HEADER TRANSFERASE 02-JUL-19 6PMU TITLE STRUCTURAL CHARACTERIZATION OF BETA CYANOALANINE SYNTHASE FROM TITLE 2 TETRANYCHUS URTICAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-CYANOALANINE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TETRANYCHUS URTICAE; SOURCE 3 ORGANISM_COMMON: TWO-SPOTTED SPIDER MITE; SOURCE 4 ORGANISM_TAXID: 32264; SOURCE 5 GENE: 107363798; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG35 KEYWDS BETA CYANOALANINE SYNTHASE, PLP, TWO-SPOTTED SPIDER MITE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.DANESHIAN,C.SCHLACHTER,W.DERMAUW,N.WYBOUW,T.VAN LEEUWEN,M.CHRUSZCZ REVDAT 2 11-OCT-23 6PMU 1 REMARK REVDAT 1 08-JUL-20 6PMU 0 JRNL AUTH L.DANESHIAN,C.SCHLACHTER,W.DERMAUW,N.WYBOUW,T.VAN LEEUWEN, JRNL AUTH 2 M.CHRUSZCZ JRNL TITL STRUCTURAL CHARACTERIZATION OF BETA CYANOALANINE SYNTHASE JRNL TITL 2 FROM TETRANYCHUS URTICAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0253 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.6 REMARK 3 NUMBER OF REFLECTIONS : 29271 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1488 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2381 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.1830 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.2190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4204 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 272 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.27000 REMARK 3 B22 (A**2) : -1.27000 REMARK 3 B33 (A**2) : 2.55000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.254 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.195 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4316 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4004 ; 0.036 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5854 ; 1.515 ; 1.643 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9314 ; 2.347 ; 1.574 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 561 ; 6.333 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 191 ;36.331 ;23.613 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 717 ;13.801 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;20.331 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 583 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4852 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 826 ; 0.010 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 5 317 B 5 317 8419 0.100 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 108 REMARK 3 ORIGIN FOR THE GROUP (A): -23.0290 25.0990 -7.8750 REMARK 3 T TENSOR REMARK 3 T11: 0.1103 T22: 0.0960 REMARK 3 T33: 0.0313 T12: -0.0093 REMARK 3 T13: 0.0047 T23: -0.0239 REMARK 3 L TENSOR REMARK 3 L11: 0.1506 L22: 0.5016 REMARK 3 L33: 0.9721 L12: -0.1030 REMARK 3 L13: -0.1734 L23: 0.1643 REMARK 3 S TENSOR REMARK 3 S11: -0.0254 S12: 0.0059 S13: -0.0181 REMARK 3 S21: -0.1389 S22: -0.0796 S23: 0.0396 REMARK 3 S31: -0.1026 S32: -0.0135 