HEADER BIOSYNTHETIC PROTEIN 25-JUN-19 6PH9 TITLE CRYSTAL STRUCTURE OF THE KLEBSIELLA PNEUMONIAE LPXH-LIPID X COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-2,3-DIACYLGLUCOSAMINE HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UDP-2,3-DIACYLGLUCOSAMINE DIPHOSPHATASE; COMPND 5 EC: 3.6.1.54; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: LPXH_1, LPXH, C3483_19950, NCTC9128_00880, SOURCE 5 SAMEA104305404_03891; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LIPID A, LPXH, LIPID X, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.CHO,P.ZHOU REVDAT 4 11-OCT-23 6PH9 1 LINK REVDAT 3 11-MAR-20 6PH9 1 JRNL REVDAT 2 26-FEB-20 6PH9 1 JRNL REVDAT 1 12-FEB-20 6PH9 0 JRNL AUTH J.CHO,M.LEE,C.S.COCHRANE,C.G.WEBSTER,B.A.FENTON,J.ZHAO, JRNL AUTH 2 J.HONG,P.ZHOU JRNL TITL STRUCTURAL BASIS OF THE UDP-DIACYLGLUCOSAMINE JRNL TITL 2 PYROPHOSPHOHYDROLASE LPXH INHIBITION BY SULFONYL PIPERAZINE JRNL TITL 3 ANTIBIOTICS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 4109 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 32041866 JRNL DOI 10.1073/PNAS.1912876117 REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 26251 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1313 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.9081 - 3.9930 1.00 2890 153 0.1682 0.1711 REMARK 3 2 3.9930 - 3.1696 1.00 2796 147 0.1552 0.1774 REMARK 3 3 3.1696 - 2.7690 1.00 2766 146 0.1794 0.2088 REMARK 3 4 2.7690 - 2.5159 1.00 2758 145 0.1822 0.1992 REMARK 3 5 2.5159 - 2.3355 1.00 2772 146 0.1892 0.2427 REMARK 3 6 2.3355 - 2.1978 1.00 2730 144 0.1924 0.2071 REMARK 3 7 2.1978 - 2.0878 1.00 2753 145 0.2001 0.2553 REMARK 3 8 2.0878 - 1.9969 1.00 2734 143 0.2343 0.2713 REMARK 3 9 1.9969 - 1.9200 1.00 2739 144 0.3138 0.3771 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2093 REMARK 3 ANGLE : 0.538 2840 REMARK 3 CHIRALITY : 0.043 308 REMARK 3 PLANARITY : 0.003 369 REMARK 3 DIHEDRAL : 5.617 1642 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6PH9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1000242518. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26262 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 45.895 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 19.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.0300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5K8K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4 MG/ML PROTEIN, 10 MM MES, PH 6.0, REMARK 280 100 MM NACL, 0.5 MM DTT, 2.5% GLYCEROL, 100MM CALCIUM CHLORIDE REMARK 280 DIHYDRATE, 50MM HEPES, PH 7.0, 16.5% PEG 400, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.04667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.52333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 17.52333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 35.04667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MN MN A 304 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 244 