data_6PKK # _entry.id 6PKK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.320 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6PKK WWPDB D_1000242605 EMDB EMD-20357 # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type EMDB 'MicroED structure of proteinase K from an uncoated, single lamella at 2.18A resolution (#5)' EMD-20357 'associated EM volume' EMDB . EMD-20356 'other EM volume' EMDB . EMD-20358 'other EM volume' EMDB . EMD-20359 'other EM volume' EMDB . EMD-20360 'other EM volume' EMDB . EMD-20361 'other EM volume' EMDB . EMD-20362 'other EM volume' EMDB . EMD-20363 'other EM volume' EMDB . EMD-20364 'other EM volume' EMDB . EMD-20365 'other EM volume' EMDB . EMD-20366 'other EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6PKK _pdbx_database_status.recvd_initial_deposition_date 2019-06-29 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Martynowycz, M.W.' 1 0000-0003-0055-230X 'Zhao, W.' 2 0000-0002-4441-9722 'Hattne, J.' 3 0000-0002-8936-0912 'Jensen, G.J.' 4 0000-0003-1556-4864 'Gonen, T.' 5 0000-0002-9254-4069 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Structure _citation.journal_id_ASTM STRUE6 _citation.journal_id_CSD 2005 _citation.journal_id_ISSN 0969-2126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 27 _citation.language ? _citation.page_first 1594 _citation.page_last ? _citation.title 'Qualitative Analyses of Polishing and Precoating FIB Milled Crystals for MicroED.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.str.2019.07.004 _citation.pdbx_database_id_PubMed 31422911 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Martynowycz, M.W.' 1 ? primary 'Zhao, W.' 2 ? primary 'Hattne, J.' 3 ? primary 'Jensen, G.J.' 4 ? primary 'Gonen, T.' 5 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6PKK _cell.details ? _cell.formula_units_Z ? _cell.length_a 67.570 _cell.length_a_esd ? _cell.length_b 67.570 _cell.length_b_esd ? _cell.length_c 105.720 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PKK _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Proteinase K' 28930.783 1 3.4.21.64 ? 'UNP residues 106-384' ? 2 water nat water 18.015 59 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Endopeptidase K, Tritirachium alkaline proteinase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;AAQTNAPWGLARISSTSPGTSTYYYDESAGQGSCVYVIDTGIEASHPEFEGRAQMVKTYYYSSRDGNGHGTHCAGTVGSR TYGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGGYSSSVNSAAARLQSSGVMVAVAAG NNNADARNYSPASEPSVCTVGASDRYDRRSSFSNYGSVLDIFGPGTSILSTWIGGSTRSISGTSMATPHVAGLAAYLMTL GKTTAASACRYIADTANKGDLSNIPFGTVNLLAYNNYQA ; _entity_poly.pdbx_seq_one_letter_code_can ;AAQTNAPWGLARISSTSPGTSTYYYDESAGQGSCVYVIDTGIEASHPEFEGRAQMVKTYYYSSRDGNGHGTHCAGTVGSR TYGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGGYSSSVNSAAARLQSSGVMVAVAAG NNNADARNYSPASEPSVCTVGASDRYDRRSSFSNYGSVLDIFGPGTSILSTWIGGSTRSISGTSMATPHVAGLAAYLMTL GKTTAASACRYIADTANKGDLSNIPFGTVNLLAYNNYQA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ALA n 1 3 GLN n 1 4 THR n 1 5 ASN n 1 6 ALA n 1 7 PRO n 1 8 TRP n 1 9 GLY n 1 10 LEU n 1 11 ALA n 1 12 ARG n 1 13 ILE n 1 14 SER n 1 15 SER n 1 16 THR n 1 17 SER n 1 18 PRO n 1 19 GLY n 1 20 THR n 1 21 SER n 1 22 THR n 1 23 TYR n 1 24 TYR n 1 25 TYR n 1 26 ASP n 1 27 GLU n 1 28 SER n 1 29 ALA n 1 30 GLY n 1 31 GLN n 1 32 GLY n 1 33 SER n 1 34 CYS n 1 35 VAL n 1 36 TYR n 1 37 VAL n 1 38 ILE n 1 39 ASP n 1 40 THR n 1 41 GLY n 1 42 ILE n 1 43 GLU n 1 44 ALA n 1 45 SER n 1 46 HIS n 1 47 PRO n 1 48 GLU n 1 49 PHE n 1 50 GLU n 1 51 GLY n 1 52 ARG n 1 53 ALA n 1 54 GLN n 1 55 MET n 1 56 VAL n 1 57 LYS n 1 58 THR n 1 59 TYR n 1 60 TYR n 1 61 TYR n 1 62 SER n 1 63 SER n 1 64 ARG n 1 65 ASP n 1 66 GLY n 1 67 ASN n 1 68 GLY n 1 69 HIS n 1 70 GLY n 1 71 THR n 1 72 HIS n 1 73 CYS n 1 74 ALA n 1 75 GLY n 1 76 THR n 1 77 VAL n 1 78 GLY n 1 79 SER n 1 80 ARG n 1 81 THR n 1 82 TYR n 1 83 GLY n 1 84 VAL n 1 85 ALA n 1 86 LYS n 1 87 LYS n 1 88 THR n 1 89 GLN n 1 90 LEU n 1 91 PHE n 1 