S33: 0.1049 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 109 A 167 REMARK 3 ORIGIN FOR THE GROUP (A): -11.2290 16.4600 -18.9910 REMARK 3 T TENSOR REMARK 3 T11: 0.1445 T22: 0.1067 REMARK 3 T33: 0.0647 T12: -0.0032 REMARK 3 T13: 0.0530 T23: 0.0298 REMARK 3 L TENSOR REMARK 3 L11: 1.2206 L22: 0.4855 REMARK 3 L33: 0.6333 L12: 0.3725 REMARK 3 L13: -0.2629 L23: 0.3637 REMARK 3 S TENSOR REMARK 3 S11: -0.1268 S12: -0.0443 S13: -0.1422 REMARK 3 S21: -0.0834 S22: 0.0241 S23: -0.0213 REMARK 3 S31: 0.0070 S32: 0.0899 S33: 0.1028 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 168 A 318 REMARK 3 ORIGIN FOR THE GROUP (A): -14.4590 39.5430 -2.5560 REMARK 3 T TENSOR REMARK 3 T11: 0.0753 T22: 0.0675 REMARK 3 T33: 0.0182 T12: -0.0363 REMARK 3 T13: 0.0249 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 1.5390 L22: 1.4909 REMARK 3 L33: 0.9125 L12: -0.2412 REMARK 3 L13: 0.1901 L23: -0.0976 REMARK 3 S TENSOR REMARK 3 S11: 0.0368 S12: 0.0282 S13: 0.1091 REMARK 3 S21: -0.1369 S22: -0.0464 S23: -0.1195 REMARK 3 S31: -0.1152 S32: 0.0673 S33: 0.0095 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 90 REMARK 3 ORIGIN FOR THE GROUP (A): -25.9220 22.8280 13.0090 REMARK 3 T TENSOR REMARK 3 T11: 0.0675 T22: 0.1153 REMARK 3 T33: 0.0373 T12: -0.0320 REMARK 3 T13: 0.0232 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 0.8914 L22: 0.5822 REMARK 3 L33: 0.7892 L12: 0.5040 REMARK 3 L13: 0.3603 L23: 0.1485 REMARK 3 S TENSOR REMARK 3 S11: 0.0746 S12: -0.1185 S13: -0.0704 REMARK 3 S21: 0.1017 S22: -0.0470 S23: 0.0492 REMARK 3 S31: 0.0237 S32: -0.0435 S33: -0.0276 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 91 B 159 REMARK 3 ORIGIN FOR THE GROUP (A): -7.1880 15.4730 21.4530 REMARK 3 T TENSOR REMARK 3 T11: 0.1039 T22: 0.0983 REMARK 3 T33: 0.1428 T12: -0.0224 REMARK 3 T13: -0.0141 T23: 0.0664 REMARK 3 L TENSOR REMARK 3 L11: 3.6493 L22: 2.5975 REMARK 3 L33: 3.2689 L12: -1.2430 REMARK 3 L13: 0.7197 L23: -0.9332 REMARK 3 S TENSOR REMARK 3 S11: 0.1054 S12: -0.1115 S13: -0.6543 REMARK 3 S21: 0.0374 S22: -0.1692 S23: 0.1569 REMARK 3 S31: 0.4316 S32: 0.2330 S33: 0.0637 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 160 B 319 REMARK 3 ORIGIN FOR THE GROUP (A): -32.9930 9.2650 9.4250 REMARK 3 T TENSOR REMARK 3 T11: 0.0768 T22: 0.0652 REMARK 3 T33: 0.0448 T12: -0.0555 REMARK 3 T13: 0.0069 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 1.2583 L22: 1.9881 REMARK 3 L33: 1.7073 L12: 0.8754 REMARK 3 L13: 0.3877 L23: 0.7792 REMARK 3 S TENSOR REMARK 3 S11: 0.1445 S12: -0.2120 S13: -0.1654 REMARK 3 S21: 0.1956 S22: -0.1929 S23: 0.0289 REMARK 3 S31: 0.3203 S32: -0.1717 S33: 0.0483 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6PMU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1000242754. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30969 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.6 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : 0.09800 REMARK 200 FOR THE DATA SET : 39.