HEADER TRANSFERASE 25-JUN-19 6PH2 TITLE COMPLETE LOV DOMAIN FROM THE LOV-HK SENSORY PROTEIN FROM BRUCELLA TITLE 2 ABORTUS (MUTANT C69S, CONSTRUCT 15-155) COMPND MOL_ID: 1; COMPND 2 MOLECULE: BLUE-LIGHT-ACTIVATED HISTIDINE KINASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: BM-LOV-HISTIDINE KINASE,BM-LOV-HK; COMPND 5 EC: 2.7.13.3; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRUCELLA MELITENSIS BIOTYPE 1 (STRAIN 16M / SOURCE 3 ATCC 23456 / NCTC 10094); SOURCE 4 ORGANISM_TAXID: 224914; SOURCE 5 STRAIN: 16M / ATCC 23456 / NCTC 10094; SOURCE 6 GENE: BMEII0679; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET-24A KEYWDS PAS SUPERFAMILY, BLUE-LIGHT PHOTORECEPTOR, FMN BINDING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.RINALDI,L.H.OTERO,I.FERNANDEZ,F.A.GOLDBAUM,H.SHIN,X.YANG,S.KLINKE REVDAT 3 11-OCT-23 6PH2 1 REMARK REVDAT 2 14-JUL-21 6PH2 1 JRNL REVDAT 1 30-DEC-20 6PH2 0 JRNL AUTH J.RINALDI,I.FERNANDEZ,H.SHIN,G.SYCZ,S.GUNAWARDANA, JRNL AUTH 2 I.KUMARAPPERUMA,J.M.PAZ,L.H.OTERO,M.L.CERUTTI,A.ZORREGUIETA, JRNL AUTH 3 Z.REN,S.KLINKE,X.YANG,F.A.GOLDBAUM JRNL TITL DIMER ASYMMETRY AND LIGHT ACTIVATION MECHANISM IN BRUCELLA JRNL TITL 2 BLUE-LIGHT SENSOR HISTIDINE KINASE. JRNL REF MBIO V. 12 2021 JRNL REFN ESSN 2150-7511 JRNL PMID 33879593 JRNL DOI 10.1128/MBIO.00264-21 REMARK 2 REMARK 2 RESOLUTION. 2.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0222 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.34 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 27840 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1466 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.34 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.40 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1889 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.4120 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.3980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3900 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 124 REMARK 3 SOLVENT ATOMS : 72 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.96000 REMARK 3 B22 (A**2) : -0.28000 REMARK 3 B33 (A**2) : -2.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.325 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.239 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.214 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.903 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4132 ; 0.009 ; 0.015 REMARK 3 BOND LENGTHS OTHERS (A): 3647 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5639 ; 1.274 ; 1.759 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8549 ; 0.437 ; 1.715 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 