92 GLY n 1 93 VAL n 1 94 LYS n 1 95 VAL n 1 96 LEU n 1 97 ASP n 1 98 ASP n 1 99 ASN n 1 100 GLY n 1 101 SER n 1 102 GLY n 1 103 GLN n 1 104 TYR n 1 105 SER n 1 106 THR n 1 107 ILE n 1 108 ILE n 1 109 ALA n 1 110 GLY n 1 111 MET n 1 112 ASP n 1 113 PHE n 1 114 VAL n 1 115 ALA n 1 116 SER n 1 117 ASP n 1 118 LYS n 1 119 ASN n 1 120 ASN n 1 121 ARG n 1 122 ASN n 1 123 CYS n 1 124 PRO n 1 125 LYS n 1 126 GLY n 1 127 VAL n 1 128 VAL n 1 129 ALA n 1 130 SER n 1 131 LEU n 1 132 SER n 1 133 LEU n 1 134 GLY n 1 135 GLY n 1 136 GLY n 1 137 TYR n 1 138 SER n 1 139 SER n 1 140 SER n 1 141 VAL n 1 142 ASN n 1 143 SER n 1 144 ALA n 1 145 ALA n 1 146 ALA n 1 147 ARG n 1 148 LEU n 1 149 GLN n 1 150 SER n 1 151 SER n 1 152 GLY n 1 153 VAL n 1 154 MET n 1 155 VAL n 1 156 ALA n 1 157 VAL n 1 158 ALA n 1 159 ALA n 1 160 GLY n 1 161 ASN n 1 162 ASN n 1 163 ASN n 1 164 ALA n 1 165 ASP n 1 166 ALA n 1 167 ARG n 1 168 ASN n 1 169 TYR n 1 170 SER n 1 171 PRO n 1 172 ALA n 1 173 SER n 1 174 GLU n 1 175 PRO n 1 176 SER n 1 177 VAL n 1 178 CYS n 1 179 THR n 1 180 VAL n 1 181 GLY n 1 182 ALA n 1 183 SER n 1 184 ASP n 1 185 ARG n 1 186 TYR n 1 187 ASP n 1 188 ARG n 1 189 ARG n 1 190 SER n 1 191 SER n 1 192 PHE n 1 193 SER n 1 194 ASN n 1 195 TYR n 1 196 GLY n 1 197 SER n 1 198 VAL n 1 199 LEU n 1 200 ASP n 1 201 ILE n 1 202 PHE n 1 203 GLY n 1 204 PRO n 1 205 GLY n 1 206 THR n 1 207 SER n 1 208 ILE n 1 209 LEU n 1 210 SER n 1 211 THR n 1 212 TRP n 1 213 ILE n 1 214 GLY n 1 215 GLY n 1 216 SER n 1 217 THR n 1 218 ARG n 1 219 SER n 1 220 ILE n 1 221 SER n 1 222 GLY n 1 223 THR n 1 224 SER n 1 225 MET n 1 226 ALA n 1 227 THR n 1 228 PRO n 1 229 HIS n 1 230 VAL n 1 231 ALA n 1 232 GLY n 1 233 LEU n 1 234 ALA n 1 235 ALA n 1 236 TYR n 1 237 LEU n 1 238 MET n 1 239 THR n 1 240 LEU n 1 241 GLY n 1 242 LYS n 1 243 THR n 1 244 THR n 1 245 ALA n 1 246 ALA n 1 247 SER n 1 248 ALA n 1 249 CYS n 1 250 ARG n 1 251 TYR n 1 252 ILE n 1 253 ALA n 1 254 ASP n 1 255 THR n 1 256 ALA n 1 257 ASN n 1 258 LYS n 1 259 GLY n 1 260 ASP n 1 261 LEU n 1 262 SER n 1 263 ASN n 1 264 ILE n 1 265 PRO n 1 266 PHE n 1 267 GLY n 1 268 THR n 1 269 VAL n 1 270 ASN n 1 271 LEU n 1 272 LEU n 1 273 ALA n 1 274 TYR n 1 275 ASN n 1 276 ASN n 1 277 TYR n 1 278 GLN n 1 279 ALA n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 279 _entity_src_nat.common_name 'Engyodontium album, Tritirachium album' _entity_src_nat.pdbx_organism_scientific 'Parengyodontium album' _entity_src_nat.pdbx_ncbi_taxonomy_id 37998 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PRTK_PARAQ _struct_ref.pdbx_db_accession P06873 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AAQTNAPWGLARISSTSPGTSTYYYDESAGQGSCVYVIDTGIEASHPEFEGRAQMVKTYYYSSRDGNGHGTHCAGTVGSR TYGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGGYSSSVNSAAARLQSSGVMVAVAAG NNNADARNYSPASEPSVCTVGASDRYDRRSSFSNYGSVLDIFGPGTSILSTWIGGSTRSISGTSMATPHVAGLAAYLMTL GKTTAASACRYIADTANKGDLSNIPFGTVNLLAYNNYQA ; _struct_ref.pdbx_align_begin 106 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6PKK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 279 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P06873 _struct_ref_seq.db_align_beg 106 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 384 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 106 _struct_ref_seq.pdbx_auth_seq_align_end 384 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6PKK _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON CRYSTALLOGRAPHY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6PKK _refine.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.176 _refine.ls_d_res_low 41.634 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 13203 _refine.ls_number_reflns_R_free 1477 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 94.46 _refine.ls_percent_reflns_R_free 6.48 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2258 _refine.ls_R_factor_R_free 0.2649 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2231 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.33 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details 'copied from 6cl7' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 30.08 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.42 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON CRYSTALLOGRAPHY' ? 