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.42800 REMARK 200 R SYM FOR SHELL (I) : 0.42800 REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3VBE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM MALONATE PH 6.0, 12% PEG REMARK 280 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.71300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.69350 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.69350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 103.06950 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.69350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.69350 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.35650 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.69350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.69350 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 103.06950 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.69350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.69350 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 34.35650 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 68.71300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLU A 3 REMARK 465 SER A 4 REMARK 465 GLY A 222 REMARK 465 CYS A 223 REMARK 465 GLN A 224 REMARK 465 PRO A 225 REMARK 465 ILE A 226 REMARK 465 ALA A 227 REMARK 465 GLY A 228 REMARK 465 CYS A 229 REMARK 465 THR A 230 REMARK 465 ILE A 231 REMARK 465 THR A 232 REMARK 465 LYS A 233 REMARK 465 PRO A 234 REMARK 465 LEU A 235 REMARK 465 HIS A 236 REMARK 465 LEU A 237 REMARK 465 LEU A 238 REMARK 465 GLN A 239 REMARK 465 GLY A 240 REMARK 465 SER A 241 REMARK 465 GLY A 242 REMARK 465 TYR A 243 REMARK 465 GLY A 244 REMARK 465 CYS A 245 REMARK 465 VAL A 246 REMARK 465 PRO A 247 REMARK 465 THR A 248 REMARK 465 LEU A 249 REMARK 465 PHE A 250 REMARK 465 ASP A 251 REMARK 465 LYS A 252 REMARK 465 LYS A 253 REMARK 465 VAL A 254 REMARK 465 TYR A 255 REMARK 465 ASN A 256 REMARK 465 PRO A 319 REMARK 465 GLU A 320 REMARK 465 GLU B 221 REMARK 465 GLY B 222 REMARK 465 CYS B 223 REMARK 465 GLN B 224 REMARK 465 PRO B 225 REMARK 465 ILE B 226 REMARK 465 ALA B 227 REMARK 465 GLY B 228 REMARK 465 CYS B 229 REMARK 465 THR B 230 REMARK 465 ILE B 231 REMARK 465 THR B 232 REMARK 465 LYS B 233 REMARK 465 PRO B 234 REMARK 465 LEU B 235 REMARK 465 HIS B 236 REMARK 465 LEU B 237 REMARK 465 LEU B 238 REMARK 465 GLN B 239 REMARK 465 GLY B 240 REMARK 465 SER B 241 REMARK 465 GLY B 242 REMARK 465 TYR B 243 REMARK 465 GLY B 244 REMARK 465 CYS B 245 REMARK 465 VAL B 246 REMARK 465 PRO B 247 REMARK 465 THR B 248 REMARK 465 LEU B 249 REMARK 465 PHE B 250 REMARK 465 ASP B 251 REMARK 465 LYS B 252 REMARK 465 LYS B 253 REMARK 465 VAL B 254 REMARK 465 TYR B 255 REMARK 465 ASN B 256 REMARK 465 GLU B 320 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 130 CG CD CE NZ REMARK 470 GLU B 3 CG CD OE1 OE2 REMARK 470 LYS B 130 CG CD CE NZ REMARK 470 GLU B 151 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 28 56.59 -94.63 REMARK 500 THR A 173 -72.03 -123.20 REMARK 500 THR B 173 -69.24 -123.