 136 TYR n 1 137 TYR n 1 138 ASN n 1 139 LEU n 1 140 ASP n 1 141 SER n 1 142 LYS n 1 143 LEU n 1 144 ARG n 1 145 ALA n 1 146 PRO n 1 147 GLU n 1 148 ALA n 1 149 LEU n 1 150 GLY n 1 151 ASP n 1 152 GLU n 1 153 ASP n 1 154 GLY n 1 155 VAL n 1 156 ARG n 1 157 ALA n 1 158 PHE n 1 159 LEU n 1 160 ALA n 1 161 ALA n 1 162 ALA n 1 163 LEU n 1 164 ALA n 1 165 GLN n 1 166 GLY n 1 167 LEU n 1 168 CYS n 1 169 GLU n 1 170 VAL n 1 171 LEU n 1 172 LEU n 1 173 VAL n 1 174 VAL n 1 175 THR n 1 176 LYS n 1 177 GLU n 1 178 VAL n 1 179 GLU n 1 180 GLU n 1 181 LYS n 1 182 GLY n 1 183 SER n 1 184 TRP n 1 185 LEU n 1 186 ARG n 1 187 THR n 1 188 ASP n 2 1 MET n 2 2 GLN n 2 3 ILE n 2 4 PHE n 2 5 VAL n 2 6 LYS n 2 7 THR n 2 8 LEU n 2 9 THR n 2 10 GLY n 2 11 LYS n 2 12 THR n 2 13 ILE n 2 14 THR n 2 15 LEU n 2 16 GLU n 2 17 VAL n 2 18 GLU n 2 19 PRO n 2 20 SER n 2 21 ASP n 2 22 THR n 2 23 ILE n 2 24 GLU n 2 25 ASN n 2 26 VAL n 2 27 LYS n 2 28 ALA n 2 29 LYS n 2 30 ILE n 2 31 GLN n 2 32 ASP n 2 33 LYS n 2 34 GLU n 2 35 GLY n 2 36 ILE n 2 37 PRO n 2 38 PRO n 2 39 ASP n 2 40 GLN n 2 41 GLN n 2 42 ARG n 2 43 LEU n 2 44 ILE n 2 45 PHE n 2 46 ALA n 2 47 GLY n 2 48 LYS n 2 49 GLN n 2 50 LEU n 2 51 GLU n 2 52 ASP n 2 53 GLY n 2 54 ARG n 2 55 THR n 2 56 LEU n 2 57 SER n 2 58 ASP n 2 59 TYR n 2 60 ASN n 2 61 ILE n 2 62 GLN n 2 63 LYS n 2 64 GLU n 2 65 SER n 2 66 THR n 2 67 LEU n 2 68 HIS n 2 69 LEU n 2 70 VAL n 2 71 LEU n 2 72 ARG n 2 73 LEU n 2 74 ARG n 2 75 GLY n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 188 Human ? 'JOSD2, SBBI54' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? ? ? ? ? pETHSUL-Jos2 ? ? 2 1 sample 'Biological sequence' 1 75 Human ? UBB ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP JOS2_HUMAN Q8TAC2 ? 1 ;SQAPGAQPSPPTVYHERQRLELCAVHALNNVLQQQLFSQEAADEICKRLAPDSRLNPHRSLLGTGNYDVNVIMAALQGLG LAAVWWDRRRPLSQLALPQVLGLILNLPSPVSLGLLSLPLRRRHWVALRQVDGVYYNLDSKLRAPEALGDEDGVRAFLAA ALAQGLCEVLLVVTKEVEEKGSWLRTD ; 2 2 UNP UBB_HUMAN P0CG47 ? 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6PGV A 2 ? 188 ? Q8TAC2 2 ? 188 ? 2 188 2 2 6PGV B 1 ? 75 ? P0CG47 1 ? 75 ? 1 75 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 6PGV _struct_ref_seq_dif.mon_id MSE _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q8TAC2 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'initiating methionine' _struct_ref_seq_dif.pdbx_auth_seq_num 1 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NEH non-polymer . ETHANAMINE ? 'C2 H7 N' 45.084 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6PGV _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.36 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 47.90 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method MICROBATCH _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.1 M sodium acetate pH 4.6, 0.2 M CaCl2, 22.5% (w/v) PEG 6000; microbatch under Al's Oil ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2011-03-23 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.900 1.0 2 0.9787 1.0 3 0.9792 1.0 4 0.9700 