HEADER TRANSFERASE 25-JUN-19 6PH4 TITLE FULL LENGTH LOV-PAS-HK CONSTRUCT FROM THE LOV-HK SENSORY PROTEIN FROM TITLE 2 BRUCELLA ABORTUS (LIGHT-ADAPTED, CONSTRUCT 15-489) COMPND MOL_ID: 1; COMPND 2 MOLECULE: BLUE-LIGHT-ACTIVATED HISTIDINE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BM-LOV-HISTIDINE KINASE,BM-LOV-HK; COMPND 5 EC: 2.7.13.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRUCELLA MELITENSIS BIOTYPE 1 (STRAIN 16M / SOURCE 3 ATCC 23456 / NCTC 10094); SOURCE 4 ORGANISM_TAXID: 224914; SOURCE 5 STRAIN: 16M / ATCC 23456 / NCTC 10094; SOURCE 6 GENE: BMEII0679; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET-24A KEYWDS PAS SUPERFAMILY, BLUE-LIGHT PHOTORECEPTOR, FMN BINDING, TRANSFERASE, KEYWDS 2 HISTIDINE KINASE EXPDTA X-RAY DIFFRACTION AUTHOR J.RINALDI,L.H.OTERO,I.FERNANDEZ,F.A.GOLDBAUM,H.SHIN,X.YANG,S.KLINKE REVDAT 3 11-OCT-23 6PH4 1 REMARK REVDAT 2 14-JUL-21 6PH4 1 JRNL REVDAT 1 30-DEC-20 6PH4 0 JRNL AUTH J.RINALDI,I.FERNANDEZ,H.SHIN,G.SYCZ,S.GUNAWARDANA, JRNL AUTH 2 I.KUMARAPPERUMA,J.M.PAZ,L.H.OTERO,M.L.CERUTTI,A.ZORREGUIETA, JRNL AUTH 3 Z.REN,S.KLINKE,X.YANG,F.A.GOLDBAUM JRNL TITL DIMER ASYMMETRY AND LIGHT ACTIVATION MECHANISM IN BRUCELLA JRNL TITL 2 BLUE-LIGHT SENSOR HISTIDINE KINASE. JRNL REF MBIO V. 12 2021 JRNL REFN ESSN 2150-7511 JRNL PMID 33879593 JRNL DOI 10.1128/MBIO.00264-21 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.RINALDI,I.FERNANDEZ,L.M.POTH,W.E.SHEPARD,M.SAVKO, REMARK 1 AUTH 2 F.A.GOLDBAUM,S.KLINKE REMARK 1 TITL CRYSTALLIZATION AND INITIAL X-RAY DIFFRACTION ANALYSIS OF REMARK 1 TITL 2 THE MULTI-DOMAIN BRUCELLA BLUE LIGHT-ACTIVATED HISTIDINE REMARK 1 TITL 3 KINASE LOV-HK IN ITS ILLUMINATED STATE REMARK 1 REF BIOCHEM BIOPHYS REP V. 16 39 2018 REMARK 1 REFN ESSN 2405-5808 REMARK 1 DOI 10.1016/J.BBREP.2018.09.005 REMARK 2 REMARK 2 RESOLUTION. 3.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.470 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 26791 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.258 REMARK 3 R VALUE (WORKING SET) : 0.255 REMARK 3 FREE R VALUE : 0.318 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2541 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 62.5314 - 8.5107 1.00 2651 148 0.1856 0.2767 REMARK 3 2 8.5107 - 6.7578 1.00 2647 150 0.2309 0.2718 REMARK 3 3 6.7578 - 5.9043 1.00 2652 137 0.2715 0.3045 REMARK 3 4 5.9043 - 5.3648 1.00 2674 152 0.2781 0.3581 REMARK 3 5 5.3648 - 4.9804 1.00 2664 128 0.2374 0.3215 REMARK 3 6 4.9804 - 4.6869 1.00 2678 145 0.2329 0.2648 REMARK 3 7 4.6869 - 4.4522 1.00 2637 144 0.2456 0.3309 REMARK 3 8 4.4522 - 4.2585 1.00 2678 131 0.2725 0.2957 REMARK 3 9 4.2585 - 4.0946 1.00 