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PLP B 401 and LYS B REMARK 800 52 DBREF 6PMU A 1 320 UNP T1KF23 T1KF23_TETUR 1 320 DBREF 6PMU B 1 320 UNP T1KF23 T1KF23_TETUR 1 320 SEQADV 6PMU SER A 0 UNP T1KF23 EXPRESSION TAG SEQADV 6PMU SER B 0 UNP T1KF23 EXPRESSION TAG SEQRES 1 A 321 SER MET THR GLU SER THR VAL ASP ARG ILE ASN GLY ILE SEQRES 2 A 321 THR PRO SER ALA LEU ASP LEU ILE GLY ASN THR PRO LEU SEQRES 3 A 321 ILE ALA LEU ASP ARG LEU TRP PRO GLY PRO GLY ARG LEU SEQRES 4 A 321 LEU ALA LYS CYS GLU PHE LEU ASN PRO THR ALA SER LEU SEQRES 5 A 321 LYS ASP ARG SER SER TYR TYR MET ILE ALA LYS ALA LYS SEQRES 6 A 321 GLU SER GLY GLN LEU LYS ASP GLY GLU SER VAL ILE GLU SEQRES 7 A 321 VAL THR SER GLY ASN GLN GLY GLY GLY ILE ALA CYS VAL SEQRES 8 A 321 THR ALA VAL MET GLY HIS PRO PHE THR VAL THR MET SER SEQRES 9 A 321 LYS GLY ASN SER PRO GLN ARG ALA ILE MET MET ASN ALA SEQRES 10 A 321 LEU GLY ALA ASN VAL ILE LEU VAL ASP GLN VAL THR GLY SEQRES 11 A 321 LYS PRO GLY ASN VAL THR ALA ASP ASP VAL ALA ALA ALA SEQRES 12 A 321 GLU GLU THR ALA MET LYS ILE ARG GLU GLU THR ASN ALA SEQRES 13 A 321 TYR TYR VAL ASP GLN PHE ASN ASN PRO THR ASN CYS LEU SEQRES 14 A 321 ALA HIS TYR GLU THR THR GLY PRO GLU ILE TRP ARG GLN SEQRES 15 A 321 THR ASN GLY ARG ILE ASP ALA PHE LEU VAL GLY CYS GLY SEQRES 16 A 321 THR GLY GLY CYS PHE VAL GLY THR SER LYS PHE LEU LYS SEQRES 17 A 321 GLU LYS ASN PRO ASN VAL ARG CYS PHE VAL VAL GLU PRO SEQRES 18 A 321 GLU GLY CYS GLN PRO ILE ALA GLY CYS THR ILE THR LYS SEQRES 19 A 321 PRO LEU HIS LEU LEU GLN GLY SER GLY TYR GLY CYS VAL SEQRES 20 A 321 PRO THR LEU PHE ASP LYS LYS VAL TYR ASN ASP SER ILE SEQRES 21 A 321 SER VAL SER ASP GLU GLU ALA ILE GLU TYR ARG LYS LEU SEQRES 22 A 321 LEU GLY GLN LYS GLU GLY LEU PHE CYS GLY PHE THR THR SEQRES 23 A 321 GLY GLY ASN ILE ALA ALA ALA ILE LYS LEU LEU LYS SER SEQRES 24 A 321 GLY GLN LEU PRO LYS ASP ALA TRP VAL VAL THR ILE LEU SEQRES 25 A 321 CYS ASP SER GLY LEU LYS TYR PRO GLU SEQRES 1 B 321 SER MET THR GLU SER THR VAL ASP ARG ILE ASN GLY ILE SEQRES 2 B 321 THR PRO SER ALA LEU ASP LEU ILE GLY ASN THR PRO LEU SEQRES 3 B 321 ILE ALA LEU ASP ARG LEU TRP PRO GLY PRO GLY ARG LEU SEQRES 4 B 321 LEU ALA LYS CYS GLU PHE LEU ASN PRO THR ALA SER LEU SEQRES 5 B 321 LYS ASP ARG SER SER TYR TYR MET ILE ALA LYS ALA LYS SEQRES 6 B 321 GLU SER GLY GLN LEU LYS ASP GLY GLU SER VAL ILE GLU SEQRES 7 B 321 VAL THR SER GLY ASN GLN GLY GLY GLY ILE ALA CYS VAL SEQRES 8 B 321 THR ALA VAL MET GLY HIS PRO PHE THR VAL THR MET SER SEQRES 9 B 321 LYS GLY ASN SER PRO GLN ARG ALA ILE MET MET ASN ALA SEQRES 10 B 321 LEU GLY ALA ASN VAL ILE LEU VAL ASP GLN VAL THR GLY SEQRES 11 B 321 LYS PRO GLY ASN VAL THR ALA ASP ASP VAL ALA ALA ALA SEQRES 12 B 321 GLU GLU THR ALA MET LYS ILE ARG GLU GLU THR ASN ALA SEQRES 13 