HEADER ISOMERASE 01-JUL-19 6PMH TITLE STRUCTURE OF EPIMERASE MTH375 FROM THE THERMOPHILIC PSEUDOMUREIN- TITLE 2 CONTAINING METHANOGEN METHANOTHERMOBACTER THERMAUTOTROPHICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-GLUCOSE 4-EPIMERASE RELATED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOTHERMOBACTER THERMAUTOTROPHICUS (STRAIN SOURCE 3 ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / DELTA H); SOURCE 4 ORGANISM_TAXID: 187420; SOURCE 5 STRAIN: ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / DELTA H; SOURCE 6 GENE: MTH_375; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PSEUDOMUREIN, UDP-N-ACETYLGLUCOSAMINE, EPIMERASE, CELL WALL, KEYWDS 2 METHANOTHERMOBACTER, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.CARBONE,L.R.SCHOFIELD,A.J.SUTHERLAND-SMITH,R.S.RONIMUS REVDAT 3 27-DEC-23 6PMH 1 TITLE REMARK REVDAT 2 11-OCT-23 6PMH 1 REMARK REVDAT 1 08-JUL-20 6PMH 0 JRNL AUTH V.CARBONE,L.R.SCHOFIELD,A.J.SUTHERLAND-SMITH,R.S.RONIMUS JRNL TITL STRUCTURE OF A UDP-GALE 4-EPIMERASE (MTH375) FROM THE JRNL TITL 2 THERMOPHILIC PSEUDOMUREIN-CONTAINING METHANOGEN JRNL TITL 3 METHANOTHERMOBACTER THERMAUTOTROPHICUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 25527 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1380 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1866 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.1880 REMARK 3 BIN FREE R VALUE SET COUNT : 106 REMARK 3 BIN FREE R VALUE : 0.2530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2652 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 67 REMARK 3 SOLVENT ATOMS : 262 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.79000 REMARK 3 B22 (A**2) : 0.79000 REMARK 3 B33 (A**2) : -2.58000 REMARK 3 B12 (A**2) : 0.40000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.165 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.144 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.097 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2849 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2626 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3877 ; 1.607 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6031 ; 0.986 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 342 ; 6.513 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 147 ;38.081 ;23.810 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 460 ;15.335 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;20.770 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 409 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3253 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 695 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6PMH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1000242739. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.911700 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26918 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 48.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : 0.17600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.30 REMARK 200 R MERGE FOR SHELL (I) : 0.76300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.1 REMARK 200 STARTING MODEL: 2PZJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 M AMMONIUM DIHYDROGEN PHOSPHATE, REMARK 280 0.1 M TRI-SODIUM CITRATE, SILVER BULLETS BIO CONDITION H9, PH REMARK 280 5.