2679 136 0.2833 0.3648 REMARK 3 10 4.0946 - 3.9533 1.00 2633 131 0.2922 0.3588 REMARK 3 11 3.9533 - 3.8297 1.00 2669 147 0.3044 0.3248 REMARK 3 12 3.8297 - 3.7202 1.00 2673 154 0.3226 0.4179 REMARK 3 13 3.7202 - 3.6223 1.00 2676 127 0.3270 0.3729 REMARK 3 14 3.6223 - 3.5339 1.00 2665 133 0.3474 0.4233 REMARK 3 15 3.5339 - 3.4536 1.00 2654 144 0.3740 0.3687 REMARK 3 16 3.4536 - 3.3801 1.00 2641 132 0.4011 0.4694 REMARK 3 17 3.3801 - 3.3125 1.00 2655 170 0.4103 0.4579 REMARK 3 18 3.3125 - 3.2500 1.00 2667 132 0.4133 0.4688 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.600 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 92.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6370 REMARK 3 ANGLE : 0.686 8649 REMARK 3 CHIRALITY : 0.044 969 REMARK 3 PLANARITY : 0.005 1109 REMARK 3 DIHEDRAL : 6.278 3828 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6PH4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1000242506. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9801 REMARK 200 MONOCHROMATOR : CRYOGENICALLY COOLED CHANNEL CUT REMARK 200 SI[111] CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : CONVEX PREFOCUSSING MIRROR AND A REMARK 200 KIRKPATRICK-BAEZ PAIR OF REMARK 200 FOCUSSING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26861 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.250 REMARK 200 RESOLUTION RANGE LOW (A) : 62.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 15.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3T50 AND 5EPV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% (V/V) MPD + 4% (W/V) PEG 4000 + REMARK 280 0.1 M HEPES, PH 7.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 47.97800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.41400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.33100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 82.41400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 47.97800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.33100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -110.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 14 REMARK 465 ALA A 15 REMARK 465 LEU A 16 REMARK 465 SER A 17 REMARK 465 MET A 331 REMARK 465 LEU A 332 REMARK 465 LEU A 333 REMARK 465 LYS A 334 REMARK 465 GLU A 335 REMARK 465 ASN A 336 REMARK 465 TRP A 337 REMARK 465 ALA A 338 REMARK 465 GLY A 339 REMARK 465 ALA A 340 REMARK 465 THR A 341 REMARK 465 ILE A 342 REMARK 465 GLN A 343 REMARK 465 GLN A 344 REMARK 465 ILE A 345 REMARK 465 CYS A 346 REMARK 465 ALA A 347 REMARK 465 THR A 348 REMARK 465 ALA A 349 REMARK 465 LEU A 350 REMARK 465 ALA A 351 REMARK 465 PRO A 352 REMARK 465 PHE