0.004 ? 2070 ? f_bond_d ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.583 ? 2814 ? f_angle_d ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 2.682 ? 1208 ? f_dihedral_angle_d ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.040 ? 312 ? f_chiral_restr ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.004 ? 370 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'ELECTRON CRYSTALLOGRAPHY' 2.1738 2.2440 . . 73 1178 56.00 . . . 0.4562 . 0.4214 . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 2.2440 2.3242 . . 148 1728 83.00 . . . 0.3831 . 0.3682 . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 2.3242 2.4172 . . 117 2045 97.00 . . . 0.3986 . 0.3172 . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 2.4172 2.5272 . . 158 2063 99.00 . . . 0.3210 . 0.2973 . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 2.5272 2.6604 . . 141 2082 99.00 . . . 0.3549 . 0.2914 . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 2.6604 2.8271 . . 139 2073 99.00 . . . 0.3275 . 0.2824 . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 2.8271 3.0453 . . 136 2074 99.00 . . . 0.3234 . 0.2651 . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 3.0453 3.3516 . . 142 2058 98.00 . . . 0.2690 . 0.2256 . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 3.3516 3.8363 . . 144 2043 98.00 . . . 0.2286 . 0.1744 . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 3.8363 4.8322 . . 140 2038 97.00 . . . 0.1651 . 0.1433 . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 4.8322 41.6414 . . 139 1938 93.00 . . . 0.2260 . 0.1716 . . . . . . . . . . # _struct.entry_id 6PKK _struct.title 'MicroED structure of proteinase K from an uncoated, single lamella at 2.18A resolution (#5)' _struct.pdbx_descriptor 'Proteinase K (E.C.3.4.21.64)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6PKK _struct_keywords.text Hydrolase _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PRO A 7 ? ILE A 13 ? PRO A 112 ILE A 118 1 ? 7 HELX_P HELX_P2 AA2 GLY A 68 ? SER A 79 ? GLY A 173 SER A 184 1 ? 12 HELX_P HELX_P3 AA3 GLN A 103 ? LYS A 118 ? GLN A 208 LYS A 223 1 ? 16 HELX_P HELX_P4 AA4 ASN A 119 ? ARG A 121 ? ASN A 224 ARG A 226 5 ? 3 HELX_P HELX_P5 AA5 SER A 138 ? SER A 151 ? SER A 243 SER A 256 1 ? 14 HELX_P HELX_P6 AA6 ASP A 165 ? ARG A 167 ? ASP A 270 ARG A 272 5 ? 3 HELX_P HELX_P7 AA7 GLY A 222 ? LEU A 240 ? GLY A 327 LEU A 345 1 ? 19 HELX_P HELX_P8 AA8 SER A 247 ? THR A 255 ? SER A 352 THR A 360 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 34 SG ? ? ? 1_555 A CYS 123 SG ? ? A CYS 139 A CYS 228 1_555 ? ? ? ? ? ? ? 2.028 ? disulf2 disulf ? ? A CYS 178 SG ? ? ? 1_555 A CYS 249 SG ? ? A CYS 283 A CYS 354 1_555 ? ? ? ? ? ? ? 2.130 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 170 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 275 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 171 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 276 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.85 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 7 ? AA3 ? 2 ? AA4 ? 