HEADER TRANSFERASE/TRANSFERASE INHIBITOR 28-JUN-19 6PK6 TITLE HUMAN PRPF4B BOUND TO BENZOTHIOPHENE INHIBITOR 329 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PRP4 HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PRP4 KINASE,PRP4 PRE-MRNA-PROCESSING FACTOR 4 HOMOLOG; COMPND 5 EC: 2.7.11.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRPF4B, KIAA0536, PRP4, PRP4H, PRP4K; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SERINE/THREONINE-PROTEIN KINASE PRP4 HOMOLOG, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC, TRANSFERASE, SPLICING KINASE PRPF4B, TRANSFERASE- KEYWDS 3 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.H.C.GODOI,A.S.SANTIAGO,A.M.FALA,P.Z.RAMOS,D.SRIRANGANADANE, AUTHOR 2 A.MASCARELLO,N.SEGRETTI,H.AZEVEDO,C.R.W.GUIMARAES,P.ARRUDA, AUTHOR 3 J.M.ELKINS,R.M.COUNAGO,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 15-NOV-23 6PK6 1 REMARK REVDAT 3 11-OCT-23 6PK6 1 REMARK REVDAT 2 01-JAN-20 6PK6 1 REMARK REVDAT 1 28-AUG-19 6PK6 0 JRNL AUTH P.H.C.GODOI,A.S.SANTIAGO,A.M.FALA,P.Z.RAMOS, JRNL AUTH 2 D.SRIRANGANADANE,A.MASCARELLO,N.SEGRETTI,H.AZEVEDO, JRNL AUTH 3 C.R.W.GUIMARAES,P.ARRUDA,J.M.ELKINS,R.M.COUNAGO JRNL TITL TO BE PUBLISHED JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 27219 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1442 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1994 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2780 REMARK 3 BIN FREE R VALUE SET COUNT : 110 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2704 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 141 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.48000 REMARK 3 B22 (A**2) : 0.48000 REMARK 3 B33 (A**2) : -0.96000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.173 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.151 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.119 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.017 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2795 ; 0.003 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2604 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3781 ; 1.210 ; 1.640 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6023 ; 1.151 ; 1.579 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 339 ; 6.509 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 145 ;32.563 ;22.690 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 501 ;12.661 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;20.698 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 356 ; 0.049 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3113 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 579 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 668 A 785 REMARK 3 ORIGIN FOR THE GROUP (A): 10.0631 14.3701 -5.1850 REMARK 3 T TENSOR REMARK 3 T11: 0.3532 T22: 0.2702 REMARK 3 T33: 0.0288 T12: -0.0633 REMARK 3 T13: 0.0340 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 2.0788 L22: 2.2740 REMARK 3 L33: 2.0354 L12: -1.2746 REMARK 3 L13: -0.4106 L23: 0.7186 REMARK 3 S TENSOR REMARK 3 S11: 0.0537 S12: -0.0318 S13: 0.1857 REMARK 3 S21: 0.1120 S22: 0.0686 S23: -0.1955 REMARK 3 S31: -0.2769 S32: 0.2297 S33: -0.1223 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 786 A 839 REMARK 3 ORIGIN FOR THE GROUP (A): 13.8875 -2.8824 -5.5251 REMARK 3 T TENSOR REMARK 3 T11: 0.2330 T22: 0.2507 REMARK 3 T33: 0.0315 T12: -0.0148 REMARK 3 T13: -0.0320 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 4.0750 L22: 2.4442 REMARK 3 L33: 3.2471 L12: 0.2813 REMARK 3 L13: -0.4895 L23: -0.8417 REMARK 3 S TENSOR REMARK 3 S11: 0.1437 S12: -0.0381 S13: -0.2343 REMARK 3 S21: 0.1460 S22: -0.0885 S23: 0.1574 REMARK 3 S31: -0.0201 S32: -0.1530 S33: -0.0552 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 840 A 849 REMARK 3 ORIGIN FOR THE GROUP (A): 34.0774 3.7095 -5.6741 REMARK 3 T TENSOR REMARK 3 T11: 0.4360 T22: 0.5809 REMARK 3 T33: 0.3079 T12: -0.1930 REMARK 3 T13: 0.0349 T23: -0.1239 REMARK 3 L TENSOR REMARK 3 L11: 13.7579 L22: 2.5977 REMARK 3 L33: 14.0324 L12: -5.3864 REMARK 3 L13: 6.8757 L23: -4.9289 REMARK 3 S TENSOR REMARK 3 S11: 0.8326 S12: 1.3339 S13: 0.9654 REMARK 3 S21: -0.2255 S22: -0.7685 S23: -0.3182 REMARK 3 S31: -0.1207 S32: 2.0978 S33: -0.0642 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 850 A 938 REMARK 3 ORIGIN FOR THE GROUP (A): 32.1207 -6.9936 6.2356 REMARK 3 T TENSOR REMARK 3 T11: 0.2440 T22: 0.2356 REMARK 3 T33: 0.0420 T12: -0.0299 REMARK 3 T13: -0.0505 T23: 0.0285 REMARK 3 L TENSOR REMARK 3 L11: 4.4036 L22: 1.2284 REMARK 3 L33: 2.0417 L12: 0.0910 REMARK 3 L13: 1.8020 L23: 0.0677 REMARK 3 S TENSOR REMARK 3 S11: 0.0586 S12: -0.1305 S13: -0.3036 REMARK 3 S21: 0.1042 S22: 0.0121 S23: -0.1306 REMARK 3 S31: 0.0611 S32: 0.3004 S33: -0.0707 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 939 A 1000 REMARK 3 ORIGIN FOR THE GROUP (A): 22.0735 -16.5644 5.1221 REMARK 3 T TENSOR REMARK 3 T11: 0.2354 T22: 0.1064 REMARK 3 T33: 0.3100 T12: -0.0592 REMARK 3 T13: -0.0713 T23: 0.0941 REMARK 3 L TENSOR REMARK 3 L11: 4.1918 L22: 1.6766 REMARK 3 L33: 2.3596 L12: 0.7678 REMARK 3 L13: 1.8688 L23: 0.5859 REMARK 3 S TENSOR REMARK 3 S11: 0.4032 S12: -0.4125 S13: -1.0252 REMARK 3 S21: 0.0992 S22: -0.1052 S23: 0.0907 REMARK 3 S31: 0.4986 S32: -0.2022 S33: -0.2980 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1001 A 1005 REMARK 3 ORIGIN FOR THE GROUP (A): 10.7792 -19.8254 -6.1007 REMARK 3 T TENSOR REMARK 3 T11: 0.3639 T22: 0.2320 REMARK 3 T33: 0.3266 T12: -0.1797 REMARK 3 T13: -0.2081 T23: -0.0652 REMARK 3 L TENSOR REMARK 3 L11: 16.8496 L22: 5.2986 REMARK 3 L33: 21.6158 L12: -7.1070 REMARK 3 L13: 11.1388 L23: 1.0280 REMARK 3 S TENSOR REMARK 3 S11: 0.6915 S12: 0.7537 S13: -1.4100 REMARK 3 S21: -0.0597 S22: -0.8272 S23: 1.0295 REMARK 3 S31: 1.0578 S32: -0.7812 S33: 0.1357 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6PK6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1000242669. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28701 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 104.