A 353 REMARK 465 ASN A 354 REMARK 465 SER A 355 REMARK 465 THR A 356 REMARK 465 PHE A 357 REMARK 465 ALA A 358 REMARK 465 ASN A 359 REMARK 465 ARG A 360 REMARK 465 ILE A 361 REMARK 465 HIS A 362 REMARK 465 MET A 363 REMARK 465 SER A 364 REMARK 465 GLY A 365 REMARK 465 PRO A 366 REMARK 465 HIS A 367 REMARK 465 LEU A 368 REMARK 465 LEU A 369 REMARK 465 VAL A 370 REMARK 465 SER A 371 REMARK 465 ASP A 372 REMARK 465 ARG A 373 REMARK 465 VAL A 374 REMARK 465 THR A 375 REMARK 465 VAL A 376 REMARK 465 ALA A 377 REMARK 465 LEU A 378 REMARK 465 SER A 379 REMARK 465 LEU A 380 REMARK 465 ALA A 381 REMARK 465 PHE A 382 REMARK 465 TYR A 383 REMARK 465 GLU A 384 REMARK 465 LEU A 385 REMARK 465 ALA A 386 REMARK 465 THR A 387 REMARK 465 ASN A 388 REMARK 465 ALA A 389 REMARK 465 VAL A 390 REMARK 465 LYS A 391 REMARK 465 TYR A 392 REMARK 465 GLY A 393 REMARK 465 ALA A 394 REMARK 465 LEU A 395 REMARK 465 SER A 396 REMARK 465 ASN A 397 REMARK 465 GLU A 398 REMARK 465 LYS A 399 REMARK 465 GLY A 400 REMARK 465 VAL A 401 REMARK 465 ILE A 402 REMARK 465 ASN A 403 REMARK 465 ILE A 404 REMARK 465 THR A 405 REMARK 465 TRP A 406 REMARK 465 ALA A 407 REMARK 465 ILE A 408 REMARK 465 MET A 409 REMARK 465 GLU A 410 REMARK 465 ASP A 411 REMARK 465 LYS A 412 REMARK 465 GLY A 413 REMARK 465 GLU A 414 REMARK 465 LYS A 415 REMARK 465 LYS A 416 REMARK 465 PHE A 417 REMARK 465 HIS A 418 REMARK 465 MET A 419 REMARK 465 ARG A 420 REMARK 465 TRP A 421 REMARK 465 ALA A 422 REMARK 465 GLU A 423 REMARK 465 SER A 424 REMARK 465 ARG A 425 REMARK 465 GLY A 426 REMARK 465 PRO A 427 REMARK 465 GLU A 428 REMARK 465 VAL A 429 REMARK 465 MET A 430 REMARK 465 GLN A 431 REMARK 465 PRO A 432 REMARK 465 ALA A 433 REMARK 465 ARG A 434 REMARK 465 ARG A 435 REMARK 465 GLY A 436 REMARK 465 PHE A 437 REMARK 465 GLY A 438 REMARK 465 GLN A 439 REMARK 465 ARG A 440 REMARK 465 LEU A 441 REMARK 465 LEU A 442 REMARK 465 HIS A 443 REMARK 465 SER A 444 REMARK 465 VAL A 445 REMARK 465 LEU A 446 REMARK 465 ALA A 447 REMARK 465 GLU A 448 REMARK 465 GLU A 449 REMARK 465 LEU A 450 REMARK 465 LYS A 451 REMARK 465 ALA A 452 REMARK 465 LYS A 453 REMARK 465 CYS A 454 REMARK 465 ASP A 455 REMARK 465 VAL A 456 REMARK 465 GLU A 457 REMARK 465 PHE A 458 REMARK 465 ALA A 459 REMARK 465 ALA A 460 REMARK 465 SER A 461 REMARK 465 GLY A 462 REMARK 465 LEU A 463 REMARK 465 LEU A 464 REMARK 465 ILE A 465 REMARK 465 ASP A 466 REMARK 465 VAL A 467 REMARK 465 LEU A 468 REMARK 465 ALA A 469 REMARK 465 PRO A 470 REMARK 465 ILE A 471 REMARK 465 THR A 472 REMARK 465 PRO A 473 REMARK 465 GLU A 474 REMARK 465 VAL A 475 REMARK 465 PHE A 476 REMARK 465 PRO A 477 REMARK 465 GLY A 478 REMARK 465 