2 ? AA5 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA2 3 4 ? parallel AA2 4 5 ? parallel AA2 5 6 ? parallel AA2 6 7 ? parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel AA5 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ALA A 2 ? GLN A 3 ? ALA A 107 GLN A 108 AA1 2 TYR A 23 ? TYR A 24 ? TYR A 128 TYR A 129 AA2 1 ALA A 53 ? THR A 58 ? ALA A 158 THR A 163 AA2 2 GLN A 89 ? LYS A 94 ? GLN A 194 LYS A 199 AA2 3 SER A 33 ? ASP A 39 ? SER A 138 ASP A 144 AA2 4 GLY A 126 ? LEU A 131 ? GLY A 231 LEU A 236 AA2 5 VAL A 153 ? ALA A 158 ? VAL A 258 ALA A 263 AA2 6 CYS A 178 ? SER A 183 ? CYS A 283 SER A 288 AA2 7 ILE A 201 ? PRO A 204 ? ILE A 306 PRO A 309 AA3 1 GLY A 135 ? GLY A 136 ? GLY A 240 GLY A 241 AA3 2 TYR A 169 ? SER A 170 ? TYR A 274 SER A 275 AA4 1 ILE A 208 ? TRP A 212 ? ILE A 313 TRP A 317 AA4 2 SER A 216 ? ILE A 220 ? SER A 321 ILE A 325 AA5 1 ASN A 257 ? LYS A 258 ? ASN A 362 LYS A 363 AA5 2 LEU A 271 ? LEU A 272 ? LEU A 376 LEU A 377 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLN A 3 ? N GLN A 108 O TYR A 23 ? O TYR A 128 AA2 1 2 N VAL A 56 ? N VAL A 161 O GLY A 92 ? O GLY A 197 AA2 2 3 O PHE A 91 ? O PHE A 196 N VAL A 37 ? N VAL A 142 AA2 3 4 N TYR A 36 ? N TYR A 141 O VAL A 128 ? O VAL A 233 AA2 4 5 N ALA A 129 ? N ALA A 234 O MET A 154 ? O MET A 259 AA2 5 6 N VAL A 157 ? N VAL A 262 O VAL A 180 ? O VAL A 285 AA2 6 7 N GLY A 181 ? N GLY A 286 O GLY A 203 ? O GLY A 308 AA3 1 2 N GLY A 135 ? N GLY A 240 O SER A 170 ? O SER A 275 AA4 1 2 N ILE A 208 ? N ILE A 313 O ILE A 220 ? O ILE A 325 AA5 1 2 N ASN A 257 ? N ASN A 362 O LEU A 272 ? O LEU A 377 # _atom_sites.entry_id 6PKK _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.014799 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014799 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009459 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 106 106 ALA ALA A . n A 1 2 ALA 2 107 107 ALA ALA A . n A 1 3 GLN 3 108 108 GLN GLN A . n A 1 4 THR 4 109 109 THR THR A . n A 1 5 ASN 5 110 110 ASN ASN A . n A 1 6 ALA 6 111 111 ALA ALA A . n A 1 7 PRO 7 112 112 PRO PRO A . n A 1 8 TRP 8 113 113 TRP TRP A . n A 1 9 GLY 9 114 114 GLY GLY A . n A 1 10 LEU 10 115 115 LEU LEU A . n A 1 11 ALA 11 116 116 ALA ALA A . n A 1 12 ARG 12 117 117 ARG ARG A . n A 1 13 ILE 13 118 118 ILE ILE A . n A 1 14 SER 14 119 119 SER SER A . n A 1 15 SER 15 120 120 SER SER A . n A 1 16 THR 16 121 121 THR THR A . n A 1 17 SER 17 122 122 SER SER A . n A 1 18 PRO 18 123 123 PRO PRO A . n A 1 19 GLY 19 124 124 GLY GLY A . n A 1 20 THR 20 125 125 THR THR A . n A 1 21 SER 21 126 126 SER SER A . n A 1 22 THR 22 127 127 THR THR A . n A 1 23 TYR 23 128 128 TYR TYR A . n A 1 24 TYR 24 129 129 TYR TYR A . n A 1 25 TYR 25 130 130 TYR TYR A . n A 1 26 ASP 26 131 131 ASP ASP A . n A 1 27 GLU 27 132 132 GLU GLU A . n A 1 28 SER 28 133 133 SER SER A . n A 1 29 ALA 29 134 134 ALA ALA A . n A 1 30 GLY 30 135 135 GLY GLY A . n A 1 31 GLN 31 136 136 GLN GLN A . n A 1 32 GLY 32 137 137 GLY GLY A . n A 1 33 SER 33 138 138 SER SER A . n A 1 34 CYS 34 139 139 CYS CYS A . n A 1 35 VAL 35 140 140 VAL VAL A . n A 1 36 TYR 36 141 141 TYR TYR A . n A 1 37 VAL 37 142 142 VAL VAL A . n A 1 38 ILE 38 143 143 ILE ILE A . n A 1 39 ASP 39 144 144 ASP ASP A . n A 1 40 THR 40 145 145 THR THR A . n A 1 41 GLY 41 146 146 GLY GLY A . n A 1 42 ILE 42 147 147 ILE ILE A . n A 1 43 GLU 43 148 148 GLU GLU A . n A 1 44 ALA 44 149 149 ALA ALA A . n A 1 45 SER 45 150 150 SER SER A . n A 1 46 HIS 46 151 151 HIS HIS A . n A 1 47 PRO 47 152 152 PRO PRO A . n A 1 48 GLU 48 153 153 GLU GLU A . n A 1 49 PHE 49 154 154 PHE PHE A . n A 1 50 GLU 50 155 155 GLU GLU A . n A 1 51 GLY 51 156 156 GLY GLY A . n A 1 52 ARG 52 157 157 ARG ARG A . n A 1 53 ALA 53 158 158 ALA ALA A . n A 1 54 GLN 54 159 159 GLN GLN A . n A 1 55 MET 55 160 160 MET MET A . n A 1 56 VAL 56 161 161 VAL VAL A . n A 1 57 LYS 57 162 162 LYS LYS A . n A 1 58 THR 58 163 163 THR THR A . n A 1 59 TYR 59 164 164 TYR TYR A . n A 1 60 TYR 60 165 165 TYR TYR A . n A 1 61 TYR 61 166 166 TYR TYR A . n A 1 62 SER 62 167 167 SER SER A . n A 1 63 SER 63 168 168 SER SER A . n A 1 64 ARG 64 169 169 ARG ARG A . n A 1 65 ASP 65 170 170 ASP ASP A . n A 1 66 GLY 66 171 171 GLY GLY A . n A 1 67 ASN 67 172 172 ASN ASN A . n A 1 68 GLY 68 173 173 GLY GLY A . n A 1 69 HIS 69 174 174 HIS HIS A . n A 1 70 GLY 70 175 175 GLY GLY A . n A 1 71 THR 71 176 176 THR THR A . n A 1 72 HIS 72 177 177 HIS HIS A . n A 1 73 CYS 73 178 178 CYS CYS A . n A 1 74 ALA 74 179 179 ALA ALA A . n