REMARK 465 LEU A 245 REMARK 465 TYR A 246 REMARK 465 PHE A 247 REMARK 465 GLN A 248 REMARK 465 SER A 249 REMARK 465 HIS A 250 REMARK 465 HIS A 251 REMARK 465 HIS A 252 REMARK 465 HIS A 253 REMARK 465 HIS A 254 REMARK 465 HIS A 255 REMARK 465 HIS A 256 REMARK 465 HIS A 257 REMARK 465 HIS A 258 REMARK 465 HIS A 259 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 27 CD OE1 NE2 REMARK 470 GLN A 57 CD OE1 NE2 REMARK 470 GLN A 123 CD OE1 NE2 REMARK 470 ARG A 155 NE CZ NH1 NH2 REMARK 470 LYS A 161 CG CD CE NZ REMARK 470 SER A 166 OG REMARK 470 MET A 169 CG SD CE REMARK 470 GLU A 170 CG CD OE1 OE2 REMARK 470 ILE A 171 CG1 CG2 CD1 REMARK 470 GLU A 242 CG CD OE1 OE2 REMARK 470 GLU A 243 CA C O CB CG CD OE1 REMARK 470 GLU A 243 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 39 43.27 -90.38 REMARK 500 HIS A 195 -48.50 74.36 REMARK 500 HIS A 220 -76.29 -102.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 605 DISTANCE = 5.94 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 8 OD1 REMARK 620 2 HIS A 10 NE2 125.3 REMARK 620 3 ASP A 41 OD2 82.9 93.8 REMARK 620 4 HIS A 197 NE2 99.1 97.5 164.4 REMARK 620 5 HOH A 415 O 103.4 124.5 65.1 99.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 41 OD2 REMARK 620 2 ASN A 79 OD1 95.6 REMARK 620 3 HIS A 114 NE2 93.8 96.7 REMARK 620 4 HIS A 195 ND1 168.0 91.0 95.3 REMARK 620 5 HOH A 415 O 78.8 121.4 141.6 89.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 308 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 170 O REMARK 620 2 ASP A 173 OD1 85.4 REMARK 620 3 HOH A 403 O 90.5 75.0 REMARK 620 4 HOH A 448 O 108.3 81.2 148.4 REMARK 620 5 HOH A 500 O 82.6 148.4 75.9 130.4 REMARK 620 6 HOH A 559 O 92.9 151.5 133.5 72.3 58.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 303 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 459 O REMARK 620 2 HOH A 520 O 78.1 REMARK 620 3 HOH A 547 O 113.4 49.8 REMARK 620 4 HOH A 578 O 134.1 138.3 89.0 REMARK 620 5 HOH A 584 O 80.9 157.0 150.9 64.6 REMARK 620 6 HOH A 590 O 128.5 78.6 83.5 92.0 107.9 REMARK 620 7 HOH A 596 O 78.4 84.0 124.0 122.8 82.6 54.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 304 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 497 O REMARK 620 2 HOH A 497 O 80.7 REMARK 620 3 HOH A 511 O 75.7 83.1 REMARK 620 4 HOH A 511 O 83.7 76.0 152.8 REMARK 620 5 HOH A 544 O 90.1 170.6 96.6 101.1 REMARK 620 6 HOH A 544 O 170.0 89.8 100.2 97.1 99.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LP5 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 309 DBREF1 6PH9 A 0 240 UNP A0A1S0WIC1_KLEPN DBREF2 6PH9 A A0A1S0WIC1 1 240 SEQADV 6PH9 VAL A 1 UNP A0A1S0WIC INSERTION SEQADV 6PH9 LEU A 241 UNP A0A1S0WIC EXPRESSION TAG SEQADV 6PH9 GLU A 242 UNP A0A1S0WIC EXPRESSION TAG SEQADV 6PH9 GLU A 243 UNP A0A1S0WIC EXPRESSION TAG SEQADV 6PH9 ASN A 244 UNP A0A1S0WIC EXPRESSION TAG SEQADV 6PH9 LEU A 245 UNP A0A1S0WIC EXPRESSION TAG SEQADV 6PH9 TYR A 246 UNP