MET A 479 REMARK 465 GLY A 480 REMARK 465 HIS A 481 REMARK 465 ASN A 482 REMARK 465 VAL A 483 REMARK 465 PRO A 484 REMARK 465 GLU A 485 REMARK 465 GLN A 486 REMARK 465 ARG A 487 REMARK 465 ILE A 488 REMARK 465 ALA A 489 REMARK 465 HIS A 490 REMARK 465 HIS A 491 REMARK 465 HIS A 492 REMARK 465 HIS A 493 REMARK 465 HIS A 494 REMARK 465 HIS A 495 REMARK 465 MET B 14 REMARK 465 ALA B 15 REMARK 465 LEU B 16 REMARK 465 SER B 17 REMARK 465 GLY B 478 REMARK 465 MET B 479 REMARK 465 GLY B 480 REMARK 465 HIS B 481 REMARK 465 ASN B 482 REMARK 465 VAL B 483 REMARK 465 PRO B 484 REMARK 465 GLU B 485 REMARK 465 GLN B 486 REMARK 465 ARG B 487 REMARK 465 ILE B 488 REMARK 465 ALA B 489 REMARK 465 HIS B 490 REMARK 465 HIS B 491 REMARK 465 HIS B 492 REMARK 465 HIS B 493 REMARK 465 HIS B 494 REMARK 465 HIS B 495 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 70 O3P FMN A 502 1.30 REMARK 500 OG1 THR A 176 OG1 THR A 185 2.17 REMARK 500 O GLU B 63 NH1 ARG B 67 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 19 58.62 177.57 REMARK 500 HIS A 40 32.63 -79.85 REMARK 500 ASP A 43 -7.29 72.91 REMARK 500 ASP A 62 7.11 -64.87 REMARK 500 CYS A 69 -3.97 -57.86 REMARK 500 ASN A 171 79.07 32.29 REMARK 500 ASP A 199 23.52 -148.10 REMARK 500 HIS A 203 -154.87 -133.25 REMARK 500 THR A 228 38.95 -90.55 REMARK 500 GLU A 258 -80.36 -62.87 REMARK 500 THR A 270 69.47 -60.94 REMARK 500 GLU A 271 -66.69 -176.71 REMARK 500 LYS A 273 -82.25 -89.96 REMARK 500 ARG A 284 1.15 -66.92 REMARK 500 GLU A 285 -8.31 -146.61 REMARK 500 PHE A 290 -19.65 -146.22 REMARK 500 ARG A 306 -28.48 -159.17 REMARK 500 PRO A 311 14.10 -65.50 REMARK 500 PHE A 318 -41.51 -152.09 REMARK 500 HIS A 329 -4.57 -140.03 REMARK 500 ASN B 44 76.00 44.20 REMARK 500 ARG B 70 -27.85 -36.63 REMARK 500 GLU B 107 109.86 -56.04 REMARK 500 ASN B 120 -163.37 -104.05 REMARK 500 GLN B 126 -23.02 -142.14 REMARK 500 VAL B 135 43.83 -81.80 REMARK 500 ALA B 170 -8.51 69.73 REMARK 500 ASN B 171 81.81 39.73 REMARK 500 GLU B 178 106.17 -56.26 REMARK 500 PRO B 198 -9.87 -50.27 REMARK 500 ASP B 199 24.65 -148.71 REMARK 500 ASP B 205 -73.42 -28.89 REMARK 500 ALA B 226 45.12 -66.11 REMARK 500 LYS B 253 110.13 -176.49 REMARK 500 GLU B 258 -73.18 -76.25 REMARK 500 ALA B 277 2.04 -61.27 REMARK 500 PHE B 290 -32.08 -130.45 REMARK 500 LEU B 305 30.34 -89.06 REMARK 500 ARG B 306 -158.59 -80.55 REMARK 500 ASN B 307 69.95 -66.86 REMARK 500 ASN B 336 76.80 -60.54 REMARK 500 ALA B 338 42.03 -84.02 REMARK 500 PHE B 357 60.50 -103.38 REMARK 500 LEU B 368 -164.63 -116.24 REMARK 500 LYS B 391 -73.31 -71.47 REMARK 500 ASP B 411 -72.52 -144.41 REMARK 500 LYS B 412 44.61 -85.46 REMARK 500 MET B 430 -155.00 -77.88 REMARK 500 LEU B 446 -33.34 -134.07 REMARK 500 PRO B 473 11.77 -53.