HEADER TRANSFERASE/TRANSFERASE INHIBITOR 28-JUN-19 6PK6
TITLE HUMAN PRPF4B BOUND TO BENZOTHIOPHENE INHIBITOR 329
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PRP4 HOMOLOG;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: PRP4 KINASE,PRP4 PRE-MRNA-PROCESSING FACTOR 4 HOMOLOG;
COMPND 5 EC: 2.7.11.1;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: PRPF4B, KIAA0536, PRP4, PRP4H, PRP4K;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS SERINE/THREONINE-PROTEIN KINASE PRP4 HOMOLOG, STRUCTURAL GENOMICS
KEYWDS 2 CONSORTIUM, SGC, TRANSFERASE, SPLICING KINASE PRPF4B, TRANSFERASE-
KEYWDS 3 TRANSFERASE INHIBITOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR P.H.C.GODOI,A.S.SANTIAGO,A.M.FALA,P.Z.RAMOS,D.SRIRANGANADANE,
AUTHOR 2 A.MASCARELLO,N.SEGRETTI,H.AZEVEDO,C.R.W.GUIMARAES,P.ARRUDA,
AUTHOR 3 J.M.ELKINS,R.M.COUNAGO,STRUCTURAL GENOMICS CONSORTIUM (SGC)
REVDAT 5 06-NOV-24 6PK6 1 REMARK
REVDAT 4 15-NOV-23 6PK6 1 REMARK
REVDAT 3 11-OCT-23 6PK6 1 REMARK
REVDAT 2 01-JAN-20 6PK6 1 REMARK
REVDAT 1 28-AUG-19 6PK6 0
JRNL AUTH P.H.C.GODOI,A.S.SANTIAGO,A.M.FALA,P.Z.RAMOS,
JRNL AUTH 2 D.SRIRANGANADANE,A.MASCARELLO,N.SEGRETTI,H.AZEVEDO,
JRNL AUTH 3 C.R.W.GUIMARAES,P.ARRUDA,J.M.ELKINS,R.M.COUNAGO
JRNL TITL TO BE PUBLISHED
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. 2.10 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.8.0238
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.13
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 3 NUMBER OF REFLECTIONS : 27219
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.190
REMARK 3 R VALUE (WORKING SET) : 0.189
REMARK 3 FREE R VALUE : 0.217
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 1442
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16
REMARK 3 REFLECTION IN BIN (WORKING SET) : 1994
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95
REMARK 3 BIN R VALUE (WORKING SET) : 0.2780
REMARK 3 BIN FREE R VALUE SET COUNT : 110
REMARK 3 BIN FREE R VALUE : 0.3170
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2704
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 33
REMARK 3 SOLVENT ATOMS : 141
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.55
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.48000
REMARK 3 B22 (A**2) : 0.48000
REMARK 3 B33 (A**2) : -0.96000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.173
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.151
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.119
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.017
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2795 ; 0.003 ; 0.013
REMARK 3 BOND LENGTHS OTHERS (A): 2604 ; 0.001 ; 0.017
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3781 ; 1.210 ; 1.640
REMARK 3 BOND ANGLES OTHERS (DEGREES): 6023 ; 1.151 ; 1.579
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 339 ; 6.509 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 145 ;32.563 ;22.690
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 501 ;12.661 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;20.698 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 356 ; 0.049 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3113 ; 0.004 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): 579 ; 0.001 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 6
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 668 A 785