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 56.90750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 32.85556 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 79.95767 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 56.90750 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 32.85556 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 79.95767 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 56.90750 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 32.85556 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 79.95767 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 56.90750 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 32.85556 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 79.95767 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 56.90750 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 32.85556 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 79.95767 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 56.90750 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 32.85556 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 79.95767 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 65.71112 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 159.91533 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 65.71112 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 159.91533 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 65.71112 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 159.91533 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 65.71112 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 159.91533 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 65.71112 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 159.91533 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 65.71112 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 159.91533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -89.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 56.90750 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 32.85556 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 559.70367 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 639 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 681 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -35 REMARK 465 ARG A -34 REMARK 465 GLY A -33 REMARK 465 SER A -32 REMARK 465 HIS A -31 REMARK 465 HIS A -30 REMARK 465 HIS A -29 REMARK 465 HIS A -28 REMARK 465 HIS A -27 REMARK 465 HIS A -26 REMARK 465 GLY A -25 REMARK 465 MET A -24 REMARK 465 ALA A -23 REMARK 465 SER A -22 REMARK 465 MET A -21 REMARK 465 THR A -20 REMARK 465 GLY A -19 REMARK 465 GLY A -18 REMARK 465 GLN A -17 REMARK 465 GLN A -16 REMARK 465 MET A -15 REMARK 465 GLY A -14 REMARK 465 ARG A -13 REMARK 465 ASP A -12 REMARK 465 LEU A -11 REMARK 465 TYR A -10 REMARK 465 ASP A -9 REMARK 465 ASP A -8 REMARK 465 ASP A -7 REMARK 465 ASP A -6 REMARK 465 LYS A -5 REMARK 465 ASP A -4 REMARK 465 HIS A -3 REMARK 465 PRO A -2 REMARK 465 PHE A -1 REMARK 465 THR A 0 REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 78 66.77 60.24 REMARK 500 ALA A 90 -112.49 -148.03 REMARK 500 SER A 128 -168.90 -79.92 REMARK 500 ASN A 184 77.05 19.27 REMARK 500 GLU A 331 64.29 -102.