492 ; 6.897 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;25.804 ;19.398 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 567 ;17.987 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;13.364 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 544 ; 0.059 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4980 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 740 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1980 ; 3.090 ; 3.895 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1981 ; 3.089 ; 3.898 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2468 ; 4.987 ; 5.820 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2469 ; 4.986 ; 5.823 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2152 ; 3.928 ; 4.302 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2149 ; 3.930 ; 4.303 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3172 ; 6.296 ; 6.235 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4172 ; 8.481 ;45.904 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4171 ; 8.482 ;45.902 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 19 140 B 19 140 3752 0.08 0.05 REMARK 3 2 A 19 140 C 19 140 3749 0.07 0.05 REMARK 3 3 A 18 140 D 18 140 3795 0.06 0.05 REMARK 3 4 B 19 140 C 19 140 3773 0.08 0.05 REMARK 3 5 B 19 140 D 19 140 3775 0.07 0.05 REMARK 3 6 C 19 140 D 19 140 3730 0.07 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6PH2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1000242501. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : CHANNEL CUT CRYOGENICALLY COOLED REMARK 200 CRYSTAL REMARK 200 OPTICS : KIRKPATRICK-BAEZ PAIR OF BIMORPH REMARK 200 MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29308 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.340 REMARK 200 RESOLUTION RANGE LOW (A) : 48.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.34 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3T50 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% (W/V) PEG 3350 + 0.1 M SODIUM REMARK 280 CITRATE, PH 5.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.13500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.79500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.93000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.79500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.13500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.93000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 14 REMARK 465 ALA A 15 REMARK 465 LEU A 16 REMARK 465 LEU A 142 REMARK 465 VAL A 143 REMARK 465 GLU A 144 REMARK 465 LEU A 145 REMARK 465 GLU A 146 REMARK 465 LYS A 147 REMARK 465 GLU A 148 REMARK 465 ARG A 149 