REMARK 3 ORIGIN FOR THE GROUP (A): 10.0631 14.3701 -5.1850
REMARK 3 T TENSOR
REMARK 3 T11: 0.3532 T22: 0.2702
REMARK 3 T33: 0.0288 T12: -0.0633
REMARK 3 T13: 0.0340 T23: 0.0123
REMARK 3 L TENSOR
REMARK 3 L11: 2.0788 L22: 2.2740
REMARK 3 L33: 2.0354 L12: -1.2746
REMARK 3 L13: -0.4106 L23: 0.7186
REMARK 3 S TENSOR
REMARK 3 S11: 0.0537 S12: -0.0318 S13: 0.1857
REMARK 3 S21: 0.1120 S22: 0.0686 S23: -0.1955
REMARK 3 S31: -0.2769 S32: 0.2297 S33: -0.1223
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 786 A 839
REMARK 3 ORIGIN FOR THE GROUP (A): 13.8875 -2.8824 -5.5251
REMARK 3 T TENSOR
REMARK 3 T11: 0.2330 T22: 0.2507
REMARK 3 T33: 0.0315 T12: -0.0148
REMARK 3 T13: -0.0320 T23: -0.0107
REMARK 3 L TENSOR
REMARK 3 L11: 4.0750 L22: 2.4442
REMARK 3 L33: 3.2471 L12: 0.2813
REMARK 3 L13: -0.4895 L23: -0.8417
REMARK 3 S TENSOR
REMARK 3 S11: 0.1437 S12: -0.0381 S13: -0.2343
REMARK 3 S21: 0.1460 S22: -0.0885 S23: 0.1574
REMARK 3 S31: -0.0201 S32: -0.1530 S33: -0.0552
REMARK 3
REMARK 3 TLS GROUP : 3
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 840 A 849
REMARK 3 ORIGIN FOR THE GROUP (A): 34.0774 3.7095 -5.6741
REMARK 3 T TENSOR
REMARK 3 T11: 0.4360 T22: 0.5809
REMARK 3 T33: 0.3079 T12: -0.1930
REMARK 3 T13: 0.0349 T23: -0.1239
REMARK 3 L TENSOR
REMARK 3 L11: 13.7579 L22: 2.5977
REMARK 3 L33: 14.0324 L12: -5.3864
REMARK 3 L13: 6.8757 L23: -4.9289
REMARK 3 S TENSOR
REMARK 3 S11: 0.8326 S12: 1.3339 S13: 0.9654
REMARK 3 S21: -0.2255 S22: -0.7685 S23: -0.3182
REMARK 3 S31: -0.1207 S32: 2.0978 S33: -0.0642
REMARK 3
REMARK 3 TLS GROUP : 4
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 850 A 938
REMARK 3 ORIGIN FOR THE GROUP (A): 32.1207 -6.9936 6.2356
REMARK 3 T TENSOR
REMARK 3 T11: 0.2440 T22: 0.2356
REMARK 3 T33: 0.0420 T12: -0.0299
REMARK 3 T13: -0.0505 T23: 0.0285
REMARK 3 L TENSOR
REMARK 3 L11: 4.4036 L22: 1.2284
REMARK 3 L33: 2.0417 L12: 0.0910
REMARK 3 L13: 1.8020 L23: 0.0677
REMARK 3 S TENSOR
REMARK 3 S11: 0.0586 S12: -0.1305 S13: -0.3036
REMARK 3 S21: 0.1042 S22: 0.0121 S23: -0.1306
REMARK 3 S31: 0.0611 S32: 0.3004 S33: -0.0707
REMARK 3
REMARK 3 TLS GROUP : 5
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 939 A 1000
REMARK 3 ORIGIN FOR THE GROUP (A): 22.0735 -16.5644 5.1221
REMARK 3 T TENSOR
REMARK 3 T11: 0.2354 T22: 0.1064
REMARK 3 T33: 0.3100 T12: -0.0592
REMARK 3 T13: -0.0713 T23: 0.0941
REMARK 3 L TENSOR
REMARK 3 L11: 4.1918 L22: 1.6766
REMARK 3 L33: 2.3596 L12: 0.7678
REMARK 3 L13: 1.8688 L23: 0.5859
REMARK 3 S TENSOR
REMARK 3 S11: 0.4032 S12: -0.4125 S13: -1.0252
REMARK 3 S21: 0.0992 S22: -0.1052 S23: 0.0907
REMARK 3 S31: 0.4986 S32: -0.2022 S33: -0.2980
REMARK 3
REMARK 3 TLS GROUP : 6
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 1001 A 1005
REMARK 3 ORIGIN FOR THE GROUP (A): 10.7792 -19.8254 -6.1007
REMARK 3 T TENSOR
REMARK 3 T11: 0.3639 T22: 0.2320
REMARK 3 T33: 0.3266 T12: -0.1797
REMARK 3 T13: -0.2081 T23: -0.0652
REMARK 3 L TENSOR
REMARK 3 L11: 16.8496 L22: 5.2986
REMARK 3 L33: 21.6158 L12: -7.1070
REMARK 3 L13: 11.1388 L23: 1.0280
REMARK 3 S TENSOR
REMARK 3 S11: 0.6915 S12: 0.7537 S13: -1.4100
REMARK 3 S21: -0.0597 S22: -0.8272 S23: 1.0295
REMARK 3 S31: 1.0578 S32: -0.7812 S33: 0.1357
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS U VALUES : WITH TLS ADDED
REMARK 4
REMARK 4 6PK6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUL-19.