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UDP A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP A 407 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6PNL RELATED DB: PDB DBREF 6PMH A 1 332 UNP O26475 O26475_METTH 1 332 SEQADV 6PMH MET A -35 UNP O26475 INITIATING METHIONINE SEQADV 6PMH ARG A -34 UNP O26475 EXPRESSION TAG SEQADV 6PMH GLY A -33 UNP O26475 EXPRESSION TAG SEQADV 6PMH SER A -32 UNP O26475 EXPRESSION TAG SEQADV 6PMH HIS A -31 UNP O26475 EXPRESSION TAG SEQADV 6PMH HIS A -30 UNP O26475 EXPRESSION TAG SEQADV 6PMH HIS A -29 UNP O26475 EXPRESSION TAG SEQADV 6PMH HIS A -28 UNP O26475 EXPRESSION TAG SEQADV 6PMH HIS A -27 UNP O26475 EXPRESSION TAG SEQADV 6PMH HIS A -26 UNP O26475 EXPRESSION TAG SEQADV 6PMH GLY A -25 UNP O26475 EXPRESSION TAG SEQADV 6PMH MET A -24 UNP O26475 EXPRESSION TAG SEQADV 6PMH ALA A -23 UNP O26475 EXPRESSION TAG SEQADV 6PMH SER A -22 UNP O26475 EXPRESSION TAG SEQADV 6PMH MET A -21 UNP O26475 EXPRESSION TAG SEQADV 6PMH THR A -20 UNP O26475 EXPRESSION TAG SEQADV 6PMH GLY A -19 UNP O26475 EXPRESSION TAG SEQADV 6PMH GLY A -18 UNP O26475 EXPRESSION TAG SEQADV 6PMH GLN A -17 UNP O26475 EXPRESSION TAG SEQADV 6PMH GLN A -16 UNP O26475 EXPRESSION TAG SEQADV 6PMH MET A -15 UNP O26475 EXPRESSION TAG SEQADV 6PMH GLY A -14 UNP O26475 EXPRESSION TAG SEQADV 6PMH ARG A -13 UNP O26475 EXPRESSION TAG SEQADV 6PMH ASP A -12 UNP O26475 EXPRESSION TAG SEQADV 6PMH LEU A -11 UNP O26475 EXPRESSION TAG SEQADV 6PMH TYR A -10 UNP O26475 EXPRESSION TAG SEQADV 6PMH ASP A -9 UNP O26475 EXPRESSION TAG SEQADV 6PMH ASP A -8 UNP O26475 EXPRESSION TAG SEQADV 6PMH ASP A -7 UNP O26475 EXPRESSION TAG SEQADV 6PMH ASP A -6 UNP O26475 EXPRESSION TAG SEQADV 6PMH LYS A -5 UNP O26475 EXPRESSION TAG SEQADV 6PMH ASP A -4 UNP O26475 EXPRESSION TAG SEQADV 6PMH HIS A -3 UNP O26475 EXPRESSION TAG SEQADV 6PMH PRO A -2 UNP O26475 EXPRESSION TAG SEQADV 6PMH PHE A -1 UNP O26475 EXPRESSION TAG SEQADV 6PMH THR A 0 UNP O26475 EXPRESSION TAG SEQRES 1 A 368 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY MET ALA SEQRES 2 A 368 SER MET THR GLY GLY GLN GLN MET GLY ARG ASP LEU TYR SEQRES 3 A 368 ASP ASP ASP ASP LYS ASP HIS PRO PHE THR MET ILE MET SEQRES 4 A 368 ASP GLU PHE ARG ALA TYR ASP GLY LYS CYS VAL LEU VAL SEQRES 5 A 368 THR GLY GLY ALA GLY CYS VAL GLY SER ASN LEU THR GLY SEQRES 6 A 368 ASN LEU ALA LYS ALA GLY ALA ASN VAL ILE ILE LEU ASP SEQRES 7 A 368 ASN LEU SER SER SER TYR GLU TRP ASN ILE PRO GLU TYR SEQRES 8 A 368 GLU ASN ILE GLU PHE VAL LYS GLY ASP ILE LEU ASP ASP SEQRES 9 A 368 GLU VAL LEU LYS ARG VAL PHE LYS GLU ARG PRO ASP TYR SEQRES 10 A 368 VAL PHE HIS LEU ALA ALA HIS PHE ALA ASN GLN ASN SER SEQRES 11 A 368 VAL ASP ASN PRO GLU LYS ASP LEU LEU VAL ASN GLY LEU SEQRES 12 A 368 GLY ILE LEU LYS VAL LEU GLU TYR ALA GLN LEU VAL GLY SEQRES 13 A 368 VAL GLU ARG PHE VAL TYR SER SER SER GLY CME GLY VAL SEQRES 14 A 368 TYR GLY LEU ASP SER LYS ILE PRO PHE GLU GLU HIS ASP SEQRES 15 A 368 ILE SER ILE SER LEU HIS THR PRO TYR GLN VAL THR LYS SEQRES 16 A 368 LEU LEU GLY GLU LEU TYR THR ASN TYR PHE HIS ASN LEU SEQRES 17 A 368 TYR GLU MET PRO ILE VAL ASN ALA ARG PHE PHE ASN VAL SEQRES 18 A 368 PHE GLY PRO GLY GLU VAL PRO GLY LYS TYR ARG ASN VAL SEQRES 19 A 368 ILE PRO ASN PHE PHE TYR TRP ALA MET ASN GLN GLN PRO SEQRES 20 A 368 LEU PRO ILE THR GLY ASP GLY SER GLU THR ARG ASP TRP SEQRES 21 A 368 THR PHE VAL GLU ASP ILE VAL ARG GLY LEU MET ALA MET SEQRES 22 A 368 GLY VAL ARG ARG GLU ALA ILE GLY GLU ALA ILE ASN LEU SEQRES 23 A 368 GLY SER GLY THR GLU HIS GLN VAL ILE GLU MET ALA GLY SEQRES 24 A 368 ILE ILE ASN GLU LEU THR GLU ASN PRO ALA GLY VAL VAL SEQRES 25 A 368 