A0A1S0WIC EXPRESSION TAG SEQADV 6PH9 PHE A 247 UNP A0A1S0WIC EXPRESSION TAG SEQADV 6PH9 GLN A 248 UNP A0A1S0WIC EXPRESSION TAG SEQADV 6PH9 SER A 249 UNP A0A1S0WIC EXPRESSION TAG SEQADV 6PH9 HIS A 250 UNP A0A1S0WIC EXPRESSION TAG SEQADV 6PH9 HIS A 251 UNP A0A1S0WIC EXPRESSION TAG SEQADV 6PH9 HIS A 252 UNP A0A1S0WIC EXPRESSION TAG SEQADV 6PH9 HIS A 253 UNP A0A1S0WIC EXPRESSION TAG SEQADV 6PH9 HIS A 254 UNP A0A1S0WIC EXPRESSION TAG SEQADV 6PH9 HIS A 255 UNP A0A1S0WIC EXPRESSION TAG SEQADV 6PH9 HIS A 256 UNP A0A1S0WIC EXPRESSION TAG SEQADV 6PH9 HIS A 257 UNP A0A1S0WIC EXPRESSION TAG SEQADV 6PH9 HIS A 258 UNP A0A1S0WIC EXPRESSION TAG SEQADV 6PH9 HIS A 259 UNP A0A1S0WIC EXPRESSION TAG SEQRES 1 A 260 MET VAL ALA THR LEU PHE ILE ALA ASP LEU HIS LEU GLN SEQRES 2 A 260 THR GLU GLU PRO ALA ILE THR ALA GLY PHE LEU ARG PHE SEQRES 3 A 260 LEU GLN GLY GLU ALA ARG GLN ALA ASP ALA LEU TYR ILE SEQRES 4 A 260 LEU GLY ASP LEU PHE GLU ALA TRP ILE GLY ASP ASP ASP SEQRES 5 A 260 PRO ASN PRO LEU HIS GLN GLN ILE ALA SER ALA ILE LYS SEQRES 6 A 260 ALA VAL VAL ASP ALA GLY VAL PRO CYS TYR PHE ILE HIS SEQRES 7 A 260 GLY ASN ARG ASP PHE LEU VAL GLY GLN ARG PHE ALA ARG SEQRES 8 A 260 GLN SER GLY MET ILE LEU LEU ALA GLU GLU GLU ARG LEU SEQRES 9 A 260 ASP LEU TYR GLY ARG GLU VAL LEU ILE MET HIS GLY ASP SEQRES 10 A 260 THR LEU CYS THR ASP ASP GLN GLY TYR LEU ALA PHE ARG SEQRES 11 A 260 ALA LYS VAL HIS THR PRO TRP ILE GLN ARG LEU PHE LEU SEQRES 12 A 260 ALA LEU PRO LEU PHE ILE ARG HIS ARG ILE ALA ALA ARG SEQRES 13 A 260 MET ARG ALA ASP SER LYS ALA ALA ASN SER SER LYS SER SEQRES 14 A 260 MET GLU ILE MET ASP VAL ASN PRO GLN ALA VAL VAL ASP SEQRES 15 A 260 ALA MET GLU ARG HIS HIS VAL GLN TRP LEU ILE HIS GLY SEQRES 16 A 260 HIS THR HIS ARG PRO ALA VAL HIS GLU LEU GLN ALA ASN SEQRES 17 A 260 GLY GLN PRO ALA TRP ARG VAL VAL LEU GLY ALA TRP HIS SEQRES 18 A 260 SER GLU GLY SER MET VAL LYS VAL THR PRO ASP ASP VAL SEQRES 19 A 260 GLU LEU ILE HIS PHE PRO PHE LEU GLU GLU ASN LEU TYR SEQRES 20 A 260 PHE GLN SER HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS HET MN A 301 1 HET MN A 302 1 HET MN A 303 1 HET MN A 304 1 HET LP5 A 305 48 HET PG4 A 306 13 HET PG4 A 307 13 HET CA A 308 1 HET EDO A 309 4 HETNAM MN MANGANESE (II) ION HETNAM LP5 (R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5- HETNAM 2 LP5 ((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY) HETNAM 3 LP5 TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MN 4(MN 2+) FORMUL 6 LP5 C34 H66 N O12 P FORMUL 7 PG4 2(C8 H18 O5) FORMUL 9 CA CA 2+ FORMUL 10 EDO C2 H6 O2 FORMUL 11 HOH *205(H2 O) HELIX 1 AA1 GLU A 15 GLN A 27 1 13 HELIX 2 AA2 GLY A 28 ALA A 33 5 6 HELIX 3 AA3 ASN A 53 ALA A 69 1 17 HELIX 4 AA4 GLY A 85 GLY A 93 1 9 HELIX 5 AA5 GLY A 115 CYS A 119 5 5 HELIX 6 AA6 ASP A 122 HIS A 133 1 12 HELIX 7 AA7 THR A 134 LEU A 144 1 11 HELIX 8 AA8 PRO A 145 LYS A 167 1 23 HELIX 9 AA9 SER A 168 ASP A 173 1 6 HELIX 10 AB1 ASN A 175 HIS A 186 1 12 