REMARK 100 THE DEPOSITION ID IS D_1000242669.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 23-JUN-18
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I24
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.1
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28701
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100
REMARK 200 RESOLUTION RANGE LOW (A) : 104.530
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 13.70
REMARK 200 R MERGE (I) : 0.13600
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.1000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : 13.70
REMARK 200 R MERGE FOR SHELL (I) : 1.78200
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER 2.8.2
REMARK 200 STARTING MODEL: 4IJP
REMARK 200
REMARK 200 REMARK: ROD
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 61.63
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CAPSO PH 9.5, 20% PEG 8,000,
REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -Y,X,Z+1/4
REMARK 290 4555 Y,-X,Z+3/4
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.26650
REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.13325
REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 78.39975
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 SER A 655
REMARK 465 MET A 656
REMARK 465 ASP A 657
REMARK 465 PHE A 658
REMARK 465 LYS A 659
REMARK 465 GLU A 660
REMARK 465 ASN A 661
REMARK 465 PRO A 662
REMARK 465 ASN A 663
REMARK 465 LEU A 664
REMARK 465 ARG A 665
REMARK 465 ASP A 666
REMARK 465 ASN A 667
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 ARG A 676 NE CZ NH1 NH2
REMARK 470 GLU A 734 CG CD OE1 OE2
REMARK 470 TYR A 781 CG CD1 CD2 CE1 CE2 CZ OH
REMARK 470 LYS A 783 CG CD CE NZ
REMARK 470 ASP A 784 CG OD1 OD2
REMARK 470 LYS A 790 CG CD CE NZ
REMARK 470 LYS A 827 NZ
REMARK 470 ASP A 845 CG OD1 OD2
REMARK 470 LYS A 886 CE NZ
REMARK 470 LYS A 892 NZ
REMARK 470 LYS A 911 CG CD CE NZ
REMARK 470 LYS A 919 NZ
REMARK 470 ILE A 932 CD1
REMARK 470 LYS A 936 CD CE NZ
REMARK 470 GLU A 939 CG CD OE1 OE2
REMARK 470 CYS A 962 SG
REMARK 470 ARG A 964 CG CD NE CZ NH1 NH2
REMARK 470 LYS A 971 CG CD CE NZ
REMARK 470 LYS A 990 CD CE NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ARG A 686 -27.30 -155.74
REMARK 500 LYS A 783 -85.58 -125.72
REMARK 500 ASP A 784 41.74 -92.61
REMARK 500 VAL A 785 -69.87 -101.35