TYR ARG PRO ARG ARG ASP TRP ASP ALA LYS THR ARG LEU SEQRES 26 A 368 LEU SER SER ILE ASP LYS ALA ARG ARG LEU LEU ASP TYR SEQRES 27 A 368 GLU PRO GLN VAL SER PHE ARG GLU GLY LEU GLU ARG THR SEQRES 28 A 368 HIS ARG TRP PHE THR GLU ASN TRP GLU LEU ILE ARG LYS SEQRES 29 A 368 SER ALA GLU PHE MODRES 6PMH CME A 131 CYS MODIFIED RESIDUE HET CME A 131 10 HET PO4 A 401 5 HET GOL A 402 6 HET GOL A 403 6 HET CL A 404 1 HET CL A 405 1 HET UDP A 406 25 HET AMP A 407 23 HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM AMP ADENOSINE MONOPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CME C5 H11 N O3 S2 FORMUL 2 PO4 O4 P 3- FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 CL 2(CL 1-) FORMUL 7 UDP C9 H14 N2 O12 P2 FORMUL 8 AMP C10 H14 N5 O7 P FORMUL 9 HOH *262(H2 O) HELIX 1 AA1 ASP A 4 ASP A 10 5 7 HELIX 2 AA2 GLY A 21 ALA A 34 1 14 HELIX 3 AA3 TYR A 48 ILE A 52 5 5 HELIX 4 AA4 ASP A 67 LYS A 76 1 10 HELIX 5 AA5 ALA A 90 ASN A 97 1 8 HELIX 6 AA6 ASN A 97 GLY A 106 1 10 HELIX 7 AA7 GLY A 106 GLY A 120 1 15 HELIX 8 AA8 THR A 153 GLU A 174 1 22 HELIX 9 AA9 ASN A 197 ASN A 208 1 12 HELIX 10 AB1 VAL A 227 ARG A 240 1 14 HELIX 11 AB2 ARG A 241 ILE A 244 5 4 HELIX 12 AB3 VAL A 258 THR A 269 1 12 HELIX 13 AB4 ILE A 293 ASP A 301 1 9 HELIX 14 AB5 SER A 307 ASN A 322 1 16 HELIX 15 AB6 ASN A 322 ALA A 330 1 9 SHEET 1 AA1 7 ILE A 58 LYS A 62 0 SHEET 2 AA1 7 ASN A 37 ASP A 42 1 N VAL A 38 O GLU A 59 SHEET 3 AA1 7 CYS A 13 THR A 17 1 N VAL A 14 O ILE A 39 SHEET 4 AA1 7 TYR A 81 HIS A 84 1 O PHE A 83 N LEU A 15 SHEET 5 AA1 7 ARG A 123 SER A 129 1 O VAL A 125 N HIS A 84 SHEET 6 AA1 7 ILE A 177 PHE A 182 1 O VAL A 178 N TYR A 126 SHEET 7 AA1 7 ALA A 247 LEU A 250 1 O LEU A 250 N ARG A 181 SHEET 1 AA2 2 VAL A 185 PHE A 186 0 SHEET 2 AA2 2 THR A 225 PHE A 226 1 O THR A 225 N PHE A 186 SHEET 1 AA3 2 LEU A 212 THR A 215 0 SHEET 2 AA3 2 VAL A 275 ARG A 278 1 O VAL A 276 N ILE A 214 SHEET 1 AA4 2 THR A 221 ARG A 222 0 SHEET 2 AA4 2 HIS A 256 GLN A 257 -1 O HIS A 256 N ARG A 222 LINK C GLY A 130 N CME A 131 1555 1555 1.33 LINK C CME A 131 N GLY A 132 1555 1555 1.33 CISPEP 1 PHE A 89 ALA A 90 0 -0.26 CISPEP 2 ILE A 140 PRO A 141 0 -6.10 SITE 1 AC1 10 ASN A 43 SER A 45 HIS A 88 VAL A 104 SITE 2 AC1 10 AMP A 407 HOH A 510 HOH A 541 HOH A 635 SITE 3 AC1 10 HOH A 637 HOH A 662 SITE 1 AC2 9 ALA A 90 ASN A 91 GLN A 92 ASN A 93 SITE 2 AC2 9 TYR A 195 TRP A 283 GOL A 403 UDP A 406 SITE 3 AC2 9 HOH A 501 SITE 1 AC3 8 ASN A 91 SER A 129 TYR A 155 ASN A 197 SITE 2 AC3 8 GOL A 402 UDP A 406 HOH A 530 HOH A 544 SITE 1 AC4 2 SER A 148 HOH A 708 SITE 1 AC5 2 ARG A 241 GLU A 242 SITE 1 AC6 22 ASN A 91 CME A 131 ASN A 184 ASN A 197 SITE 2 AC6 22 VAL A 198 PHE A 202 PRO A 213 ILE A 214 SITE 3 AC6 22 THR A 215 ARG A 222 VAL A 258 ARG A 281 SITE 4 AC6 22 ASP A 284 GOL A 402 GOL A 403 HOH A 516 SITE 5 AC6 22 HOH A 523 HOH A 552 HOH A 558 HOH A 564 SITE 6 AC6 22 HOH A 592 HOH A 608 SITE 1 AC7 23 GLY A 18 GLY A 21 ASP A 42 ASN A 43 SITE 2 AC7 23 LEU A 44 SER A 45 SER A 46 SER A 47 SITE 3 AC7 23 GLY A 63 ASP A 64 ILE A 65 LEU A 85 SITE 4 AC7 23 ALA A 86 ALA A 87 PHE A 89 VAL A 104 SITE 5 AC7 23 ARG A 196 PO4 A 401 HOH A 517 HOH A 571 SITE 6 AC7 23 HOH A 596 HOH A 649 HOH A 668 CRYST1 113.815 113.815 239.873 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008786 0.005073 0.000000 0.00000 SCALE2 0.000000 0.010145 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004169 0.00000