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.70 REMARK 200 R MERGE (I) : 0.13600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.70 REMARK 200 R MERGE FOR SHELL (I) : 1.78200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 4IJP REMARK 200 REMARK 200 REMARK: ROD REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CAPSO PH 9.5, 20% PEG 8,000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.26650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.13325 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 78.39975 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 655 REMARK 465 MET A 656 REMARK 465 ASP A 657 REMARK 465 PHE A 658 REMARK 465 LYS A 659 REMARK 465 GLU A 660 REMARK 465 ASN A 661 REMARK 465 PRO A 662 REMARK 465 ASN A 663 REMARK 465 LEU A 664 REMARK 465 ARG A 665 REMARK 465 ASP A 666 REMARK 465 ASN A 667 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 676 NE CZ NH1 NH2 REMARK 470 GLU A 734 CG CD OE1 OE2 REMARK 470 TYR A 781 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 783 CG CD CE NZ REMARK 470 ASP A 784 CG OD1 OD2 REMARK 470 LYS A 790 CG CD CE NZ REMARK 470 LYS A 827 NZ REMARK 470 ASP A 845 CG OD1 OD2 REMARK 470 LYS A 886 CE NZ REMARK 470 LYS A 892 NZ REMARK 470 LYS A 911 CG CD CE NZ REMARK 470 LYS A 919 NZ REMARK 470 ILE A 932 CD1 REMARK 470 LYS A 936 CD CE NZ REMARK 470 GLU A 939 CG CD OE1 OE2 REMARK 470 CYS A 962 SG REMARK 470 ARG A 964 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 971 CG CD CE NZ REMARK 470 LYS A 990 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 686 -27.30 -155.74 REMARK 500 LYS A 783 -85.58 -125.72 REMARK 500 ASP A 784 41.74 -92.61 REMARK 500 VAL A 785 -69.87 -101.35 REMARK 500 ASP A 815 44.40 -159.84 REMARK 500 ASP A 834 90.15 58.69 REMARK 500 VAL A 851 140.80 78.75 REMARK 500 ASP A 867 -145.64 -155.94 REMARK 500 VAL A 937 -70.48 -65.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OND A 1102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6PJJ RELATED DB: PDB REMARK 900 6PJJ CONTAINS THE SAME ENZYME COMPLEXED WITH BENZOTHIOHENE SERIES REMARK 900 224 DBREF 6PK6 A 657 1005 UNP Q13523 PRP4B_HUMAN 657 1005 SEQADV 6PK6 SER A 655 UNP Q13523 EXPRESSION TAG SEQADV 6PK6 MET A 656 UNP Q13523 EXPRESSION TAG SEQRES 1 A 351 SER MET ASP PHE LYS GLU ASN PRO ASN LEU ARG ASP ASN SEQRES 2 A 351 TRP THR ASP ALA GLU GLY TYR TYR ARG VAL ASN ILE GLY SEQRES 3 A 351 GLU VAL LEU ASP LYS ARG TYR ASN VAL TYR GLY TYR THR SEQRES 4 A 351 GLY GLN GLY VAL PHE SER ASN VAL VAL ARG ALA ARG ASP SEQRES 5 A 351 ASN ALA ARG ALA ASN GLN GLU VAL ALA VAL LYS ILE ILE SEQRES 6 A 351 ARG ASN ASN GLU LEU MET GLN LYS THR GLY LEU LYS GLU SEQRES 7 A 351 LEU GLU PHE LEU LYS LYS LEU ASN ASP ALA ASP PRO ASP SEQRES 8 A 351 ASP LYS PHE HIS CYS LEU ARG LEU PHE ARG HIS PHE TYR SEQRES 9 A 351 HIS LYS GLN HIS LEU CYS LEU VAL PHE GLU PRO LEU SER SEQRES 10 A 351 MET ASN LEU ARG GLU VAL LEU LYS LYS TYR GLY LYS ASP SEQRES 11 A 351 VAL GLY LEU HIS ILE LYS ALA VAL ARG SER TYR SER GLN SEQRES 12 A 351 GLN LEU PHE LEU ALA LEU LYS LEU LEU LYS ARG CYS ASN SEQRES 13 A 351 ILE LEU HIS ALA ASP ILE LYS PRO ASP ASN ILE LEU VAL SEQRES 14 A 351 ASN GLU SER LYS THR ILE LEU LYS LEU CYS ASP PHE GLY SEQRES 15 A 351 