REMARK 465 LYS A 150 REMARK 465 THR A 151 REMARK 465 LEU A 152 REMARK 465 SER A 153 REMARK 465 ILE A 154 REMARK 465 GLU A 155 REMARK 465 HIS A 156 REMARK 465 HIS A 157 REMARK 465 HIS A 158 REMARK 465 HIS A 159 REMARK 465 HIS A 160 REMARK 465 HIS A 161 REMARK 465 MET B 14 REMARK 465 ALA B 15 REMARK 465 LEU B 16 REMARK 465 SER B 17 REMARK 465 GLN B 18 REMARK 465 LEU B 142 REMARK 465 VAL B 143 REMARK 465 GLU B 144 REMARK 465 LEU B 145 REMARK 465 GLU B 146 REMARK 465 LYS B 147 REMARK 465 GLU B 148 REMARK 465 ARG B 149 REMARK 465 LYS B 150 REMARK 465 THR B 151 REMARK 465 LEU B 152 REMARK 465 SER B 153 REMARK 465 ILE B 154 REMARK 465 GLU B 155 REMARK 465 HIS B 156 REMARK 465 HIS B 157 REMARK 465 HIS B 158 REMARK 465 HIS B 159 REMARK 465 HIS B 160 REMARK 465 HIS B 161 REMARK 465 MET C 14 REMARK 465 ALA C 15 REMARK 465 LEU C 16 REMARK 465 SER C 17 REMARK 465 GLN C 18 REMARK 465 VAL C 143 REMARK 465 GLU C 144 REMARK 465 LEU C 145 REMARK 465 GLU C 146 REMARK 465 LYS C 147 REMARK 465 GLU C 148 REMARK 465 ARG C 149 REMARK 465 LYS C 150 REMARK 465 THR C 151 REMARK 465 LEU C 152 REMARK 465 SER C 153 REMARK 465 ILE C 154 REMARK 465 GLU C 155 REMARK 465 HIS C 156 REMARK 465 HIS C 157 REMARK 465 HIS C 158 REMARK 465 HIS C 159 REMARK 465 HIS C 160 REMARK 465 HIS C 161 REMARK 465 MET D 14 REMARK 465 ALA D 15 REMARK 465 LEU D 16 REMARK 465 SER D 17 REMARK 465 LEU D 142 REMARK 465 VAL D 143 REMARK 465 GLU D 144 REMARK 465 LEU D 145 REMARK 465 GLU D 146 REMARK 465 LYS D 147 REMARK 465 GLU D 148 REMARK 465 ARG D 149 REMARK 465 LYS D 150 REMARK 465 THR D 151 REMARK 465 LEU D 152 REMARK 465 SER D 153 REMARK 465 ILE D 154 REMARK 465 GLU D 155 REMARK 465 HIS D 156 REMARK 465 HIS D 157 REMARK 465 HIS D 158 REMARK 465 HIS D 159 REMARK 465 HIS D 160 REMARK 465 HIS D 161 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 24 OE2 GLU B 28 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 126 -52.60 -123.10 REMARK 500 GLN B 126 -51.09 -122.90 REMARK 500 SER B 140 61.14 -68.13 REMARK 500 ASN C 120 174.91 -59.94 REMARK 500 GLN C 126 -53.17 -122.08 REMARK 500 ASN D 120 173.86 -58.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG D 67 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN C 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN D 200 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3T50 RELATED DB: PDB REMARK 900 LOV DOMAIN FROM THE LOV-HK SENSORY PROTEIN FROM BRUCELLA ABORTUS REMARK 900 (WILD-TYPE, CONSTRUCT 28-139, DARK-ADAPTED) DBREF 6PH2 A 15 155 UNP Q8YC53 LOVHK_BRUME 15 155 DBREF 6PH2 B 15 155 UNP Q8YC53 LOVHK_BRUME 15 155 DBREF 6PH2 C 15 155 UNP Q8YC53 LOVHK_BRUME 15 155 DBREF 6PH2 D 15 155 UNP Q8YC53 LOVHK_BRUME 