HEADER OXIDOREDUCTASE/INHIBITOR 01-JUL-19 6PMF TITLE CRYSTAL STRUCTURE OF ECDSBA IN COMPLEX WITH ANILINE 15 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL:DISULFIDE INTERCHANGE PROTEIN DSBA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: DSBA, DSF, PPFA, B3860, JW3832; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: B0013 KEYWDS DISULFIDE OXIDOREDUCTASE, REDOX PROTEIN, OXIDOREDUCTASE-INHIBITOR KEYWDS 2 COMPLEX, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR O.V.ILYICHOVA,M.J.SCANLON REVDAT 4 11-OCT-23 6PMF 1 REMARK REVDAT 3 07-OCT-20 6PMF 1 JRNL REVDAT 2 08-JAN-20 6PMF 1 REMARK REVDAT 1 06-NOV-19 6PMF 0 JRNL AUTH L.F.DUNCAN,G.WANG,O.V.ILYICHOVA,M.J.SCANLON,B.HERAS, JRNL AUTH 2 B.M.ABBOTT JRNL TITL THE FRAGMENT-BASED DEVELOPMENT OF A BENZOFURAN HIT AS A NEW JRNL TITL 2 CLASS OF ESCHERICHIA COLI DSBA INHIBITORS. JRNL REF MOLECULES V. 24 2019 JRNL REFN ESSN 1420-3049 JRNL PMID 31635355 JRNL DOI 10.3390/MOLECULES24203756 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3211 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 33049 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1652 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.2800 - 4.4600 1.00 2679 161 0.1549 0.1896 REMARK 3 2 4.4600 - 3.5400 1.00 2611 159 0.1506 0.1795 REMARK 3 3 3.5400 - 3.1000 1.00 2631 143 0.1845 0.1986 REMARK 3 4 3.1000 - 2.8100 1.00 2589 145 0.2054 0.2591 REMARK 3 5 2.8100 - 2.6100 1.00 2644 120 0.2026 0.2676 REMARK 3 6 2.6100 - 2.4600 1.00 2630 111 0.2197 0.2307 REMARK 3 7 2.4600 - 2.3300 1.00 2658 102 0.2120 0.2357 REMARK 3 8 2.3300 - 2.2300 1.00 2618 118 0.2227 0.2910 REMARK 3 9 2.2300 - 2.1500 1.00 2572 159 0.2311 0.2952 REMARK 3 10 2.1500 - 2.0700 1.00 2604 133 0.2484 0.3260 REMARK 3 11 2.0700 - 2.0100 1.00 2562 165 0.2770 0.3264 REMARK 3 12 2.0100 - 1.9500 0.99 2599 136 0.3108 0.3674 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.251 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.724 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.54 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2989 REMARK 3 ANGLE : 0.572 4067 REMARK 3 CHIRALITY : 0.039 449 REMARK 3 PLANARITY : 0.004 532 REMARK 3 DIHEDRAL : 2.954 2387 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.2197 -9.7157 1.1909 REMARK 3 T TENSOR REMARK 3 T11: 0.2932 T22: 0.3138 REMARK 3 T33: 0.2470 T12: -0.0697 REMARK 3 T13: 0.0049 T23: -0.0276 REMARK 3 L TENSOR REMARK 3 L11: 1.0966 L22: 3.9178 REMARK 3 L33: 2.5808 L12: 0.3006 REMARK 3 L13: 1.1980 L23: 2.6051 REMARK 3 S TENSOR REMARK 3 S11: 0.0938 S12: 0.0782 S13: -0.0406 REMARK 3 S21: -0.1509 S22: 0.0016 S23: 0.0478 REMARK 3 S31: -0.0139 S32: 0.1025 S33: -0.0520 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.2615 -0.7414 16.7172 REMARK 3 T TENSOR REMARK 3 T11: 0.2125 T22: 0.2527 REMARK 3 T33: 0.1983 T12: -0.0249 REMARK 3 T13: 0.0019 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 1.8873 L22: 1.9706 REMARK 3 L33: 2.8266 L12: 0.3077 REMARK 3 L13: 0.2428 L23: 0.0714 REMARK 3 S TENSOR REMARK 3 S11: -0.1229 S12: -0.0437 S13: 0.1039 REMARK 3 S21: -0.0633 S22: 0.0567 S23: -0.1285 REMARK 3 S31: 0.1205 S32: 0.2255 S33: 0.0537 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 146 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.3905 -13.3639 -3.6515 REMARK 3 T TENSOR REMARK 3 T11: 0.2566 T22: 0.2515 REMARK 3 T33: 0.2189 T12: 0.0004 REMARK 3 T13: -0.0445 T23: -0.0326 REMARK 3 L TENSOR REMARK 3 L11: 2.6231 L22: 3.7091 REMARK 3 L33: 3.2154 L12: 1.2886 REMARK 3 L13: -0.8560 L23: 0.5240 REMARK 3 S TENSOR REMARK 