1.0 5 1.0053 1.0 6 1.0089 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSLS BEAMLINE X6A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list '0.900, 0.9787, 0.9792, 0.9700, 1.0053, 1.0089' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline X6A _diffrn_source.pdbx_synchrotron_site NSLS # _reflns.B_iso_Wilson_estimate 50.4 _reflns.entry_id 6PGV _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.3 _reflns.d_resolution_low 20 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 12866 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.3 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 77.0 _reflns.pdbx_Rmerge_I_obs 0.058 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 81.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.058 _reflns.pdbx_Rpim_I_all 0.007 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1.00 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.30 _reflns_shell.d_res_low 2.38 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1237 _reflns_shell.percent_possible_all 97.4 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.99 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 46.2 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 1.00 _reflns_shell.pdbx_Rpim_I_all 0.145 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.949 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6PGV _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.300 _refine.ls_d_res_low 19.815 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 23492 _refine.ls_number_reflns_R_free 1134 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.41 _refine.ls_percent_reflns_R_free 4.83 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.2240 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2010 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.58 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 23.90 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.29 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.300 _refine_hist.d_res_low 19.815 _refine_hist.number_atoms_solvent 24 _refine_hist.number_atoms_total 1825 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 1801 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.002 ? 1832 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.498 ? 2478 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 10.455 ? 1119 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.040 ? 287 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.003 ? 319 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.3001 2.4047 . . 146 2771 98.00 . . . 0.3616 . 0.2729 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.4047 2.5312 . . 150 2803 100.00 . . . 0.2798 . 0.2478 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.5312 2.6894 . . 141 2875 100.00 . . . 0.2377 . 0.2259 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.6894 2.8965 . . 122 2838 100.00 . . . 0.2839 . 0.2382 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.8965 3.1869 . . 158 2826 100.00 . . . 0.2218 . 