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 384 OE1 REMARK 620 2 ASN B 388 OD1 108.6 REMARK 620 3 ACP B 505 O3G 85.9 165.5 REMARK 620 4 ACP B 505 O2B 158.2 90.1 75.8 REMARK 620 5 ACP B 505 O2A 107.0 81.0 95.5 63.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACP B 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3T50 RELATED DB: PDB REMARK 900 ONE DOMAIN OF THIS PROTEIN REMARK 900 RELATED ID: 5EPV RELATED DB: PDB REMARK 900 ONE DOMAIN OF THIS PROTEIN DBREF 6PH4 A 15 489 UNP Q8YC53 LOVHK_BRUME 15 489 DBREF 6PH4 B 15 489 UNP Q8YC53 LOVHK_BRUME 15 489 SEQADV 6PH4 MET A 14 UNP Q8YC53 INITIATING METHIONINE SEQADV 6PH4 HIS A 490 UNP Q8YC53 EXPRESSION TAG SEQADV 6PH4 HIS A 491 UNP Q8YC53 EXPRESSION TAG SEQADV 6PH4 HIS A 492 UNP Q8YC53 EXPRESSION TAG SEQADV 6PH4 HIS A 493 UNP Q8YC53 EXPRESSION TAG SEQADV 6PH4 HIS A 494 UNP Q8YC53 EXPRESSION TAG SEQADV 6PH4 HIS A 495 UNP Q8YC53 EXPRESSION TAG SEQADV 6PH4 MET B 14 UNP Q8YC53 INITIATING METHIONINE SEQADV 6PH4 HIS B 490 UNP Q8YC53 EXPRESSION TAG SEQADV 6PH4 HIS B 491 UNP Q8YC53 EXPRESSION TAG SEQADV 6PH4 HIS B 492 UNP Q8YC53 EXPRESSION TAG SEQADV 6PH4 HIS B 493 UNP Q8YC53 EXPRESSION TAG SEQADV 6PH4 HIS B 494 UNP Q8YC53 EXPRESSION TAG SEQADV 6PH4 HIS B 495 UNP Q8YC53 EXPRESSION TAG SEQRES 1 A 482 MET ALA LEU SER GLN ALA THR ASP PRO PHE ARG ALA ALA SEQRES 2 A 482 VAL GLU PHE THR LEU MET PRO MET LEU ILE THR ASN PRO SEQRES 3 A 482 HIS LEU PRO ASP ASN PRO ILE VAL PHE ALA ASN PRO ALA SEQRES 4 A 482 PHE LEU LYS LEU THR GLY TYR GLU ALA ASP GLU VAL MET SEQRES 5 A 482 GLY ARG ASN CYS ARG PHE LEU GLN GLY HIS GLY THR ASP SEQRES 6 A 482 PRO ALA HIS VAL ARG ALA ILE LYS SER ALA ILE ALA ALA SEQRES 7 A 482 GLU LYS PRO ILE ASP ILE ASP ILE ILE ASN TYR LYS LYS SEQRES 8 A 482 SER GLY GLU ALA PHE TRP ASN ARG LEU HIS ILE SER PRO SEQRES 9 A 482 VAL HIS ASN ALA ASN GLY ARG LEU GLN HIS PHE VAL SER SEQRES 10 A 482 SER GLN LEU ASP VAL THR LEU GLU LEU SER ARG LEU VAL SEQRES 11 A 482 GLU LEU GLU LYS GLU ARG LYS THR LEU SER ILE GLU THR SEQRES 12 A 482 ALA ARG SER LYS ASP GLN LEU ASP TYR ILE VAL GLU VAL SEQRES 13 A 482 ALA ASN ILE GLY PHE TRP THR ARG GLU PHE TYR SER GLY SEQRES 14 A 482 LYS MET THR CYS SER ALA GLU CYS ARG ARG ILE TYR GLY SEQRES 15 A 482 PHE THR PRO ASP GLU PRO VAL HIS PHE ASP THR ILE LEU SEQRES 16 A 482 ASP LEU VAL VAL LEU GLU ASP ARG MET THR VAL VAL GLN SEQRES 17 A 482 LYS ALA HIS GLN ALA VAL THR GLY GLU PRO TYR SER ILE SEQRES 18 A 482 GLU TYR ARG ILE VAL THR ARG LEU GLY GLU THR ARG TRP SEQRES 19 A 482 LEU GLU THR ARG ALA LYS ALA LEU THR GLY GLU ASN PRO SEQRES 20 A 