15 155 SEQADV 6PH2 MET A 14 UNP Q8YC53 INITIATING METHIONINE SEQADV 6PH2 SER A 69 UNP Q8YC53 CYS 69 ENGINEERED MUTATION SEQADV 6PH2 HIS A 156 UNP Q8YC53 EXPRESSION TAG SEQADV 6PH2 HIS A 157 UNP Q8YC53 EXPRESSION TAG SEQADV 6PH2 HIS A 158 UNP Q8YC53 EXPRESSION TAG SEQADV 6PH2 HIS A 159 UNP Q8YC53 EXPRESSION TAG SEQADV 6PH2 HIS A 160 UNP Q8YC53 EXPRESSION TAG SEQADV 6PH2 HIS A 161 UNP Q8YC53 EXPRESSION TAG SEQADV 6PH2 MET B 14 UNP Q8YC53 INITIATING METHIONINE SEQADV 6PH2 SER B 69 UNP Q8YC53 CYS 69 ENGINEERED MUTATION SEQADV 6PH2 HIS B 156 UNP Q8YC53 EXPRESSION TAG SEQADV 6PH2 HIS B 157 UNP Q8YC53 EXPRESSION TAG SEQADV 6PH2 HIS B 158 UNP Q8YC53 EXPRESSION TAG SEQADV 6PH2 HIS B 159 UNP Q8YC53 EXPRESSION TAG SEQADV 6PH2 HIS B 160 UNP Q8YC53 EXPRESSION TAG SEQADV 6PH2 HIS B 161 UNP Q8YC53 EXPRESSION TAG SEQADV 6PH2 MET C 14 UNP Q8YC53 INITIATING METHIONINE SEQADV 6PH2 SER C 69 UNP Q8YC53 CYS 69 ENGINEERED MUTATION SEQADV 6PH2 HIS C 156 UNP Q8YC53 EXPRESSION TAG SEQADV 6PH2 HIS C 157 UNP Q8YC53 EXPRESSION TAG SEQADV 6PH2 HIS C 158 UNP Q8YC53 EXPRESSION TAG SEQADV 6PH2 HIS C 159 UNP Q8YC53 EXPRESSION TAG SEQADV 6PH2 HIS C 160 UNP Q8YC53 EXPRESSION TAG SEQADV 6PH2 HIS C 161 UNP Q8YC53 EXPRESSION TAG SEQADV 6PH2 MET D 14 UNP Q8YC53 INITIATING METHIONINE SEQADV 6PH2 SER D 69 UNP Q8YC53 CYS 69 ENGINEERED MUTATION SEQADV 6PH2 HIS D 156 UNP Q8YC53 EXPRESSION TAG SEQADV 6PH2 HIS D 157 UNP Q8YC53 EXPRESSION TAG SEQADV 6PH2 HIS D 158 UNP Q8YC53 EXPRESSION TAG SEQADV 6PH2 HIS D 159 UNP Q8YC53 EXPRESSION TAG SEQADV 6PH2 HIS D 160 UNP Q8YC53 EXPRESSION TAG SEQADV 6PH2 HIS D 161 UNP Q8YC53 EXPRESSION TAG SEQRES 1 A 148 MET ALA LEU SER GLN ALA THR ASP PRO PHE ARG ALA ALA SEQRES 2 A 148 VAL GLU PHE THR LEU MET PRO MET LEU ILE THR ASN PRO SEQRES 3 A 148 HIS LEU PRO ASP ASN PRO ILE VAL PHE ALA ASN PRO ALA SEQRES 4 A 148 PHE LEU LYS LEU THR GLY TYR GLU ALA ASP GLU VAL MET SEQRES 5 A 148 GLY ARG ASN SER ARG PHE LEU GLN GLY HIS GLY THR ASP SEQRES 6 A 148 PRO ALA HIS VAL ARG ALA ILE LYS SER ALA ILE ALA ALA SEQRES 7 A 148 GLU LYS PRO ILE ASP ILE ASP ILE ILE ASN TYR LYS LYS SEQRES 8 A 148 SER GLY GLU ALA PHE TRP ASN ARG LEU HIS ILE SER PRO SEQRES 9 A 148 VAL HIS ASN ALA ASN GLY ARG LEU GLN HIS PHE VAL SER SEQRES 10 A 148 SER GLN LEU ASP VAL THR LEU GLU LEU SER ARG LEU VAL SEQRES 11 A 148 GLU LEU GLU LYS GLU ARG LYS THR LEU SER ILE GLU HIS SEQRES 12 A 148 HIS HIS HIS HIS HIS SEQRES 1 B 148 MET ALA LEU SER GLN ALA THR ASP PRO PHE ARG ALA ALA SEQRES 2 B 148 VAL GLU PHE THR LEU MET PRO MET LEU ILE THR ASN PRO SEQRES 3 B 148 HIS LEU PRO ASP ASN PRO ILE VAL PHE ALA ASN PRO ALA SEQRES 4 B 148 PHE LEU LYS LEU THR GLY TYR GLU ALA ASP GLU VAL MET SEQRES 