0.2297 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.1869 3.6456 . . 154 2764 100.00 . . . 0.2361 . 0.2089 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.6456 4.5836 . . 144 2610 99.00 . . . 0.1776 . 0.1677 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.5836 19.8158 . . 119 2871 100.00 . . . 0.2212 . 0.1777 . . . . . . . . . . # _struct.entry_id 6PGV _struct.title 'Human Josephin-2 in complex with ubiquitin' _struct.pdbx_descriptor 'Josephin-2 (E.C.3.4.19.12), Polyubiquitin-B' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6PGV _struct_keywords.text 'deubiquitinating enzyme, Josephin, ubiquitin, HYDROLASE' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LEU A 23 ? GLN A 34 ? LEU A 23 GLN A 34 1 ? 12 HELX_P HELX_P2 AA2 SER A 39 ? LEU A 50 ? SER A 39 LEU A 50 1 ? 12 HELX_P HELX_P3 AA3 ASP A 69 ? GLY A 79 ? ASP A 69 GLY A 79 1 ? 11 HELX_P HELX_P4 AA4 PRO A 92 ? LEU A 96 ? PRO A 92 LEU A 96 5 ? 5 HELX_P HELX_P5 AA5 ALA A 97 ? VAL A 101 ? ALA A 97 VAL A 101 5 ? 5 HELX_P HELX_P6 AA6 ASP A 151 ? GLY A 166 ? ASP A 151 GLY A 166 1 ? 16 HELX_P HELX_P7 AA7 LYS A 176 ? GLY A 182 ? LYS A 176 GLY A 182 1 ? 7 HELX_P HELX_P8 AA8 THR B 22 ? GLY B 35 ? THR B 22 GLY B 35 1 ? 14 HELX_P HELX_P9 AA9 PRO B 37 ? ASP B 39 ? PRO B 37 ASP B 39 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale none ? A CYS 24 SG ? ? ? 1_555 C NEH . CB ? ? A CYS 24 B NEH 101 1_555 ? ? ? ? ? ? ? 1.834 ? covale2 covale both ? A ILE 73 C ? ? ? 1_555 A MSE 74 N ? ? A ILE 73 A MSE 74 1_555 ? ? ? ? ? ? ? 1.327 ? covale3 covale both ? A MSE 74 C ? ? ? 1_555 A ALA 75 N ? ? A MSE 74 A ALA 75 1_555 ? ? ? ? ? ? ? 1.335 ? covale4 covale one ? B GLY 75 C ? ? ? 1_555 C NEH . N ? ? B GLY 75 B NEH 101 1_555 ? ? ? ? ? ? ? 1.331 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 6 ? AA2 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU A 82 ? TRP A 86 ? LEU A 82 TRP A 86 AA1 2 GLU A 169 ? THR A 175 ? GLU A 169 THR A 175 AA1 3 GLY A 103 ? PRO A 109 ? GLY A 103 PRO A 109 AA1 4 ARG A 124 ? VAL A 132 ? ARG A 124 VAL A 132 AA1 5 VAL A 135 ? ASN A 138 ? VAL A 135 ASN A 138 AA1 6 GLU A 147 ? GLY A 150 ? GLU A 147 GLY A 150 AA2 1 THR B 12 ? GLU B 16 ? THR B 12 GLU B 16 AA2 2 GLN B 2 ? THR B 7 ? GLN B 2 THR B 7 AA2 3 THR B 66 ? LEU B 71 ? THR B 66 LEU B 71 AA2 4 GLN B 41 ? PHE B 45 ? GLN B 41 PHE B 45 AA2 5 LYS B 48 ? GLN B 49 ? LYS B 48 GLN B 49 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 85 ? N VAL A 85 O LEU A 172 ? O LEU A 172 AA1 2 3 O VAL A 173 ? O VAL A 173 N GLY A 103 ? N GLY A 103 AA1 3 4 N LEU A 106 ? N LEU A 106 O VAL A 127 ? O VAL A 127 AA1 4 5 N VAL A 132 ? N VAL A 132 O VAL A 135 ? O VAL A 135 AA1 5 6 N TYR A 136 ? N TYR A 136 O LEU A 149 ? O LEU A 149 AA2 1 2 O ILE B 13 ? O ILE B 13 N VAL B 5 ? N VAL B 5 AA2 2 3 N PHE B 4 ? N PHE B 4 O LEU B 67 ? O LEU B 67 AA2 3 4 O HIS B 68 ? O HIS B 68 N ILE B 44 ? N ILE B 44 AA2 4 5 N PHE B 45 ? N PHE B 45 O LYS B 48 ? O LYS B 48 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id B _struct_site.pdbx_auth_comp_id NEH _struct_site.pdbx_auth_seq_id 101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'binding site for residue NEH B 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 24 ? CYS A 24 . ? 