A 1 75 GLY 75 180 180 GLY GLY A . n A 1 76 THR 76 181 181 THR THR A . n A 1 77 VAL 77 182 182 VAL VAL A . n A 1 78 GLY 78 183 183 GLY GLY A . n A 1 79 SER 79 184 184 SER SER A . n A 1 80 ARG 80 185 185 ARG ARG A . n A 1 81 THR 81 186 186 THR THR A . n A 1 82 TYR 82 187 187 TYR TYR A . n A 1 83 GLY 83 188 188 GLY GLY A . n A 1 84 VAL 84 189 189 VAL VAL A . n A 1 85 ALA 85 190 190 ALA ALA A . n A 1 86 LYS 86 191 191 LYS LYS A . n A 1 87 LYS 87 192 192 LYS LYS A . n A 1 88 THR 88 193 193 THR THR A . n A 1 89 GLN 89 194 194 GLN GLN A . n A 1 90 LEU 90 195 195 LEU LEU A . n A 1 91 PHE 91 196 196 PHE PHE A . n A 1 92 GLY 92 197 197 GLY GLY A . n A 1 93 VAL 93 198 198 VAL VAL A . n A 1 94 LYS 94 199 199 LYS LYS A . n A 1 95 VAL 95 200 200 VAL VAL A . n A 1 96 LEU 96 201 201 LEU LEU A . n A 1 97 ASP 97 202 202 ASP ASP A . n A 1 98 ASP 98 203 203 ASP ASP A . n A 1 99 ASN 99 204 204 ASN ASN A . n A 1 100 GLY 100 205 205 GLY GLY A . n A 1 101 SER 101 206 206 SER SER A . n A 1 102 GLY 102 207 207 GLY GLY A . n A 1 103 GLN 103 208 208 GLN GLN A . n A 1 104 TYR 104 209 209 TYR TYR A . n A 1 105 SER 105 210 210 SER SER A . n A 1 106 THR 106 211 211 THR THR A . n A 1 107 ILE 107 212 212 ILE ILE A . n A 1 108 ILE 108 213 213 ILE ILE A . n A 1 109 ALA 109 214 214 ALA ALA A . n A 1 110 GLY 110 215 215 GLY GLY A . n A 1 111 MET 111 216 216 MET MET A . n A 1 112 ASP 112 217 217 ASP ASP A . n A 1 113 PHE 113 218 218 PHE PHE A . n A 1 114 VAL 114 219 219 VAL VAL A . n A 1 115 ALA 115 220 220 ALA ALA A . n A 1 116 SER 116 221 221 SER SER A . n A 1 117 ASP 117 222 222 ASP ASP A . n A 1 118 LYS 118 223 223 LYS LYS A . n A 1 119 ASN 119 224 224 ASN ASN A . n A 1 120 ASN 120 225 225 ASN ASN A . n A 1 121 ARG 121 226 226 ARG ARG A . n A 1 122 ASN 122 227 227 ASN ASN A . n A 1 123 CYS 123 228 228 CYS CYS A . n A 1 124 PRO 124 229 229 PRO PRO A . n A 1 125 LYS 125 230 230 LYS LYS A . n A 1 126 GLY 126 231 231 GLY GLY A . n A 1 127 VAL 127 232 232 VAL VAL A . n A 1 128 VAL 128 233 233 VAL VAL A . n A 1 129 ALA 129 234 234 ALA ALA A . n A 1 130 SER 130 235 235 SER SER A . n A 1 131 LEU 131 236 236 LEU LEU A . n A 1 132 SER 132 237 237 SER SER A . n A 1 133 LEU 133 238 238 LEU LEU A . n A 1 134 GLY 134 239 239 GLY GLY A . n A 1 135 GLY 135 240 240 GLY GLY A . n A 1 136 GLY 136 241 241 GLY GLY A . n A 1 137 TYR 137 242 242 TYR TYR A . n A 1 138 SER 138 243 243 SER SER A . n A 1 139 SER 139 244 244 SER SER A . n A 1 140 SER 140 245 245 SER SER A . n A 1 141 VAL 141 246 246 VAL VAL A . n A 1 142 ASN 142 247 247 ASN ASN A . n A 1 143 SER 143 248 248 SER SER A . n A 1 144 ALA 144 249 249 ALA ALA A . n A 1 145 ALA 145 250 250 ALA ALA A . n A 1 146 ALA 146 251 251 ALA ALA A . n A 1 147 ARG 147 252 252 ARG ARG A . n A 1 148 LEU 148 253 253 LEU LEU A . n A 1 149 GLN 149 254 254 GLN GLN A . n A 1 150 SER 150 255 255 SER SER A . n A 1 151 SER 151 256 256 SER SER A . n A 1 152 GLY 152 257 257 GLY GLY A . n A 1 153 VAL 153 258 258 VAL VAL A . n A 1 154 MET 154 259 259 MET MET A . n A 1 155 VAL 155 260 260 VAL VAL A . n A 1 156 ALA 156 261 261 ALA ALA A . n A 1 157 VAL 157 262 262 VAL VAL A . n A 1 158 ALA 158 263 263 ALA ALA A . n A 1 159 ALA 159 264 264 ALA ALA A . n A 1 160 GLY 160 265 265 GLY GLY A . n A 1 161 ASN 161 266 266 ASN ASN A . n A 1 162 ASN 162 267 267 ASN ASN A . n A 1 163 ASN 163 268 268 ASN ASN A . n A 1 164 ALA 164 269 269 ALA ALA A . n A 1 165 ASP 165 270 270 ASP ASP A . n A 1 166 ALA 166 271 271 ALA ALA A . n A 1 167 ARG 167 272 272 ARG ARG A . n A 1 168 ASN 168 273 273 ASN ASN A . n A 1 169 TYR 169 274 274 TYR TYR A . n A 1 170 SER 170 275 275 SER SER A . n A 1 171 PRO 171 276 276 PRO PRO A . n A 1 172 ALA 172 277 277 ALA ALA A . n A 1 173 SER 173 278 278 SER SER A . n A 1 174 GLU 174 279 279 GLU GLU A . n A 1 175 PRO 175 280 280 PRO PRO A . n A 1 176 SER 176 281 281 SER SER A . n A 1 177 VAL 177 282 282 VAL VAL A . n A 1 178 CYS 178 283 283 CYS CYS A . n A 1 179 THR 179 284 284 THR THR A . n A 1 