5 B 148 GLY ARG ASN SER ARG PHE LEU GLN GLY HIS GLY THR ASP SEQRES 6 B 148 PRO ALA HIS VAL ARG ALA ILE LYS SER ALA ILE ALA ALA SEQRES 7 B 148 GLU LYS PRO ILE ASP ILE ASP ILE ILE ASN TYR LYS LYS SEQRES 8 B 148 SER GLY GLU ALA PHE TRP ASN ARG LEU HIS ILE SER PRO SEQRES 9 B 148 VAL HIS ASN ALA ASN GLY ARG LEU GLN HIS PHE VAL SER SEQRES 10 B 148 SER GLN LEU ASP VAL THR LEU GLU LEU SER ARG LEU VAL SEQRES 11 B 148 GLU LEU GLU LYS GLU ARG LYS THR LEU SER ILE GLU HIS SEQRES 12 B 148 HIS HIS HIS HIS HIS SEQRES 1 C 148 MET ALA LEU SER GLN ALA THR ASP PRO PHE ARG ALA ALA SEQRES 2 C 148 VAL GLU PHE THR LEU MET PRO MET LEU ILE THR ASN PRO SEQRES 3 C 148 HIS LEU PRO ASP ASN PRO ILE VAL PHE ALA ASN PRO ALA SEQRES 4 C 148 PHE LEU LYS LEU THR GLY TYR GLU ALA ASP GLU VAL MET SEQRES 5 C 148 GLY ARG ASN SER ARG PHE LEU GLN GLY HIS GLY THR ASP SEQRES 6 C 148 PRO ALA HIS VAL ARG ALA ILE LYS SER ALA ILE ALA ALA SEQRES 7 C 148 GLU LYS PRO ILE ASP ILE ASP ILE ILE ASN TYR LYS LYS SEQRES 8 C 148 SER GLY GLU ALA PHE TRP ASN ARG LEU HIS ILE SER PRO SEQRES 9 C 148 VAL HIS ASN ALA ASN GLY ARG LEU GLN HIS PHE VAL SER SEQRES 10 C 148 SER GLN LEU ASP VAL THR LEU GLU LEU SER ARG LEU VAL SEQRES 11 C 148 GLU LEU GLU LYS GLU ARG LYS THR LEU SER ILE GLU HIS SEQRES 12 C 148 HIS HIS HIS HIS HIS SEQRES 1 D 148 MET ALA LEU SER GLN ALA THR ASP PRO PHE ARG ALA ALA SEQRES 2 D 148 VAL GLU PHE THR LEU MET PRO MET LEU ILE THR ASN PRO SEQRES 3 D 148 HIS LEU PRO ASP ASN PRO ILE VAL PHE ALA ASN PRO ALA SEQRES 4 D 148 PHE LEU LYS LEU THR GLY TYR GLU ALA ASP GLU VAL MET SEQRES 5 D 148 GLY ARG ASN SER ARG PHE LEU GLN GLY HIS GLY THR ASP SEQRES 6 D 148 PRO ALA HIS VAL ARG ALA ILE LYS SER ALA ILE ALA ALA SEQRES 7 D 148 GLU LYS PRO ILE ASP ILE ASP ILE ILE ASN TYR LYS LYS SEQRES 8 D 148 SER GLY GLU ALA PHE TRP ASN ARG LEU HIS ILE SER PRO SEQRES 9 D 148 VAL HIS ASN ALA ASN GLY ARG LEU GLN HIS PHE VAL SER SEQRES 10 D 148 SER GLN LEU ASP VAL THR LEU GLU LEU SER ARG LEU VAL SEQRES 11 D 148 GLU LEU GLU LYS GLU ARG LYS THR LEU SER ILE GLU HIS SEQRES 12 D 148 HIS HIS HIS HIS HIS HET FMN A 200 31 HET FMN B 200 31 HET FMN C 200 31 HET FMN D 200 31 HETNAM FMN FLAVIN MONONUCLEOTIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 5 FMN 4(C17 H21 N4 O9 P) FORMUL 9 HOH *72(H2 O) HELIX 1 AA1 ASP A 21 THR A 30 1 10 HELIX 2 AA2 ASN A 50 GLY A 58 1 9 HELIX 3 AA3 GLU A 60 MET A 65 1 6 HELIX 4 AA4 ASN A 68 GLN A 73 5 6 HELIX 5 AA5 ASP A 78 ALA A 91 1 14 HELIX 6 AA6 VAL A 135 SER A 140 1 6 HELIX 7 AA7 ASP B 21 THR B 30 1 10 HELIX 8 AA8 ASN B 50 GLY B 58 1 9 HELIX 9 AA9 GLU B 60 MET B 65 1 6 HELIX 10 AB1 ASN B 68 GLN B 73 5 6 HELIX 11 AB2 ASP B 78 ALA B 91 1 14 HELIX 12 AB3 VAL B 135 SER