1_555 ? 2 AC1 4 ASN A 67 ? ASN A 67 . ? 1_555 ? 3 AC1 4 ARG A 124 ? ARG A 124 . ? 1_555 ? 4 AC1 4 GLY B 75 ? GLY B 75 . ? 1_555 ? # _atom_sites.entry_id 6PGV _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.009792 _atom_sites.fract_transf_matrix[1][2] 0.005654 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011307 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010846 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 ? ? ? A . n A 1 2 SER 2 2 ? ? ? A . n A 1 3 GLN 3 3 ? ? ? A . n A 1 4 ALA 4 4 ? ? ? A . n A 1 5 PRO 5 5 ? ? ? A . n A 1 6 GLY 6 6 ? ? ? A . n A 1 7 ALA 7 7 ? ? ? A . n A 1 8 GLN 8 8 ? ? ? A . n A 1 9 PRO 9 9 ? ? ? A . n A 1 10 SER 10 10 ? ? ? A . n A 1 11 PRO 11 11 ? ? ? A . n A 1 12 PRO 12 12 12 PRO PRO A . n A 1 13 THR 13 13 13 THR THR A . n A 1 14 VAL 14 14 14 VAL VAL A . n A 1 15 TYR 15 15 15 TYR TYR A . n A 1 16 HIS 16 16 16 HIS HIS A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 ARG 18 18 18 ARG ARG A . n A 1 19 GLN 19 19 19 GLN GLN A . n A 1 20 ARG 20 20 20 ARG ARG A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 CYS 24 24 24 CYS CYS A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 HIS 27 27 27 HIS HIS A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 ASN 30 30 30 ASN ASN A . n A 1 31 ASN 31 31 31 ASN ASN A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 GLN 34 34 34 GLN GLN A . n A 1 35 GLN 35 35 35 GLN GLN A . n A 1 36 GLN 36 36 36 GLN GLN A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 PHE 38 38 38 PHE PHE A . n A 1 39 SER 39 39 39 SER SER A . n A 1 40 GLN 40 40 40 GLN GLN A . n A 1 41 GLU 41 41 41 GLU GLU A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 ASP 44 44 44 ASP ASP A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 ILE 46 46 46 ILE ILE A . n A 1 47 CYS 47 47 47 CYS CYS A . n A 1 48 LYS 48 48 48 LYS LYS A . n A 1 49 ARG 49 49 49 ARG ARG A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 PRO 52 52 ? ? ? A . n A 1 53 ASP 53 53 ? ? ? A . n A 1 54 SER 54 54 ? ? ? A . n A 1 55 ARG 55 55 ? ? ? A . n A 1 56 LEU 56 56 ? ? ? A . n A 1 57 ASN 57 57 ? ? ? A . n A 1 58 PRO 58 58 ? ? ? A . n A 1 59 HIS 59 59 ? ? ? A . n A 1 60 ARG 60 60 ? ? ? A . n A 1 61 SER 61 61 ? ? ? A . n A 1 62 LEU 62 62 ? ? ? A . n A 1 63 LEU 63 63 ? ? ? A . n A 1 64 GLY 64 64 ? ? ? A . n A 1 65 THR 65 65 65 THR THR A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 ASN 67 67 67 ASN ASN A . n A 1 68 TYR 68 68 68 TYR TYR A . n A 1 69 ASP 69 69 69 ASP ASP A . n A 1 70 VAL 70 70 70 VAL VAL A . n A 1 71 ASN 71 71 71 ASN ASN A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 ILE 73 73 73 ILE ILE A . n A 1 74 MSE 74 74 74 MSE MSE A . n A 1 75 ALA 75 75 75 ALA ALA A . n A 1 76 ALA 76 76 76 ALA ALA A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 GLN 78 78 78 GLN GLN A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 