180 VAL 180 285 285 VAL VAL A . n A 1 181 GLY 181 286 286 GLY GLY A . n A 1 182 ALA 182 287 287 ALA ALA A . n A 1 183 SER 183 288 288 SER SER A . n A 1 184 ASP 184 289 289 ASP ASP A . n A 1 185 ARG 185 290 290 ARG ARG A . n A 1 186 TYR 186 291 291 TYR TYR A . n A 1 187 ASP 187 292 292 ASP ASP A . n A 1 188 ARG 188 293 293 ARG ARG A . n A 1 189 ARG 189 294 294 ARG ARG A . n A 1 190 SER 190 295 295 SER SER A . n A 1 191 SER 191 296 296 SER SER A . n A 1 192 PHE 192 297 297 PHE PHE A . n A 1 193 SER 193 298 298 SER SER A . n A 1 194 ASN 194 299 299 ASN ASN A . n A 1 195 TYR 195 300 300 TYR TYR A . n A 1 196 GLY 196 301 301 GLY GLY A . n A 1 197 SER 197 302 302 SER SER A . n A 1 198 VAL 198 303 303 VAL VAL A . n A 1 199 LEU 199 304 304 LEU LEU A . n A 1 200 ASP 200 305 305 ASP ASP A . n A 1 201 ILE 201 306 306 ILE ILE A . n A 1 202 PHE 202 307 307 PHE PHE A . n A 1 203 GLY 203 308 308 GLY GLY A . n A 1 204 PRO 204 309 309 PRO PRO A . n A 1 205 GLY 205 310 310 GLY GLY A . n A 1 206 THR 206 311 311 THR THR A . n A 1 207 SER 207 312 312 SER SER A . n A 1 208 ILE 208 313 313 ILE ILE A . n A 1 209 LEU 209 314 314 LEU LEU A . n A 1 210 SER 210 315 315 SER SER A . n A 1 211 THR 211 316 316 THR THR A . n A 1 212 TRP 212 317 317 TRP TRP A . n A 1 213 ILE 213 318 318 ILE ILE A . n A 1 214 GLY 214 319 319 GLY GLY A . n A 1 215 GLY 215 320 320 GLY GLY A . n A 1 216 SER 216 321 321 SER SER A . n A 1 217 THR 217 322 322 THR THR A . n A 1 218 ARG 218 323 323 ARG ARG A . n A 1 219 SER 219 324 324 SER SER A . n A 1 220 ILE 220 325 325 ILE ILE A . n A 1 221 SER 221 326 326 SER SER A . n A 1 222 GLY 222 327 327 GLY GLY A . n A 1 223 THR 223 328 328 THR THR A . n A 1 224 SER 224 329 329 SER SER A . n A 1 225 MET 225 330 330 MET MET A . n A 1 226 ALA 226 331 331 ALA ALA A . n A 1 227 THR 227 332 332 THR THR A . n A 1 228 PRO 228 333 333 PRO PRO A . n A 1 229 HIS 229 334 334 HIS HIS A . n A 1 230 VAL 230 335 335 VAL VAL A . n A 1 231 ALA 231 336 336 ALA ALA A . n A 1 232 GLY 232 337 337 GLY GLY A . n A 1 233 LEU 233 338 338 LEU LEU A . n A 1 234 ALA 234 339 339 ALA ALA A . n A 1 235 ALA 235 340 340 ALA ALA A . n A 1 236 TYR 236 341 341 TYR TYR A . n A 1 237 LEU 237 342 342 LEU LEU A . n A 1 238 MET 238 343 343 MET MET A . n A 1 239 THR 239 344 344 THR THR A . n A 1 240 LEU 240 345 345 LEU LEU A . n A 1 241 GLY 241 346 346 GLY GLY A . n A 1 242 LYS 242 347 347 LYS LYS A . n A 1 243 THR 243 348 348 THR THR A . n A 1 244 THR 244 349 349 THR THR A . n A 1 245 ALA 245 350 350 ALA ALA A . n A 1 246 ALA 246 351 351 ALA ALA A . n A 1 247 SER 247 352 352 SER SER A . n A 1 248 ALA 248 353 353 ALA ALA A . n A 1 249 CYS 249 354 354 CYS CYS A . n A 1 250 ARG 250 355 355 ARG ARG A . n A 1 251 TYR 251 356 356 TYR TYR A . n A 1 252 ILE 252 357 357 ILE ILE A . n A 1 253 ALA 253 358 358 ALA ALA A . n A 1 254 ASP 254 359 359 ASP ASP A . n A 1 255 THR 255 360 360 THR THR A . n A 1 256 ALA 256 361 361 ALA ALA A . n A 1 257 ASN 257 362 362 ASN ASN A . n A 1 258 LYS 258 363 363 LYS LYS A . n A 1 259 GLY 259 364 364 GLY GLY A . n A 1 260 ASP 260 365 365 ASP ASP A . n A 1 261 LEU 261 366 366 LEU LEU A . n A 1 262 SER 262 367 367 SER SER A . n A 1 263 ASN 263 368 368 ASN ASN A . n A 1 264 ILE 264 369 369 ILE ILE A . n A 1 265 PRO 265 370 370 PRO PRO A . n A 1 266 PHE 266 371 371 PHE PHE A . n A 1 267 GLY 267 372 372 GLY GLY A . n A 1 268 THR 268 373 373 THR THR A . n A 1 269 VAL 269 374 374 VAL VAL A . n A 1 270 ASN 270 375 375 ASN ASN A . n A 1 271 LEU 271 376 376 LEU LEU A . n A 1 272 LEU 272 377 377 LEU LEU A . n A 1 273 ALA 273 378 378 ALA ALA A . n A 1 274 TYR 274 379 379 TYR TYR A . n A 1 275 ASN 275 380 380 ASN ASN A . n A 1 276 ASN 276 381 381 ASN ASN A . n A 1 277 TYR 277 382 382 TYR TYR A . n A 1 278 GLN 278 383 383 GLN GLN A . n A 1 279 ALA 279 384 384 ALA ALA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 401 35 HOH HOH A . B 2 HOH 2 402 34 HOH HOH A . B 2 HOH 3 403 23 HOH HOH A . B 2 HOH 4 404 53 HOH HOH A . B 2 HOH 5 405 3 HOH HOH A . B 2 HOH 6 406 46 HOH HOH A . B 2 HOH 7 407 12 HOH HOH A . B 2 HOH 8 408 8 HOH HOH A . B 2 HOH 9 409 2 HOH HOH A . B 2 HOH 10 410 17 HOH HOH A . B 2 HOH 11 411 29 HOH HOH A . B 2 HOH 12 412 33 HOH HOH A . B 2 HOH 13 413 7 HOH HOH A . B 2 HOH 14 414 1 HOH HOH A . B 2 HOH 15 415 30 HOH HOH A . B 2 HOH 16 416 49 HOH HOH A . B 2 HOH 17 417 11 HOH HOH A . B 2 HOH 18 418 54 HOH HOH A . B 2 HOH 19 419 18 HOH HOH A . B 2 HOH 20 420 9 HOH HOH A . B 2 HOH 21 421 45 HOH HOH A . B 2 HOH 22 422 38 HOH HOH A . B 2 HOH 23 423 4 HOH HOH A . B 2 HOH 24 424 50 HOH HOH A . B 2 HOH 25 425 21 HOH HOH A . B 2 HOH 26 426 6 HOH HOH A . B 2 HOH 27 427 56 HOH HOH A . B 2 HOH 28 428 31 HOH HOH A . B 2 HOH 29 429 13 HOH HOH A . B 2 HOH 30 430 42 HOH HOH A . B 2 HOH 31 431 24 HOH HOH A . B 2 HOH 32 432 15 HOH HOH A . B 2 HOH 33 433 19 HOH HOH A . B 2 HOH 34 434 40 HOH HOH A . B 2 HOH 35 435 10 HOH HOH A . B 2 HOH 36 436 58 HOH HOH A . B 2 HOH 37 437 16 HOH HOH A . B 2 HOH 38 438 47 HOH HOH A . B 2 HOH 39 439 28 HOH HOH A . B 2 HOH 40 440 20 HOH HOH A . B 2 HOH 41 441 48 HOH HOH A . B 2 HOH 42 442 5 HOH HOH A . B 2 HOH 43 443 36 HOH HOH A . B 2 HOH 44 444 32 HOH HOH A . B 2 HOH 45 445 14 HOH HOH A . B 2 HOH 46 446 27 HOH HOH A . B 2 HOH 47 447 59 HOH HOH A . B 2 HOH 48 448 51 HOH HOH A . B 2 HOH 49 449 25 HOH HOH A . B 2 HOH 50 450 52 HOH HOH A . B 2 HOH 51 451 44 HOH HOH A . B 2 HOH 52 452 39 HOH HOH A . B 2 HOH 53 453 57 HOH HOH A . B 2 HOH 54 454 55 HOH HOH A . B 2 HOH 55 455 26 HOH HOH A . B 2 HOH 56 456 43 HOH HOH A . B 2 HOH 57 457 41 HOH HOH A . B 2 HOH 58 458 37 HOH HOH A . B 2 HOH 59 459 22 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 10140 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-09-04 2 'Structure model' 1 1 2019-10-16 3 'Structure model' 1 2 2019-12-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Author supporting evidence' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' pdbx_audit_support # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 3 'Structure model' '_pdbx_audit_support.funding_organization' # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version '(1.14_3260: ???)' _software.pdbx_ordinal 1 # _em_3d_fitting.entry_id 6PKK _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value 31.74 _em_3d_fitting.ref_protocol 'RIGID BODY FIT' _em_3d_fitting.ref_space RECIPROCAL _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.id 1 _em_3d_fitting_list.details ? _em_3d_fitting_list.pdb_chain_id A _em_3d_fitting_list.pdb_chain_residue_range 106-384 _em_3d_fitting_list.pdb_entry_id 6CL7 # _em_3d_reconstruction.entry_id 6PKK _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles ? _em_3d_reconstruction.resolution 2.176 _em_3d_reconstruction.resolution_method 'DIFFRACTION PATTERN/LAYERLINES' _em_3d_reconstruction.symmetry_type '3D CRYSTAL' _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.5 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'Proteinase K' _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 6PKK _em_image_scans.id 1 _em_image_scans.dimension_height 4096 _em_image_scans.dimension_width 4096 _em_image_scans.frames_per_image ? _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size 28 _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image ? _em_image_scans.citation_id ? _em_image_scans.number_digital_images ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.details ? # _em_imaging.id 1 _em_imaging.entry_id 6PKK _em_imaging.accelerating_voltage 200 _em_imaging.alignment_procedure BASIC _em_imaging.c2_aperture_diameter 100 _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TALOS ARCTICA' _em_imaging.mode DIFFRACTION _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum 90 _em_imaging.recording_temperature_minimum 77 _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details unspecified _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 273.0 _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity 100 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 6PKK _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 6PKK _em_experiment.id 1 _em_experiment.aggregation_state '3D ARRAY' _em_experiment.reconstruction_method CRYSTALLOGRAPHY _em_experiment.entity_assembly_id 1 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OG A SER 367 ? ? O A HOH 401 ? ? 