SER ALA SER HIS VAL ALA ASP ASN ASP ILE THR PRO PTR SEQRES 16 A 351 LEU VAL SER ARG PHE TYR ARG ALA PRO GLU ILE ILE ILE SEQRES 17 A 351 GLY LYS SER TYR ASP TYR GLY ILE ASP MET TRP SER VAL SEQRES 18 A 351 GLY CYS THR LEU TYR GLU LEU TYR THR GLY LYS ILE LEU SEQRES 19 A 351 PHE PRO GLY LYS THR ASN ASN HIS MET LEU LYS LEU ALA SEQRES 20 A 351 MET ASP LEU LYS GLY LYS MET PRO ASN LYS MET ILE ARG SEQRES 21 A 351 LYS GLY VAL PHE LYS ASP GLN HIS PHE ASP GLN ASN LEU SEQRES 22 A 351 ASN PHE MET TYR ILE GLU VAL ASP LYS VAL THR GLU ARG SEQRES 23 A 351 GLU LYS VAL THR VAL MET SER THR ILE ASN PRO THR LYS SEQRES 24 A 351 ASP LEU LEU ALA ASP LEU ILE GLY CYS GLN ARG LEU PRO SEQRES 25 A 351 GLU ASP GLN ARG LYS LYS VAL HIS GLN LEU LYS ASP LEU SEQRES 26 A 351 LEU ASP GLN ILE LEU MET LEU ASP PRO ALA LYS ARG ILE SEQRES 27 A 351 SER ILE ASN GLN ALA LEU GLN HIS ALA PHE ILE GLN GLU MODRES 6PK6 PTR A 849 TYR MODIFIED RESIDUE HET PTR A 849 16 HET SO4 A1101 5 HET OND A1102 28 HETNAM PTR O-PHOSPHOTYROSINE HETNAM SO4 SULFATE ION HETNAM OND 4-(5-{[(2-AMINOPHENYL)METHYL]CARBAMOYL}THIOPHEN-2-YL)- HETNAM 2 OND 1-BENZOTHIOPHENE-2-CARBOXAMIDE HETSYN PTR PHOSPHONOTYROSINE FORMUL 1 PTR C9 H12 N O6 P FORMUL 2 SO4 O4 S 2- FORMUL 3 OND C21 H17 N3 O2 S2 FORMUL 4 HOH *141(H2 O) HELIX 1 AA1 ASN A 722 ASP A 743 1 22 HELIX 2 AA2 LEU A 774 TYR A 781 1 8 HELIX 3 AA3 HIS A 788 CYS A 809 1 22 HELIX 4 AA4 LYS A 817 ASP A 819 5 3 HELIX 5 AA5 SER A 852 ARG A 856 5 5 HELIX 6 AA6 ALA A 857 GLY A 863 1 7 HELIX 7 AA7 TYR A 868 GLY A 885 1 18 HELIX 8 AA8 THR A 893 GLY A 906 1 14 HELIX 9 AA9 PRO A 909 GLY A 916 1 8 HELIX 10 AB1 PHE A 918 HIS A 922 5 5 HELIX 11 AB2 ASP A 954 ILE A 960 1 7 HELIX 12 AB3 PRO A 966 LEU A 984 1 19 HELIX 13 AB4 ASP A 987 ARG A 991 5 5 HELIX 14 AB5 SER A 993 GLN A 999 1 7 HELIX 15 AB6 HIS A 1000 GLU A 1005 1 6 SHEET 1 AA1 6 VAL A 682 LEU A 683 0 SHEET 2 AA1 6 TYR A 687 GLN A 695 -1 O TYR A 687 N LEU A 683 SHEET 3 AA1 6 SER A 699 ASP A 706 -1 O VAL A 701 N GLY A 694 SHEET 4 AA1 6 GLU A 713 ILE A 719 -1 O ILE A 718 N ASN A 700 SHEET 5 AA1 6 HIS A 762 PHE A 767 -1 O PHE A 767 N ALA A 715 SHEET 6 AA1 6 LEU A 753 HIS A 759 -1 N PHE A 754 O VAL A 766 SHEET 1 AA2 3 MET A 772 ASN A 773 0 SHEET 2 AA2 3 ILE A 821 VAL A 823 -1 O VAL A 823 N MET A 772 SHEET 3 AA2 3 LEU A 830 LEU A 832 -1 O LYS A 831 N LEU A 822 SHEET 1 AA3 2 ILE A 811 LEU A 812 0 SHEET 2 AA3 2 SER A 839 HIS A 840 -1 O SER A 839 N LEU A 812 SHEET 1 AA4 2 PHE A 929 VAL A 934 0 SHEET 2 AA4 2 GLU A 941 MET A 946 -1 O MET A 946 N PHE A 929 LINK C PRO A 848 N PTR A 849 1555 1555 1.34 LINK C PTR A 849 N LEU A 850 1555 1555 1.34 SITE 1 AC1 3 ARG A 853 ARG A 856 HOH A1233 SITE 1 AC2 15 GLN A 695 ALA A 715 LYS A 717 GLU A 732 SITE 2 AC2 15 LYS A 747 PHE A 748 LEU A 770 SER A 771 SITE 3 AC2 15 ASN A 773 GLU A 776 LEU A 801 LEU A 822 SITE 4 AC2 15 ASP A 834 HOH A1201 HOH A1203 CRYST1 69.132 69.132 104.533 90.00 90.00 90.00 P 41 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014465 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014465 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009566 0.00000