3 S11: 0.0858 S12: 0.0655 S13: 0.1035 REMARK 3 S21: -0.2682 S22: 0.0010 S23: 0.2717 REMARK 3 S31: -0.1216 S32: 0.2549 S33: -0.1239 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.8634 0.9024 20.6240 REMARK 3 T TENSOR REMARK 3 T11: 0.4858 T22: 0.3116 REMARK 3 T33: 0.4081 T12: 0.1038 REMARK 3 T13: 0.1299 T23: 0.0391 REMARK 3 L TENSOR REMARK 3 L11: 1.0886 L22: 2.9255 REMARK 3 L33: 1.4453 L12: 1.1925 REMARK 3 L13: -0.3149 L23: 1.1645 REMARK 3 S TENSOR REMARK 3 S11: 0.3328 S12: 0.0435 S13: 0.5786 REMARK 3 S21: -0.1964 S22: -0.1369 S23: 0.3106 REMARK 3 S31: -0.6570 S32: -0.3923 S33: -0.1756 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 39 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.4672 -5.5940 31.2215 REMARK 3 T TENSOR REMARK 3 T11: 0.3934 T22: 0.1951 REMARK 3 T33: 0.4525 T12: -0.0089 REMARK 3 T13: 0.1754 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 6.5240 L22: 2.3066 REMARK 3 L33: 3.4238 L12: -1.7887 REMARK 3 L13: -2.7837 L23: 1.9336 REMARK 3 S TENSOR REMARK 3 S11: 0.1823 S12: -0.2527 S13: -0.3322 REMARK 3 S21: 0.2330 S22: -0.2206 S23: 0.7756 REMARK 3 S31: 0.2208 S32: -0.0449 S33: 0.0927 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 50 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3123 -6.7847 18.8475 REMARK 3 T TENSOR REMARK 3 T11: 0.3839 T22: 0.3964 REMARK 3 T33: 0.4501 T12: 0.0893 REMARK 3 T13: 0.0438 T23: 0.0541 REMARK 3 L TENSOR REMARK 3 L11: 3.2690 L22: 6.8009 REMARK 3 L33: 1.4914 L12: -0.0659 REMARK 3 L13: 2.0601 L23: 1.1086 REMARK 3 S TENSOR REMARK 3 S11: 0.3468 S12: -0.0107 S13: 0.7502 REMARK 3 S21: -0.2056 S22: -0.2992 S23: 0.3404 REMARK 3 S31: -0.2700 S32: -0.5134 S33: -0.0458 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 66 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4776 -21.8793 14.5248 REMARK 3 T TENSOR REMARK 3 T11: 0.2256 T22: 0.2548 REMARK 3 T33: 0.2443 T12: -0.0033 REMARK 3 T13: 0.0099 T23: 0.0190 REMARK 3 L TENSOR REMARK 3 L11: 3.6867 L22: 2.6565 REMARK 3 L33: 2.4298 L12: 0.7581 REMARK 3 L13: -1.8013 L23: 0.5721 REMARK 3 S TENSOR REMARK 3 S11: -0.2752 S12: 0.0291 S13: -0.4380 REMARK 3 S21: -0.1433 S22: 0.0044 S23: -0.0421 REMARK 3 S31: 0.1180 S32: -0.1435 S33: 0.2709 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 129 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6435 -2.7125 13.1890 REMARK 3 T TENSOR REMARK 3 T11: 0.5518 T22: 0.5655 REMARK 3 T33: 0.5084 T12: 0.2871 REMARK 3 T13: 0.0357 T23: 0.2010 REMARK 3 L TENSOR REMARK 3 L11: 2.8045 L22: 0.1097 REMARK 3 L33: 2.7254 L12: 0.1089 REMARK 3 L13: 0.0019 L23: -0.5452 REMARK 3 S TENSOR REMARK 3 S11: 0.3200 S12: 0.4181 S13: 0.9001 REMARK 3 S21: -0.3407 S22: 0.0764 S23: 0.5825 REMARK 3 S31: -0.9941 S32: -0.6303 S33: -0.0648 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 162 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.0988 5.7843 27.0876 REMARK 3 T TENSOR REMARK 3 T11: 0.7444 T22: 0.3434 REMARK 3 T33: 0.6624 T12: -0.1121 REMARK 3 T13: 0.3625 T23: -0.0901 REMARK 3 L TENSOR REMARK 3 L11: 1.2961 L22: 8.7829 REMARK 3 L33: 8.9709 L12: -2.2306 REMARK 3 L13: 1.0220 L23: -8.1135 REMARK 3 S TENSOR REMARK 3 S11: -0.1855 S12: 0.0340 S13: 0.5227 REMARK 3 S21: -0.3424 S22: -0.3263 S23: -0.7630 REMARK 3 S31: -0.6388 S32: 0.8732 S33: 0.4576 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 171 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3412 4.2454 30.7271 REMARK 3 T TENSOR REMARK 3 T11: 0.5703 T22: 0.2735 REMARK 3 T33: 0.6109 T12: 0.0526 REMARK 3 T13: 0.3013 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.8166 L22: 2.7282 REMARK 3 L33: 5.8378 L12: 1.4950 REMARK 3 L13: 0.3202 L23: 0.6245 REMARK 3 S TENSOR REMARK 3 S11: 0.3883 S12: 0.0490 S13: 0.8755 REMARK 3 S21: 0.0824 S22: -0.2784 S23: 0.2332 REMARK 3 S31: -0.3403 S32: -0.4946 S33: 0.0068 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6PMF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1000242733. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95370 REMARK 200 MONOCHROMATOR : DOUBLE SI WITH SAGITTALY BENT REMARK 200 SECOND CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33087 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 57.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.58600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1FVK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11-13 % PEG 8000, 5-7.5% GLYCEROL, REMARK 280 100MM NA CACODYLATE PH6.1, 1MM CUCL2, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.86000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.03500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.86000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.03500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 418 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 189 REMARK 465 LYS B 189 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 7 CD CE NZ REMARK 470 LYS A 14 CG CD CE NZ REMARK 470 LYS A 48 CE NZ REMARK 470 GLU A 52 CG CD OE1 OE2 REMARK 470 ARG A 103 CZ NH1 NH2 REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 GLN A 146 CG CD OE1 NE2 REMARK 470 ARG A 148 CD NE CZ NH1 NH2 REMARK 470 LYS A 158 CG CD CE NZ REMARK 470 GLN A 164 CG CD OE1 NE2 REMARK 470 GLU B 13 CD OE1 OE2 REMARK 470 LYS B 14 CG CD CE NZ REMARK 470 LYS B 47 CG CD CE NZ REMARK 470 GLU B 52 CG CD OE1 OE2 REMARK 470 LYS B 55 CG CD CE NZ REMARK 470 LYS B 70 CG CD CE NZ REMARK 470 LYS B 118 CG CD CE NZ REMARK 470 PHE B 129 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 132 CG CD CE NZ REMARK 470 GLN B 146 CG CD OE1 NE2 REMARK 470 ARG B 148 NE CZ NH1 NH2 REMARK 470 LYS B 158 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 7 -84.09 -107.97 REMARK 500 PRO A 51 175.23 -58.37 REMARK 500 LYS A 98 -62.93 -98.92 REMARK 500 LYS B 7 -82.60 -95.55 REMARK 500 PHE B 63 24.45 -78.25 REMARK 500 LYS B 98 -77.32 -101.10 REMARK 500 SER B 169 -61.93 -93.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 1 N REMARK 620 2 ALA B 1 O 79.2 REMARK 620 3 GLU B 4 OE1 167.8 102.1 REMARK 620 4 ASP B 44 OD1 101.1 24.4 78.4 REMARK 620 5 ASP B 44 OD2 102.9 24.7 77.4 4.1 REMARK 620 6 HOH B 395 O 94.1 89.6 98.0 98.6 94.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LD9 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU B 201 DBREF 6PMF A 1 189 UNP P0AEG4 DSBA_ECOLI 20 208 DBREF 6PMF B 1 189 UNP P0AEG4 DSBA_ECOLI 20 208 SEQRES 1 A 189 ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU GLU SEQRES 2 A 189 LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE PHE SEQRES 3 A 189 SER PHE PHE CYS PRO HIS CYS TYR GLN PHE GLU GLU VAL SEQRES 4 A 189 LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO GLU SEQRES 5 A 189 GLY VAL LYS MET THR LYS TYR HIS VAL ASN PHE MET GLY SEQRES 6 A 189 GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA VAL SEQRES 7 A 189 ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL PRO SEQRES 8 A 189 LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SER SEQRES 9 A 189 ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY ILE SEQRES 10 A 189 LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE VAL SEQRES 11 A 189 VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA ALA SEQRES 12 A 189 ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL ASN SEQRES 13 A 189 GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SER SEQRES 14 A 189 ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR VAL SEQRES 15 A 189 LYS TYR LEU SER GLU LYS LYS SEQRES 1 B 189 ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU GLU SEQRES 2 B 189 LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE PHE SEQRES 3 B 189 SER PHE PHE CYS PRO HIS CYS TYR GLN PHE GLU GLU VAL SEQRES 4 B 189 LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO GLU SEQRES 5 B 189 GLY VAL LYS MET THR LYS TYR HIS VAL ASN PHE MET GLY SEQRES 6 B 189 GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA VAL SEQRES 7 B 189 ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL PRO SEQRES 8 B 189 LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SER SEQRES 9 B 189 ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY ILE SEQRES 10 B 189 LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE VAL SEQRES 11 B 189 VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA ALA SEQRES 12 B 189 ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL ASN SEQRES 13 B 189 GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SER SEQRES 14 B 189 ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR VAL SEQRES 15 B 189 LYS TYR LEU SER GLU LYS LYS HET LD9 A 201 20 HET CU B 201 1 HETNAM LD9 [6-(PHENYLAMINO)-1-BENZOFURAN-3-YL]ACETIC ACID HETNAM CU COPPER (II) ION FORMUL 3 LD9 C16 H13 N O3 FORMUL 4 CU CU 2+ FORMUL 5 HOH *267(H2 O) HELIX 1 AA1 CYS A 30 VAL A 39 1 10 HELIX 2 AA2 HIS A 41 LEU A 50 1 10 HELIX 3 AA3 GLY A 65 GLY A 83 1 19 HELIX 4 AA4 VAL A 84 LYS A 98 1 15 HELIX 5 AA5 SER A 104 ALA A 115 1 12 HELIX 6 AA6 LYS A 118 ASN A 127 1 10 HELIX 7 AA7 SER A 128 VAL A 145 1 18 HELIX 8 AA8 PRO A 163 MET A 166 5 4 HELIX 9 AA9 ASN A 170 GLU A 187 1 18 HELIX 10 AB1 CYS B 30 VAL B 39 1 10 HELIX 11 AB2 HIS B 41 LEU B 50 1 10 HELIX 12 AB3 GLY B 65 GLY B 83 1 19 HELIX 13 AB4 VAL B 84 LYS B 98 1 15 HELIX 14 AB5 SER B 104 ALA B 115 1 12 HELIX 15 AB6 LYS B 118 ASN B 127 1 10 HELIX 16 AB7 SER B 128 VAL B 145 1 18 HELIX 17 AB8 PRO B 163 MET B 166 5 4 HELIX 18 AB9 ASN B 170 LYS B 188 1 19 SHEET 1 AA1 5 TYR A 9 THR A 11 0 SHEET 2 AA1 5 TYR A 159 LEU A 161 -1 O GLN A 160 N THR A 10 SHEET 3 AA1 5 ALA A 152 VAL A 155 -1 N MET A 153 O LEU A 161 SHEET 4 AA1 5 VAL A 22 PHE A 26 -1 N PHE A 25 O ALA A 152 SHEET 5 AA1 5 MET A 56 HIS A 60 1 O THR A 57 N VAL A 22 SHEET 1 AA2 5 TYR B 9 THR B 11 0 SHEET 2 AA2 5 TYR B 159 LEU B 161 -1 O GLN B 160 N THR B 10 SHEET 3 AA2 5 ALA B 152 VAL B 155 -1 N MET B 153 O LEU B 161 SHEET 4 AA2 5 VAL B 22 PHE B 26 -1 N PHE B 25 O ALA B 152 SHEET 5 AA2 5 MET B 56 HIS B 60 1 O THR B 57 N GLU B 24 SSBOND 1 CYS A 30 CYS A 33 1555 1555 2.13 SSBOND 2 CYS B 30 CYS B 33 1555 1555 2.04 LINK N ALA B 1 CU CU B 201 1555 1555 2.29 LINK O ALA B 1 CU CU B 201 1555 1555 2.03 LINK OE1 GLU B 4 CU CU B 201 1555 1555 2.11 LINK OD1 ASP B 44 CU CU B 201 1555 4546 2.37 LINK OD2 ASP B 44 CU CU B 201 1555 4546 2.35 LINK CU CU B 201 O HOH B 395 1555 4556 2.43 CISPEP 1 VAL A 150 PRO A 151 0 1.33 CISPEP 2 VAL B 150 PRO B 151 0 -2.82 SITE 1 AC1 6 HIS A 32 PHE A 36 PRO A 163 THR A 168 SITE 2 AC1 6 MET A 171 GLY B 65 SITE 1 AC2 4 ALA B 1 GLU B 4 ASP B 44 HOH B 395 CRYST1 117.720 64.070 74.730 90.00 125.53 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008495 0.000000 0.006066 0.00000 SCALE2 0.000000 0.015608 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016443 0.00000