SHEET 1 AA1 6 ILE A 95 LEU A 96 0 SHEET 2 AA1 6 CYS A 73 PHE A 75 1 N CYS A 73 O ILE A 95 SHEET 3 AA1 6 ALA A 35 ILE A 38 1 N ILE A 38 O TYR A 74 SHEET 4 AA1 6 THR A 3 ILE A 6 1 N LEU A 4 O TYR A 37 SHEET 5 AA1 6 GLU A 222 VAL A 228 -1 O VAL A 228 N THR A 3 SHEET 6 AA1 6 VAL A 233 PRO A 239 -1 O ILE A 236 N MET A 225 SHEET 1 AA2 5 GLU A 101 LEU A 105 0 SHEET 2 AA2 5 ARG A 108 ILE A 112 -1 O VAL A 110 N LEU A 103 SHEET 3 AA2 5 TRP A 190 HIS A 193 1 O ILE A 192 N LEU A 111 SHEET 4 AA2 5 GLN A 209 VAL A 215 1 O VAL A 214 N LEU A 191 SHEET 5 AA2 5 ALA A 200 ALA A 206 -1 N HIS A 202 O ARG A 213 LINK OD1 ASP A 8 MN MN A 301 1555 1555 1.87 LINK NE2 HIS A 10 MN MN A 301 1555 1555 2.25 LINK OD2 ASP A 41 MN MN A 301 1555 1555 2.55 LINK OD2 ASP A 41 MN MN A 302 1555 1555 2.11 LINK OD1 ASN A 79 MN MN A 302 1555 1555 1.99 LINK NE2 HIS A 114 MN MN A 302 1555 1555 2.16 LINK O GLU A 170 CA CA A 308 1555 1555 2.39 LINK OD1 ASP A 173 CA CA A 308 1555 1555 2.62 LINK ND1 HIS A 195 MN MN A 302 1555 1555 2.27 LINK NE2 HIS A 197 MN MN A 301 1555 1555 2.25 LINK MN MN A 301 O HOH A 415 1555 1555 2.16 LINK MN MN A 302 O HOH A 415 1555 1555 1.90 LINK MN MN A 303 O HOH A 459 1555 1555 2.55 LINK MN MN A 303 O HOH A 520 1555 1555 2.45 LINK MN MN A 303 O AHOH A 547 1555 1555 2.78 LINK MN MN A 303 O HOH A 578 1555 1555 2.60 LINK MN MN A 303 O HOH A 584 1555 1555 2.34 LINK MN MN A 303 O HOH A 590 1555 3565 2.79 LINK MN MN A 303 O HOH A 596 1555 1555 2.52 LINK MN MN A 304 O HOH A 497 1555 1555 2.43 LINK MN MN A 304 O HOH A 497 1555 6554 2.44 LINK MN MN A 304 O HOH A 511 1555 1555 2.54 LINK MN MN A 304 O HOH A 511 1555 6554 2.52 LINK MN MN A 304 O HOH A 544 1555 1555 2.13 LINK MN MN A 304 O HOH A 544 1555 6554 2.14 LINK CA CA A 308 O HOH A 403 1555 1555 2.52 LINK CA CA A 308 O HOH A 448 1555 1555 2.61 LINK CA CA A 308 O HOH A 500 1555 1555 2.75 LINK CA CA A 308 O HOH A 559 1555 1555 2.41 SITE 1 AC1 6 ASP A 8 HIS A 10 ASP A 41 HIS A 197 SITE 2 AC1 6 MN A 302 HOH A 415 SITE 1 AC2 7 ASP A 8 ASP A 41 ASN A 79 HIS A 114 SITE 2 AC2 7 HIS A 195 MN A 301 HOH A 415 SITE 1 AC3 7 HOH A 459 HOH A 520 HOH A 547 HOH A 578 SITE 2 AC3 7 HOH A 584 HOH A 590 HOH A 596 SITE 1 AC4 3 HOH A 497 HOH A 511 HOH A 544 SITE 1 AC5 21 TRP A 46 ASN A 79 ARG A 80 LEU A 83 SITE 2 AC5 21 ASP A 122 TYR A 125 PHE A 128 TRP A 136 SITE 3 AC5 21 MET A 156 ARG A 157 SER A 160 ALA A 163 SITE 4 AC5 21 ASN A 164 LYS A 167 MET A 172 HIS A 195 SITE 5 AC5 21 HOH A 412 HOH A 435 HOH A 436 HOH A 438 SITE 6 AC5 21 HOH A 444 SITE 1 AC6 1 HOH A 513 SITE 1 AC7 7 GLU A 99 THR A 117 ARG A 129 ALA A 178 SITE 2 AC7 7 ALA A 182 ARG A 185 HOH A 509 SITE 1 AC8 6 GLU A 170 ASP A 173 HOH A 403 HOH A 448 SITE 2 AC8 6 HOH A 500 HOH A 559 SITE 1 AC9 1 TYR A 37 CRYST1 105.990 105.990 52.570 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009435 0.005447 0.000000 0.00000 SCALE2 0.000000 0.010894 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019022 0.00000