1.87 2 1 ND1 A HIS 177 ? ? O A HOH 402 ? ? 2.02 3 1 O A GLY 171 ? ? O A HOH 403 ? ? 2.03 4 1 N A GLN 383 ? ? O A HOH 404 ? ? 2.05 5 1 O A HOH 448 ? ? O A HOH 454 ? ? 2.07 6 1 O A GLY 301 ? ? O A HOH 405 ? ? 2.15 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 144 ? ? -157.83 -146.22 2 1 VAL A 182 ? ? -62.93 -71.13 3 1 ASP A 202 ? ? -64.19 -177.42 4 1 CYS A 228 ? ? -119.03 69.15 5 1 LEU A 238 ? ? -171.04 -160.74 6 1 ASN A 266 ? ? -103.00 44.87 # _em_3d_crystal_entity.id 1 _em_3d_crystal_entity.image_processing_id 1 _em_3d_crystal_entity.angle_alpha 90 _em_3d_crystal_entity.angle_beta 90 _em_3d_crystal_entity.angle_gamma 90 _em_3d_crystal_entity.length_a 67.6 _em_3d_crystal_entity.length_b 67.6 _em_3d_crystal_entity.length_c 105.7 _em_3d_crystal_entity.space_group_name 96 _em_3d_crystal_entity.space_group_num 96 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type NONE _em_ctf_correction.details NONE # _em_diffraction.id 1 _em_diffraction.camera_length 2055 _em_diffraction.imaging_id 1 _em_diffraction.tilt_angle_list -30,30 # _em_diffraction_shell.id 1 _em_diffraction_shell.em_diffraction_stats_id 1 _em_diffraction_shell.fourier_space_coverage 94.46 _em_diffraction_shell.high_resolution 2.176 _em_diffraction_shell.low_resolution 41.63 _em_diffraction_shell.multiplicity 4.8 _em_diffraction_shell.num_structure_factors 6496 _em_diffraction_shell.phase_residual 30.1 # _em_diffraction_stats.id 1 _em_diffraction_stats.details ? _em_diffraction_stats.image_processing_id 1 _em_diffraction_stats.fourier_space_coverage 94.46 _em_diffraction_stats.high_resolution 2.176 _em_diffraction_stats.num_intensities_measured 63830 _em_diffraction_stats.num_structure_factors 6496 _em_diffraction_stats.overall_phase_error 30.1 _em_diffraction_stats.overall_phase_residual 30.1 _em_diffraction_stats.phase_error_rejection_criteria 0 _em_diffraction_stats.r_merge 0.44 _em_diffraction_stats.r_sym 0.5 # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 0.02893 # _em_entity_assembly_naturalsource.id 1 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 37998 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Parengyodontium album' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details 'This was the new CetaD.' # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 0.03 _em_image_recording.average_exposure_time 3 _em_image_recording.details 'Continuous rotation with a rotation rate of 0.2 degrees per second and a readout every 3 seconds' _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'FEI CETA (4k x 4k)' _em_image_recording.num_diffraction_images 100 _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 100 # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'IMAGE ACQUISITION' ? ? ? ? ? 1 2 MASKING ? ? ? ? ? ? 3 'CTF CORRECTION' ? ? ? 1 ? ? 4 'LAYERLINE INDEXING' ? ? ? ? ? ? 5 'DIFFRACTION INDEXING' ? ? ? ? ? ? 6 'MODEL FITTING' ? PHENIX 1.15 ? 1 ? 7 OTHER ? ? ? ? ? ? 8 'MOLECULAR REPLACEMENT' ? PHENIX 2.8.2 1 ? ? 9 'LATTICE DISTORTION CORRECTION' ? ? ? 1 ? ? 10 'SYMMETRY DETERMINATION' ? ? ? 1 ? ? 11 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 ? ? 12 RECONSTRUCTION ? PHENIX 1.15.2 1 ? ? 13 'MODEL REFINEMENT' ? PHENIX 1.15 ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 20 _em_specimen.details 'Proteinase K purchased from Sigma.' _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)' 'United States' 'R35 GM122588' 1 'National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)' 'United States' 2P50GM082545 2 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details PISA #