REMARK 500 ASP A 815 44.40 -159.84
REMARK 500 ASP A 834 90.15 58.69
REMARK 500 VAL A 851 140.80 78.75
REMARK 500 ASP A 867 -145.64 -155.94
REMARK 500 VAL A 937 -70.48 -65.90
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1101
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OND A 1102
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 6PJJ RELATED DB: PDB
REMARK 900 6PJJ CONTAINS THE SAME ENZYME COMPLEXED WITH BENZOTHIOHENE SERIES
REMARK 900 224
DBREF 6PK6 A 657 1005 UNP Q13523 PRP4B_HUMAN 657 1005
SEQADV 6PK6 SER A 655 UNP Q13523 EXPRESSION TAG
SEQADV 6PK6 MET A 656 UNP Q13523 EXPRESSION TAG
SEQRES 1 A 351 SER MET ASP PHE LYS GLU ASN PRO ASN LEU ARG ASP ASN
SEQRES 2 A 351 TRP THR ASP ALA GLU GLY TYR TYR ARG VAL ASN ILE GLY
SEQRES 3 A 351 GLU VAL LEU ASP LYS ARG TYR ASN VAL TYR GLY TYR THR
SEQRES 4 A 351 GLY GLN GLY VAL PHE SER ASN VAL VAL ARG ALA ARG ASP
SEQRES 5 A 351 ASN ALA ARG ALA ASN GLN GLU VAL ALA VAL LYS ILE ILE
SEQRES 6 A 351 ARG ASN ASN GLU LEU MET GLN LYS THR GLY LEU LYS GLU
SEQRES 7 A 351 LEU GLU PHE LEU LYS LYS LEU ASN ASP ALA ASP PRO ASP
SEQRES 8 A 351 ASP LYS PHE HIS CYS LEU ARG LEU PHE ARG HIS PHE TYR
SEQRES 9 A 351 HIS LYS GLN HIS LEU CYS LEU VAL PHE GLU PRO LEU SER
SEQRES 10 A 351 MET ASN LEU ARG GLU VAL LEU LYS LYS TYR GLY LYS ASP
SEQRES 11 A 351 VAL GLY LEU HIS ILE LYS ALA VAL ARG SER TYR SER GLN
SEQRES 12 A 351 GLN LEU PHE LEU ALA LEU LYS LEU LEU LYS ARG CYS ASN
SEQRES 13 A 351 ILE LEU HIS ALA ASP ILE LYS PRO ASP ASN ILE LEU VAL
SEQRES 14 A 351 ASN GLU SER LYS THR ILE LEU LYS LEU CYS ASP PHE GLY
SEQRES 15 A 351 SER ALA SER HIS VAL ALA ASP ASN ASP ILE THR PRO PTR
SEQRES 16 A 351 LEU VAL SER ARG PHE TYR ARG ALA PRO GLU ILE ILE ILE
SEQRES 17 A 351 GLY LYS SER TYR ASP TYR GLY ILE ASP MET TRP SER VAL
SEQRES 18 A 351 GLY CYS THR LEU TYR GLU LEU TYR THR GLY LYS ILE LEU
SEQRES 19 A 351 PHE PRO GLY LYS THR ASN ASN HIS MET LEU LYS LEU ALA
SEQRES 20 A 351 MET ASP LEU LYS GLY LYS MET PRO ASN LYS MET ILE ARG
SEQRES 21 A 351 LYS GLY VAL PHE LYS ASP GLN HIS PHE ASP GLN ASN LEU
SEQRES 22 A 351 ASN PHE MET TYR ILE GLU VAL ASP LYS VAL THR GLU ARG
SEQRES 23 A 351 GLU LYS VAL THR VAL MET SER THR ILE ASN PRO THR LYS
SEQRES 24 A 351 ASP LEU LEU ALA ASP LEU ILE GLY CYS GLN ARG LEU PRO
SEQRES 25 A 351 GLU ASP GLN ARG LYS LYS VAL HIS GLN LEU LYS ASP LEU