B 140 1 6 HELIX 13 AB4 ASP C 21 THR C 30 1 10 HELIX 14 AB5 ASN C 50 GLY C 58 1 9 HELIX 15 AB6 GLU C 60 MET C 65 1 6 HELIX 16 AB7 ASN C 68 GLN C 73 5 6 HELIX 17 AB8 ASP C 78 ALA C 91 1 14 HELIX 18 AB9 VAL C 135 ARG C 141 1 7 HELIX 19 AC1 ASP D 21 THR D 30 1 10 HELIX 20 AC2 ASN D 50 GLY D 58 1 9 HELIX 21 AC3 GLU D 60 MET D 65 1 6 HELIX 22 AC4 ASN D 68 GLN D 73 5 6 HELIX 23 AC5 ASP D 78 ALA D 91 1 14 HELIX 24 AC6 VAL D 135 SER D 140 1 6 SHEET 1 AA1 5 ILE A 46 ALA A 49 0 SHEET 2 AA1 5 MET A 34 THR A 37 -1 N ILE A 36 O VAL A 47 SHEET 3 AA1 5 LEU A 125 ASP A 134 -1 O PHE A 128 N THR A 37 SHEET 4 AA1 5 ALA A 108 HIS A 119 -1 N SER A 116 O VAL A 129 SHEET 5 AA1 5 ILE A 95 TYR A 102 -1 N ILE A 99 O ASN A 111 SHEET 1 AA2 5 ILE B 46 ALA B 49 0 SHEET 2 AA2 5 MET B 34 THR B 37 -1 N ILE B 36 O VAL B 47 SHEET 3 AA2 5 LEU B 125 ASP B 134 -1 O PHE B 128 N THR B 37 SHEET 4 AA2 5 ALA B 108 HIS B 119 -1 N SER B 116 O VAL B 129 SHEET 5 AA2 5 ILE B 95 TYR B 102 -1 N ILE B 97 O LEU B 113 SHEET 1 AA3 5 ILE C 46 ALA C 49 0 SHEET 2 AA3 5 MET C 34 THR C 37 -1 N ILE C 36 O VAL C 47 SHEET 3 AA3 5 LEU C 125 ASP C 134 -1 O PHE C 128 N THR C 37 SHEET 4 AA3 5 ALA C 108 HIS C 119 -1 N SER C 116 O VAL C 129 SHEET 5 AA3 5 ILE C 95 TYR C 102 -1 N ILE C 99 O ASN C 111 SHEET 1 AA4 5 ILE D 46 ALA D 49 0 SHEET 2 AA4 5 MET D 34 THR D 37 -1 N ILE D 36 O VAL D 47 SHEET 3 AA4 5 LEU D 125 ASP D 134 -1 O PHE D 128 N THR D 37 SHEET 4 AA4 5 ALA D 108 HIS D 119 -1 N SER D 116 O VAL D 129 SHEET 5 AA4 5 ILE D 95 TYR D 102 -1 N ILE D 97 O LEU D 113 SITE 1 AC1 16 THR A 37 ASN A 44 ASN A 68 SER A 69 SITE 2 AC1 16 ARG A 70 LEU A 72 GLN A 73 VAL A 82 SITE 3 AC1 16 ILE A 85 LYS A 86 ILE A 89 ASN A 101 SITE 4 AC1 16 ASN A 111 PHE A 128 SER A 130 GLN A 132 SITE 1 AC2 18 THR B 37 ASN B 44 ASN B 68 SER B 69 SITE 2 AC2 18 ARG B 70 LEU B 72 GLN B 73 VAL B 82 SITE 3 AC2 18 ILE B 85 LYS B 86 ILE B 89 ASN B 101 SITE 4 AC2 18 ASN B 111 LEU B 113 PHE B 128 SER B 130 SITE 5 AC2 18 GLN B 132 HOH B 309 SITE 1 AC3 18 THR C 37 ASN C 44 ASN C 68 SER C 69 SITE 2 AC3 18 ARG C 70 LEU C 72 GLN C 73 VAL C 82 SITE 3 AC3 18 ILE C 85 LYS C 86 ILE C 89 ILE C 99 SITE 4 AC3 18 ASN C 101 ASN C 111 ILE C 115 SER C 130 SITE 5 AC3 18 GLN C 132 HOH C 306 SITE 1 AC4 18 THR D 37 ASN D 44 ASN D 68 SER D 69 SITE 2 AC4 18 ARG D 70 LEU D 72 GLN D 73 VAL D 82 SITE 3 AC4 18 ILE D 85 LYS D 86 ILE D 89 ASN D 101 SITE 4 AC4 18 ASN D 111 LEU D 113 PHE D 128 SER D 130 SITE 5 AC4 18 GLN D 132 HOH D 301 CRYST1 66.270 95.860 107.590 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015090 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010432 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009295 0.00000