LEU 80 80 80 LEU LEU A . n A 1 81 GLY 81 81 81 GLY GLY A . n A 1 82 LEU 82 82 82 LEU LEU A . n A 1 83 ALA 83 83 83 ALA ALA A . n A 1 84 ALA 84 84 84 ALA ALA A . n A 1 85 VAL 85 85 85 VAL VAL A . n A 1 86 TRP 86 86 86 TRP TRP A . n A 1 87 TRP 87 87 87 TRP TRP A . n A 1 88 ASP 88 88 88 ASP ASP A . n A 1 89 ARG 89 89 89 ARG ARG A . n A 1 90 ARG 90 90 90 ARG ARG A . n A 1 91 ARG 91 91 91 ARG ARG A . n A 1 92 PRO 92 92 92 PRO PRO A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 SER 94 94 94 SER SER A . n A 1 95 GLN 95 95 95 GLN GLN A . n A 1 96 LEU 96 96 96 LEU LEU A . n A 1 97 ALA 97 97 97 ALA ALA A . n A 1 98 LEU 98 98 98 LEU LEU A . n A 1 99 PRO 99 99 99 PRO PRO A . n A 1 100 GLN 100 100 100 GLN GLN A . n A 1 101 VAL 101 101 101 VAL VAL A . n A 1 102 LEU 102 102 102 LEU LEU A . n A 1 103 GLY 103 103 103 GLY GLY A . n A 1 104 LEU 104 104 104 LEU LEU A . n A 1 105 ILE 105 105 105 ILE ILE A . n A 1 106 LEU 106 106 106 LEU LEU A . n A 1 107 ASN 107 107 107 ASN ASN A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 PRO 109 109 109 PRO PRO A . n A 1 110 SER 110 110 110 SER SER A . n A 1 111 PRO 111 111 111 PRO PRO A . n A 1 112 VAL 112 112 ? ? ? A . n A 1 113 SER 113 113 ? ? ? A . n A 1 114 LEU 114 114 ? ? ? A . n A 1 115 GLY 115 115 ? ? ? A . n A 1 116 LEU 116 116 ? ? ? A . n A 1 117 LEU 117 117 ? ? ? A . n A 1 118 SER 118 118 ? ? ? A . n A 1 119 LEU 119 119 ? ? ? A . n A 1 120 PRO 120 120 ? ? ? A . n A 1 121 LEU 121 121 ? ? ? A . n A 1 122 ARG 122 122 122 ARG ARG A . n A 1 123 ARG 123 123 123 ARG ARG A . n A 1 124 ARG 124 124 124 ARG ARG A . n A 1 125 HIS 125 125 125 HIS HIS A . n A 1 126 TRP 126 126 126 TRP TRP A . n A 1 127 VAL 127 127 127 VAL VAL A . n A 1 128 ALA 128 128 128 ALA ALA A . n A 1 129 LEU 129 129 129 LEU LEU A . n A 1 130 ARG 130 130 130 ARG ARG A . n A 1 131 GLN 131 131 131 GLN GLN A . n A 1 132 VAL 132 132 132 VAL VAL A . n A 1 133 ASP 133 133 133 ASP ASP A . n A 1 134 GLY 134 134 134 GLY GLY A . n A 1 135 VAL 135 135 135 VAL VAL A . n A 1 136 TYR 136 136 136 TYR TYR A . n A 1 137 TYR 137 137 137 TYR TYR A . n A 1 138 ASN 138 138 138 ASN ASN A . n A 1 139 LEU 139 139 139 LEU LEU A . n A 1 140 ASP 140 140 140 ASP ASP A . n A 1 141 SER 141 141 141 SER SER A . n A 1 142 LYS 142 142 142 LYS LYS A . n A 1 143 LEU 143 143 143 LEU LEU A . n A 1 144 ARG 144 144 144 ARG ARG A . n A 1 145 ALA 145 145 145 ALA ALA A . n A 1 146 PRO 146 146 146 PRO PRO A . n A 1 147 GLU 147 147 147 GLU GLU A . n A 1 148 ALA 148 148 148 ALA ALA A . n A 1 149 LEU 149 149 149 LEU LEU A . n A 1 150 GLY 150 150 150 GLY GLY A . n A 1 151 ASP 151 151 151 ASP ASP A . n A 1 152 GLU 152 152 152 GLU GLU A . n A 1 153 ASP 153 153 153 ASP ASP A . n A 1 154 GLY 154 154 154 GLY GLY A . n A 1 155 VAL 155 155 155 VAL VAL A . n A 1 156 ARG 156 156 156 ARG ARG A . n A 1 157 ALA 157 157 157 ALA ALA A . n A 1 158 PHE 158 158 158 PHE PHE A . n A 1 159 LEU 159 159 159 LEU LEU A . n A 1 160 ALA 160 160 160 ALA ALA A . n A 1 161 ALA 161 161 161 ALA ALA A . n A 1 162 ALA 162 