SEQRES 26 A 351 LEU ASP GLN ILE LEU MET LEU ASP PRO ALA LYS ARG ILE
SEQRES 27 A 351 SER ILE ASN GLN ALA LEU GLN HIS ALA PHE ILE GLN GLU
MODRES 6PK6 PTR A 849 TYR MODIFIED RESIDUE
HET PTR A 849 16
HET SO4 A1101 5
HET OND A1102 28
HETNAM PTR O-PHOSPHOTYROSINE
HETNAM SO4 SULFATE ION
HETNAM OND 4-(5-{[(2-AMINOPHENYL)METHYL]CARBAMOYL}THIOPHEN-2-YL)-
HETNAM 2 OND 1-BENZOTHIOPHENE-2-CARBOXAMIDE
HETSYN PTR PHOSPHONOTYROSINE
FORMUL 1 PTR C9 H12 N O6 P
FORMUL 2 SO4 O4 S 2-
FORMUL 3 OND C21 H17 N3 O2 S2
FORMUL 4 HOH *141(H2 O)
HELIX 1 AA1 ASN A 722 ASP A 743 1 22
HELIX 2 AA2 LEU A 774 TYR A 781 1 8
HELIX 3 AA3 HIS A 788 CYS A 809 1 22
HELIX 4 AA4 LYS A 817 ASP A 819 5 3
HELIX 5 AA5 SER A 852 ARG A 856 5 5
HELIX 6 AA6 ALA A 857 GLY A 863 1 7
HELIX 7 AA7 TYR A 868 GLY A 885 1 18
HELIX 8 AA8 THR A 893 GLY A 906 1 14
HELIX 9 AA9 PRO A 909 GLY A 916 1 8
HELIX 10 AB1 PHE A 918 HIS A 922 5 5
HELIX 11 AB2 ASP A 954 ILE A 960 1 7
HELIX 12 AB3 PRO A 966 LEU A 984 1 19
HELIX 13 AB4 ASP A 987 ARG A 991 5 5
HELIX 14 AB5 SER A 993 GLN A 999 1 7
HELIX 15 AB6 HIS A 1000 GLU A 1005 1 6
SHEET 1 AA1 6 VAL A 682 LEU A 683 0
SHEET 2 AA1 6 TYR A 687 GLN A 695 -1 O TYR A 687 N LEU A 683
SHEET 3 AA1 6 SER A 699 ASP A 706 -1 O VAL A 701 N GLY A 694
SHEET 4 AA1 6 GLU A 713 ILE A 719 -1 O ILE A 718 N ASN A 700
SHEET 5 AA1 6 HIS A 762 PHE A 767 -1 O PHE A 767 N ALA A 715
SHEET 6 AA1 6 LEU A 753 HIS A 759 -1 N PHE A 754 O VAL A 766
SHEET 1 AA2 3 MET A 772 ASN A 773 0
SHEET 2 AA2 3 ILE A 821 VAL A 823 -1 O VAL A 823 N MET A 772
SHEET 3 AA2 3 LEU A 830 LEU A 832 -1 O LYS A 831 N LEU A 822
SHEET 1 AA3 2 ILE A 811 LEU A 812 0
SHEET 2 AA3 2 SER A 839 HIS A 840 -1 O SER A 839 N LEU A 812
SHEET 1 AA4 2 PHE A 929 VAL A 934 0
SHEET 2 AA4 2 GLU A 941 MET A 946 -1 O MET A 946 N PHE A 929
LINK C PRO A 848 N PTR A 849 1555 1555 1.34
LINK C PTR A 849 N LEU A 850 1555 1555 1.34
SITE 1 AC1 3 ARG A 853 ARG A 856 HOH A1233
SITE 1 AC2 15 GLN A 695 ALA A 715 LYS A 717 GLU A 732
SITE 2 AC2 15 LYS A 747 PHE A 748 LEU A 770 SER A 771
SITE 3 AC2 15 ASN A 773 GLU A 776 LEU A 801 LEU A 822
SITE 4 AC2 15 ASP A 834 HOH A1201 HOH A1203
CRYST1 69.132 69.132 104.533 90.00 90.00 90.00 P 41 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.014465 0.000000 0.000000 0.00000
SCALE2 0.000000 0.014465 0.000000 0.00000
SCALE3 0.000000 0.000000 0.009566 0.00000