482 LEU VAL LEU GLY ILE VAL GLN ASP VAL THR GLU ARG LYS SEQRES 21 A 482 LYS ALA GLU ALA ASN LYS ALA LEU VAL SER ARG GLU ILE SEQRES 22 A 482 ALA HIS ARG PHE LYS ASN SER MET ALA MET VAL GLN SER SEQRES 23 A 482 ILE ALA ASN GLN THR LEU ARG ASN THR TYR ASP PRO GLU SEQRES 24 A 482 GLN ALA ASN ARG LEU PHE SER GLU ARG LEU ARG ALA LEU SEQRES 25 A 482 SER GLN ALA HIS ASP MET LEU LEU LYS GLU ASN TRP ALA SEQRES 26 A 482 GLY ALA THR ILE GLN GLN ILE CYS ALA THR ALA LEU ALA SEQRES 27 A 482 PRO PHE ASN SER THR PHE ALA ASN ARG ILE HIS MET SER SEQRES 28 A 482 GLY PRO HIS LEU LEU VAL SER ASP ARG VAL THR VAL ALA SEQRES 29 A 482 LEU SER LEU ALA PHE TYR GLU LEU ALA THR ASN ALA VAL SEQRES 30 A 482 LYS TYR GLY ALA LEU SER ASN GLU LYS GLY VAL ILE ASN SEQRES 31 A 482 ILE THR TRP ALA ILE MET GLU ASP LYS GLY GLU LYS LYS SEQRES 32 A 482 PHE HIS MET ARG TRP ALA GLU SER ARG GLY PRO GLU VAL SEQRES 33 A 482 MET GLN PRO ALA ARG ARG GLY PHE GLY GLN ARG LEU LEU SEQRES 34 A 482 HIS SER VAL LEU ALA GLU GLU LEU LYS ALA LYS CYS ASP SEQRES 35 A 482 VAL GLU PHE ALA ALA SER GLY LEU LEU ILE ASP VAL LEU SEQRES 36 A 482 ALA PRO ILE THR PRO GLU VAL PHE PRO GLY MET GLY HIS SEQRES 37 A 482 ASN VAL PRO GLU GLN ARG ILE ALA HIS HIS HIS HIS HIS SEQRES 38 A 482 HIS SEQRES 1 B 482 MET ALA LEU SER GLN ALA THR ASP PRO PHE ARG ALA ALA SEQRES 2 B 482 VAL GLU PHE THR LEU MET PRO MET LEU ILE THR ASN PRO SEQRES 3 B 482 HIS LEU PRO ASP ASN PRO ILE VAL PHE ALA ASN PRO ALA SEQRES 4 B 482 PHE LEU LYS LEU THR GLY TYR GLU ALA ASP GLU VAL MET SEQRES 5 B 482 GLY ARG ASN CYS ARG PHE LEU GLN GLY HIS GLY THR ASP SEQRES 6 B 482 PRO ALA HIS VAL ARG ALA ILE LYS SER ALA ILE ALA ALA SEQRES 7 B 482 GLU LYS PRO ILE ASP ILE ASP ILE ILE ASN TYR LYS LYS SEQRES 8 B 482 SER GLY GLU ALA PHE TRP ASN ARG LEU HIS ILE SER PRO SEQRES 9 B 482 VAL HIS ASN ALA ASN GLY ARG LEU GLN HIS PHE VAL SER SEQRES 10 B 482 SER GLN LEU ASP VAL THR LEU GLU LEU SER ARG LEU VAL SEQRES 11 B 482 GLU LEU GLU LYS GLU ARG LYS THR LEU SER ILE GLU THR SEQRES 12 B 482 ALA ARG SER LYS ASP GLN LEU ASP TYR ILE VAL GLU VAL SEQRES 13 B 482 ALA ASN ILE GLY PHE TRP THR ARG GLU PHE TYR SER GLY SEQRES 14 B 482 LYS MET THR CYS SER ALA GLU CYS ARG ARG ILE TYR GLY SEQRES 15 B 482 PHE THR PRO ASP GLU PRO VAL HIS PHE ASP THR ILE LEU SEQRES 16 B 482 ASP LEU VAL VAL LEU GLU ASP ARG MET THR VAL VAL GLN SEQRES 17 B 482 LYS ALA HIS GLN ALA VAL THR GLY GLU PRO TYR SER ILE SEQRES 18 B 482 GLU TYR ARG ILE VAL THR ARG LEU GLY GLU THR ARG TRP SEQRES 19 B 482 LEU GLU THR ARG ALA LYS ALA LEU THR GLY GLU ASN PRO SEQRES 20 B 482 LEU VAL LEU GLY ILE VAL GLN ASP VAL THR GLU ARG LYS SEQRES 21 B 482 LYS ALA GLU ALA ASN LYS ALA LEU VAL SER