162 162 ALA ALA A . n A 1 163 LEU 163 163 163 LEU LEU A . n A 1 164 ALA 164 164 164 ALA ALA A . n A 1 165 GLN 165 165 165 GLN GLN A . n A 1 166 GLY 166 166 166 GLY GLY A . n A 1 167 LEU 167 167 167 LEU LEU A . n A 1 168 CYS 168 168 168 CYS CYS A . n A 1 169 GLU 169 169 169 GLU GLU A . n A 1 170 VAL 170 170 170 VAL VAL A . n A 1 171 LEU 171 171 171 LEU LEU A . n A 1 172 LEU 172 172 172 LEU LEU A . n A 1 173 VAL 173 173 173 VAL VAL A . n A 1 174 VAL 174 174 174 VAL VAL A . n A 1 175 THR 175 175 175 THR THR A . n A 1 176 LYS 176 176 176 LYS LYS A . n A 1 177 GLU 177 177 177 GLU GLU A . n A 1 178 VAL 178 178 178 VAL VAL A . n A 1 179 GLU 179 179 179 GLU GLU A . n A 1 180 GLU 180 180 180 GLU GLU A . n A 1 181 LYS 181 181 181 LYS LYS A . n A 1 182 GLY 182 182 182 GLY GLY A . n A 1 183 SER 183 183 183 SER SER A . n A 1 184 TRP 184 184 184 TRP TRP A . n A 1 185 LEU 185 185 185 LEU LEU A . n A 1 186 ARG 186 186 186 ARG ARG A . n A 1 187 THR 187 187 ? ? ? A . n A 1 188 ASP 188 188 ? ? ? A . n B 2 1 MET 1 1 1 MET MET B . n B 2 2 GLN 2 2 2 GLN GLN B . n B 2 3 ILE 3 3 3 ILE ILE B . n B 2 4 PHE 4 4 4 PHE PHE B . n B 2 5 VAL 5 5 5 VAL VAL B . n B 2 6 LYS 6 6 6 LYS LYS B . n B 2 7 THR 7 7 7 THR THR B . n B 2 8 LEU 8 8 8 LEU LEU B . n B 2 9 THR 9 9 9 THR THR B . n B 2 10 GLY 10 10 10 GLY GLY B . n B 2 11 LYS 11 11 11 LYS LYS B . n B 2 12 THR 12 12 12 THR THR B . n B 2 13 ILE 13 13 13 ILE ILE B . n B 2 14 THR 14 14 14 THR THR B . n B 2 15 LEU 15 15 15 LEU LEU B . n B 2 16 GLU 16 16 16 GLU GLU B . n B 2 17 VAL 17 17 17 VAL VAL B . n B 2 18 GLU 18 18 18 GLU GLU B . n B 2 19 PRO 19 19 19 PRO PRO B . n B 2 20 SER 20 20 20 SER SER B . n B 2 21 ASP 21 21 21 ASP ASP B . n B 2 22 THR 22 22 22 THR THR B . n B 2 23 ILE 23 23 23 ILE ILE B . n B 2 24 GLU 24 24 24 GLU GLU B . n B 2 25 ASN 25 25 25 ASN ASN B . n B 2 26 VAL 26 26 26 VAL VAL B . n B 2 27 LYS 27 27 27 LYS LYS B . n B 2 28 ALA 28 28 28 ALA ALA B . n B 2 29 LYS 29 29 29 LYS LYS B . n B 2 30 ILE 30 30 30 ILE ILE B . n B 2 31 GLN 31 31 31 GLN GLN B . n B 2 32 ASP 32 32 32 ASP ASP B . n B 2 33 LYS 33 33 33 LYS LYS B . n B 2 34 GLU 34 34 34 GLU GLU B . n B 2 35 GLY 35 35 35 GLY GLY B . n B 2 36 ILE 36 36 36 ILE ILE B . n B 2 37 PRO 37 37 37 PRO PRO B . n B 2 38 PRO 38 38 38 PRO PRO B . n B 2 39 ASP 39 39 39 ASP ASP B . n B 2 40 GLN 40 40 40 GLN GLN B . n B 2 41 GLN 41 41 41 GLN GLN B . n B 2 42 ARG 42 42 42 ARG ARG B . n B 2 43 LEU 43 43 43 LEU LEU B . n B 2 44 ILE 44 44 44 ILE ILE B . n B 2 45 PHE 45 45 45 PHE PHE B . n B 2 46 ALA 46 46 46 ALA ALA B . n B 2 47 GLY 47 47 47 GLY GLY B . n B 2 48 LYS 48 48 48 LYS LYS B . n B 2 49 GLN 49 49 49 GLN GLN B . n B 2 50 LEU 50 50 50 LEU LEU B . n B 2 51 GLU 51 51 51 GLU GLU B . n B 2 52 ASP 52 52 52 ASP ASP B . n B 2 53 GLY 53 53 53 GLY GLY B . n B 2 54 ARG 54 54 54 ARG ARG B . n B 2 55 THR 55 55 55 THR THR B . n B 2 56 LEU 56 56 56 LEU LEU B . n B 2 57 SER 57 57 57 SER SER B . n B 2 58 ASP 58 58 58 ASP ASP B . n B 2 59 TYR 59 59 59 TYR TYR B . n B 2 60 ASN 60 60 60 ASN ASN B . n B 2 61 ILE 