ARG GLU ILE SEQRES 22 B 482 ALA HIS ARG PHE LYS ASN SER MET ALA MET VAL GLN SER SEQRES 23 B 482 ILE ALA ASN GLN THR LEU ARG ASN THR TYR ASP PRO GLU SEQRES 24 B 482 GLN ALA ASN ARG LEU PHE SER GLU ARG LEU ARG ALA LEU SEQRES 25 B 482 SER GLN ALA HIS ASP MET LEU LEU LYS GLU ASN TRP ALA SEQRES 26 B 482 GLY ALA THR ILE GLN GLN ILE CYS ALA THR ALA LEU ALA SEQRES 27 B 482 PRO PHE ASN SER THR PHE ALA ASN ARG ILE HIS MET SER SEQRES 28 B 482 GLY PRO HIS LEU LEU VAL SER ASP ARG VAL THR VAL ALA SEQRES 29 B 482 LEU SER LEU ALA PHE TYR GLU LEU ALA THR ASN ALA VAL SEQRES 30 B 482 LYS TYR GLY ALA LEU SER ASN GLU LYS GLY VAL ILE ASN SEQRES 31 B 482 ILE THR TRP ALA ILE MET GLU ASP LYS GLY GLU LYS LYS SEQRES 32 B 482 PHE HIS MET ARG TRP ALA GLU SER ARG GLY PRO GLU VAL SEQRES 33 B 482 MET GLN PRO ALA ARG ARG GLY PHE GLY GLN ARG LEU LEU SEQRES 34 B 482 HIS SER VAL LEU ALA GLU GLU LEU LYS ALA LYS CYS ASP SEQRES 35 B 482 VAL GLU PHE ALA ALA SER GLY LEU LEU ILE ASP VAL LEU SEQRES 36 B 482 ALA PRO ILE THR PRO GLU VAL PHE PRO GLY MET GLY HIS SEQRES 37 B 482 ASN VAL PRO GLU GLN ARG ILE ALA HIS HIS HIS HIS HIS SEQRES 38 B 482 HIS HET CL A 501 1 HET FMN A 502 31 HET CL B 501 1 HET CL B 502 1 HET MG B 503 1 HET FMN B 504 31 HET ACP B 505 31 HETNAM CL CHLORIDE ION HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM MG MAGNESIUM ION HETNAM ACP PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN ACP ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE FORMUL 3 CL 3(CL 1-) FORMUL 4 FMN 2(C17 H21 N4 O9 P) FORMUL 7 MG MG 2+ FORMUL 9 ACP C11 H18 N5 O12 P3 HELIX 1 AA1 ASP A 21 THR A 30 1 10 HELIX 2 AA2 ASN A 50 THR A 57 1 8 HELIX 3 AA3 GLU A 60 VAL A 64 5 5 HELIX 4 AA4 ASN A 68 GLN A 73 5 6 HELIX 5 AA5 ASP A 78 GLU A 92 1 15 HELIX 6 AA6 LEU A 137 LEU A 145 1 9 HELIX 7 AA7 THR A 151 ALA A 170 1 20 HELIX 8 AA8 SER A 187 TYR A 194 1 8 HELIX 9 AA9 HIS A 203 ASP A 209 1 7 HELIX 10 AB1 VAL A 212 GLU A 214 5 3 HELIX 11 AB2 ASP A 215 LYS A 222 1 8 HELIX 12 AB3 ALA A 275 ALA A 287 1 13 HELIX 13 AB4 PHE A 290 GLN A 298 1 9 HELIX 14 AB5 SER A 299 THR A 304 5 6 HELIX 15 AB6 LEU A 322 GLN A 327 1 6 HELIX 16 AB7 ASP B 21 THR B 30 1 10 HELIX 17 AB8 ASN B 50 GLY B 58 1 9 HELIX 18 AB9 GLU B 60 MET B 65 5 6 HELIX 19 AC1 ASN B 68 GLN B 73 5 6 HELIX 20 AC2 ALA B 80 GLU B 92 1 13 HELIX 21 AC3 LEU B 137 VAL B 169 1 33 HELIX 22 AC4 SER B 187 TYR B 194 1 8 HELIX 23 AC5 HIS B 203 ASP B 209 1 7 HELIX 24 AC6 LEU B 210 VAL B 211 5 2 HELIX 25 AC7 VAL B 212 GLU B 214 5 3 HELIX 26 AC8 ASP B 215 HIS B 224 1 10 HELIX 27 AC9 VAL B 269 ALA B 287 1 19 HELIX 28 AD1 MET B 296 THR B 304 1 9 HELIX 29 AD2 GLN B 313 SER B 326 1 14 HELIX 30 AD3 ASP B 330 LYS B 334 5 5 HELIX 31 AD4 THR B 341 ALA B 349 1 9 HELIX 32 AD5 PRO B 352 PHE B 357 1 6 HELIX 33 AD6 SER B 371 TYR B 392 1 22 HELIX 34 AD7 PHE B 437 LEU B 442 1 6 SHEET 1 AA1 5 ILE A 46 ALA A 49 0 SHEET 2 AA1 5 MET A 34 THR A 37 -1 N ILE A 36 O VAL A 47 SHEET 3 AA1 5 LEU A 125 ASP A 134 -1 O PHE A 128 N THR A 37 SHEET 4 AA1 5 ALA A 108 HIS A 119 -1 N SER A 116 O VAL A 129 SHEET 5 AA1 5 ILE A 95 TYR A 102 -1 N ILE A 97 O LEU A 113 SHEET 1 AA2 5 MET A 184 CYS A 186 0 SHEET 2 AA2 5 GLY A 173 GLU A 178 -1 N THR A 176 O THR A 185 SHEET 3 AA2 5 LEU A 261 ASP A 268 -1 O VAL A 262 N ARG A 177 SHEET 4 AA2 5 THR A 245 LEU A 255 -1 N ARG A 251 O ILE A 265 SHEET 5 AA2 5 TYR A 232 VAL A 239 -1 N ILE A 234 O THR A 250 SHEET 1 AA3 5 ILE B 46 ALA B 49 0 SHEET 2 AA3 5 MET B 34 THR B 37 -1 N ILE B 36 O PHE B 48 SHEET 3 AA3 5 LEU B 125 ASP B 134 -1 O PHE B 128 N THR B 37 SHEET 4 AA3 5 ALA B 108 HIS B 119 -1 N SER B 116 O VAL B 129 SHEET 5 AA3 5 ILE B 95 TYR B 102 -1 N ILE B 99 O ASN B 111 SHEET 1 AA4 5 MET B 184 CYS B 186 0 SHEET 2 AA4 5 ILE B 172 GLU B 178 -1 N THR B 176 O THR B 185 SHEET 3 AA4 5 LEU B 261 ASP B 268 -1 O VAL B 266 N GLY B 173 SHEET 4 AA4 5 THR B 245 LEU B 255 -1 N ARG B 251 O ILE B 265 SHEET 5 AA4 5 SER B 233 VAL B 239 -1 N ILE B 238 O ARG B 246 SHEET 1 AA5 5 ILE B 361 SER B 364 0 SHEET 2 AA5 5 VAL B 401 MET B 409 1 O ILE B 402 N HIS B 362 SHEET 3 AA5 5 LYS B 416 SER B 424 -1 O ALA B 422 N ASN B 403 SHEET 4 AA5 5 LEU B 463 ALA B 469 -1 O ALA B 469 N PHE B 417 SHEET 5 AA5 5 ASP B 455 PHE B 458 -1 N GLU B 457 O LEU B 464 LINK OE1 GLU B 384 MG MG B 503 1555 1555 2.20 LINK OD1 ASN B 388 MG MG B 503 1555 1555 1.98 LINK MG MG B 503 O3G ACP B 505 1555 1555 2.04 LINK MG MG B 503 O2B ACP B 505 1555 1555 2.76 LINK MG MG B 503 O2A ACP B 505 1555 1555 2.35 SITE 1 AC1 2 TRP A 175 ARG A 177 SITE 1 AC2 14 THR A 37 ASN A 68 CYS A 69 ARG A 70 SITE 2 AC2 14 GLN A 73 VAL A 82 ILE A 85 LYS A 86 SITE 3 AC2 14 ILE A 89 ASN A 101 LEU A 113 ILE A 115 SITE 4 AC2 14 PHE A 128 SER A 130 SITE 1 AC3 3 GLU B 384 ASN B 388 ACP B 505 SITE 1 AC4 14 ASN B 68 CYS B 69 ARG B 70 GLN B 73 SITE 2 AC4 14 VAL B 82 LYS B 86 ILE B 89 ASN B 101 SITE 3 AC4 14 ASN B 111 LEU B 113 ILE B 115 PHE B 128 SITE 4 AC4 14 SER B 130 GLN B 132 SITE 1 AC5 15 ARG B 321 GLU B 384 ASN B 388 LYS B 391 SITE 2 AC5 15 TYR B 392 GLY B 393 GLU B 423 VAL B 429 SITE 3 AC5 15 PRO B 432 GLY B 436 PHE B 437 GLY B 438 SITE 4 AC5 15 GLN B 439 LEU B 463 MG B 503 CRYST1 95.956 104.662 164.828 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010421 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009555 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006067 0.00000