61 61 61 ILE ILE B . n B 2 62 GLN 62 62 62 GLN GLN B . n B 2 63 LYS 63 63 63 LYS LYS B . n B 2 64 GLU 64 64 64 GLU GLU B . n B 2 65 SER 65 65 65 SER SER B . n B 2 66 THR 66 66 66 THR THR B . n B 2 67 LEU 67 67 67 LEU LEU B . n B 2 68 HIS 68 68 68 HIS HIS B . n B 2 69 LEU 69 69 69 LEU LEU B . n B 2 70 VAL 70 70 70 VAL VAL B . n B 2 71 LEU 71 71 71 LEU LEU B . n B 2 72 ARG 72 72 72 ARG ARG B . n B 2 73 LEU 73 73 73 LEU LEU B . n B 2 74 ARG 74 74 74 ARG ARG B . n B 2 75 GLY 75 75 75 GLY GLY B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NEH 1 101 76 NEH NEH B . D 4 HOH 1 201 6 HOH HOH A . D 4 HOH 2 202 14 HOH HOH A . D 4 HOH 3 203 12 HOH HOH A . D 4 HOH 4 204 1 HOH HOH A . D 4 HOH 5 205 18 HOH HOH A . D 4 HOH 6 206 4 HOH HOH A . D 4 HOH 7 207 13 HOH HOH A . D 4 HOH 8 208 20 HOH HOH A . D 4 HOH 9 209 11 HOH HOH A . D 4 HOH 10 210 24 HOH HOH A . D 4 HOH 11 211 3 HOH HOH A . D 4 HOH 12 212 21 HOH HOH A . D 4 HOH 13 213 9 HOH HOH A . D 4 HOH 14 214 7 HOH HOH A . D 4 HOH 15 215 19 HOH HOH A . D 4 HOH 16 216 23 HOH HOH A . D 4 HOH 17 217 22 HOH HOH A . D 4 HOH 18 218 16 HOH HOH A . E 4 HOH 1 201 5 HOH HOH B . E 4 HOH 2 202 10 HOH HOH B . E 4 HOH 3 203 15 HOH HOH B . E 4 HOH 4 204 8 HOH HOH B . E 4 HOH 5 205 17 HOH HOH B . E 4 HOH 6 206 2 HOH HOH B . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id MSE _pdbx_struct_mod_residue.label_seq_id 74 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id MSE _pdbx_struct_mod_residue.auth_seq_id 74 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1940 ? 1 MORE -8 ? 1 'SSA (A^2)' 12230 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-10-23 2 'Structure model' 1 1 2019-12-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Author supporting evidence' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category pdbx_audit_support # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 2 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_pdbx_audit_support.funding_organization' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -20.1703 41.3088 -8.4444 0.7928 0.6552 0.4825 -0.0233 -0.0442 0.0443 -1.8481 -2.4837 6.6914 1.3053 -5.1400 -2.7867 -0.0288 0.0022 -0.1977 0.5684 0.1666 0.0594 -0.2287 -1.2391 -0.5319 'X-RAY DIFFRACTION' 2 ? refined -11.8863 47.8644 -3.0673 1.3594 0.4908 -0.0292 -0.1591 0.1043 0.1621 7.8562 3.2750 8.7630 -5.0991 4.4748 -3.4707 -1.3676 -0.0188 -0.3372 0.0235 2.9160 -1.6713 -1.1443 -1.7568 1.7852 'X-RAY DIFFRACTION' 3 ? refined -11.8537 31.3146 6.2334 0.3361 0.4161 0.4338 0.0498 0.1205 0.0485 5.4631 3.0847 6.0117 -1.0453 1.1468 1.3187 -0.2156 0.0006 0.1770 0.0581 -0.6210 0.0257 -0.2766 0.4198 0.8075 'X-RAY DIFFRACTION' 4 ? refined -18.9887 24.4728 -1.0239 0.6362 0.3815 0.8361 0.0161 0.0926 -0.1253 5.8231 4.5592 7.2486 0.3875 2.2506 1.0934 -0.1501 -0.1056 0.1516 0.6132 -1.5855 0.2435 -0.2813 1.1302 -0.0898 'X-RAY DIFFRACTION' 5 ? refined -12.5252 31.0830 13.7218 0.3330 0.5843 0.4846 0.0719 0.0078 0.1439 6.5302 5.2520 3.4122 -0.9088 1.5857 -1.0633 -0.1060 0.1866 0.0729 -1.0295 -0.3063 -0.6854 0.4331 -0.0563 0.2264 'X-RAY DIFFRACTION' 6 ? refined 5.2943 38.5287 9.3698 0.4267 0.9696 0.5285 0.1138 0.0146 0.2399 6.3896 8.1010 3.9798 1.5288 2.8438 -1.8952 -0.2444 -0.8367 0.5034 0.4116 0.3383 -0.6238 0.3860 0.0181 1.5920 'X-RAY DIFFRACTION' 7 ? refined 8.4635 42.1801 5.4904 0.5945 1.5321 0.7857 -0.0177 -0.0424 0.3703 2.0283 1.8227 2.5927 1.3058 0.9506 -2.9479 -0.8158 -0.8253 0.1622 2.0007 1.1570 -0.9530 0.1950 -0.2510 1.9965 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 13 A 45 '( CHAIN A AND RESID 13:45 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 46 A 68 '( CHAIN A AND RESID 46:68 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 69 A 111 '( CHAIN A AND RESID 69:111 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 122 A 167 '( CHAIN A AND RESID 122:167 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 168 A 186 '( CHAIN A AND RESID 168:186 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 6 6 B 1 B 49 '( CHAIN B AND RESID 1:49 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 7 7 B 50 B 75 '( CHAIN B AND ( RESID 50:75 OR RESID 101:101 ) )' ? ? ? ? ? 'X-RAY DIFFRACTION' 8 7 B 101 B 101 '( CHAIN B AND ( RESID 50:75 OR RESID 101:101 ) )' ? ? ? ? ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.14_3260: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? 'Jan 26, 2018' 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? 'Jan 26, 2018' 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.14_3260)' 4 # _pdbx_entry_details.entry_id 6PGV _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 35 ? ? -170.14 141.80 2 1 ASN A 67 ? ? -115.88 70.22 3 1 LEU A 139 ? ? -96.67 31.74 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 1 ? A MSE 1 2 1 Y 1 A SER 2 ? A SER 2 3 1 Y 1 A GLN 3 ? A GLN 3 4 1 Y 1 A ALA 4 ? A ALA 4 5 1 Y 1 A PRO 5 ? A PRO 5 6 1 Y 1 A GLY 6 ? A GLY 6 7 1 Y 1 A ALA 7 ? A ALA 7 8 1 Y 1 A GLN 8 ? A GLN 8 9 1 Y 1 A PRO 9 ? A PRO 9 10 1 Y 1 A SER 10 ? A SER 10 11 1 Y 1 A PRO 11 ? A PRO 11 12 1 Y 1 A PRO 52 ? A PRO 52 13 1 Y 1 A ASP 53 ? A ASP 53 14 1 Y 1 A SER 54 ? A SER 54 15 1 Y 1 A ARG 55 ? A ARG 55 16 1 Y 1 A LEU 56 ? A LEU 56 17 1 Y 1 A ASN 57 ? A ASN 57 18 1 Y 1 A PRO 58 ? A PRO 58 19 1 Y 1 A HIS 59 ? A HIS 59 20 1 Y 1 A ARG 60 ? A ARG 60 21 1 Y 1 A SER 61 ? A SER 61 22 1 Y 1 A LEU 62 ? A LEU 62 23 1 Y 1 A LEU 63 ? A LEU 63 24 1 Y 1 A GLY 64 ? A GLY 64 25 1 Y 1 A VAL 112 ? A VAL 112 26 1 Y 1 A SER 113 ? A SER 113 27 1 Y 1 A LEU 114 ? A LEU 114 28 1 Y 1 A GLY 115 ? A GLY 115 29 1 Y 1 A LEU 116 ? A LEU 116 30 1 Y 1 A LEU 117 ? A LEU 117 31 1 Y 1 A SER 118 ? A SER 118 32 1 Y 1 A LEU 119 ? A LEU 119 33 1 Y 1 A PRO 120 ? A PRO 120 34 1 Y 1 A LEU 121 ? A LEU 121 35 1 Y 1 A THR 187 ? A THR 187 36 1 Y 1 A ASP 188 ? A ASP 188 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number R01NS065140 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 ETHANAMINE NEH 4 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details 'No evidence for higher-order complex formation from gel filtration' #