B 321 TYR TYR VAL ASP GLN PHE ASN ASN PRO THR ASN CYS LEU SEQRES 14 B 321 ALA HIS TYR GLU THR THR GLY PRO GLU ILE TRP ARG GLN SEQRES 15 B 321 THR ASN GLY ARG ILE ASP ALA PHE LEU VAL GLY CYS GLY SEQRES 16 B 321 THR GLY GLY CYS PHE VAL GLY THR SER LYS PHE LEU LYS SEQRES 17 B 321 GLU LYS ASN PRO ASN VAL ARG CYS PHE VAL VAL GLU PRO SEQRES 18 B 321 GLU GLY CYS GLN PRO ILE ALA GLY CYS THR ILE THR LYS SEQRES 19 B 321 PRO LEU HIS LEU LEU GLN GLY SER GLY TYR GLY CYS VAL SEQRES 20 B 321 PRO THR LEU PHE ASP LYS LYS VAL TYR ASN ASP SER ILE SEQRES 21 B 321 SER VAL SER ASP GLU GLU ALA ILE GLU TYR ARG LYS LEU SEQRES 22 B 321 LEU GLY GLN LYS GLU GLY LEU PHE CYS GLY PHE THR THR SEQRES 23 B 321 GLY GLY ASN ILE ALA ALA ALA ILE LYS LEU LEU LYS SER SEQRES 24 B 321 GLY GLN LEU PRO LYS ASP ALA TRP VAL VAL THR ILE LEU SEQRES 25 B 321 CYS ASP SER GLY LEU LYS TYR PRO GLU HET PLP A 401 15 HET PLP B 401 15 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 3 PLP 2(C8 H10 N O6 P) FORMUL 5 HOH *272(H2 O) HELIX 1 AA1 SER A 15 ILE A 20 5 6 HELIX 2 AA2 PHE A 44 ASN A 46 5 3 HELIX 3 AA3 LEU A 51 SER A 66 1 16 HELIX 4 AA4 GLY A 81 GLY A 95 1 15 HELIX 5 AA5 SER A 107 ARG A 110 5 4 HELIX 6 AA6 ALA A 111 LEU A 117 1 7 HELIX 7 AA7 THR A 135 ASN A 154 1 20 HELIX 8 AA8 PRO A 164 THR A 173 1 10 HELIX 9 AA9 THR A 173 THR A 182 1 10 HELIX 10 AB1 GLY A 196 ASN A 210 1 15 HELIX 11 AB2 SER A 262 GLY A 278 1 17 HELIX 12 AB3 GLY A 282 GLY A 299 1 18 HELIX 13 AB4 SER A 314 TYR A 318 5 5 HELIX 14 AB5 SER B 15 ILE B 20 5 6 HELIX 15 AB6 PHE B 44 ASN B 46 5 3 HELIX 16 AB7 LEU B 51 SER B 66 1 16 HELIX 17 AB8 GLY B 81 GLY B 95 1 15 HELIX 18 AB9 SER B 107 ARG B 110 5 4 HELIX 19 AC1 ALA B 111 LEU B 117 1 7 HELIX 20 AC2 THR B 135 ASN B 154 1 20 HELIX 21 AC3 ASP B 159 ASN B 163 5 5 HELIX 22 AC4 PRO B 164 THR B 173 1 10 HELIX 23 AC5 THR B 173 THR B 182 1 10 HELIX 24 AC6 GLY B 196 ASN B 210 1 15 HELIX 25 AC7 SER B 262 GLY B 278 1 17 HELIX 26 AC8 GLY B 282 GLY B 299 1 18 HELIX 27 AC9 SER B 314 TYR B 318 5 5 SHEET 1 AA1 7 ILE A 12 THR A 13 0 SHEET 2 AA1 7 LEU B 25 ALA B 27 1 O LEU B 25 N THR A 13 SHEET 3 AA1 7 ARG B 37 CYS B 42 -1 O ALA B 40 N ILE B 26 SHEET 4 AA1 7 TRP B 306 LEU B 311 1 O VAL B 307 N ARG B 37 SHEET 5 AA1 7 ALA B 188 GLY B 192 1 N ALA B 188 O VAL B 308 SHEET 6 AA1 7 ARG B 214 GLU B 219 1 O PHE B 216 N PHE B 189 SHEET 7 AA1 7 SER B 258 SER B 260 1 O ILE B 259 N VAL B 217 SHEET 1 AA2 7 SER A 258 VAL A 261 0 SHEET 2 AA2 7 ARG A 214 PRO A 220 1 N GLU A 219 O ILE A 259 SHEET 3 AA2 7 ALA A 188 GLY A 192 1 N PHE A 189 O PHE A 216 SHEET 4 AA2 7 TRP A 306 LEU A 311 1 O VAL A 308 N ALA A 188 SHEET 5 AA2 7 ARG A 37 CYS A 42 1 N ARG A 37 O VAL A 307 SHEET 6 AA2 7 LEU A 25 ALA A 27 -1 N ILE A 26 O ALA A 40 SHEET 7 AA2 7 ILE B 12 THR B 13 1 O THR B 13 N LEU A 25 SHEET 1 AA3 4 ASN A 120 VAL A 124 0 SHEET 2 AA3 4 PHE A 98 SER A 103 1 N VAL A 100 O ILE A 122 SHEET 3 AA3 4 VAL A 75 VAL A 78 1 N VAL A 75 O THR A 99 SHEET 4 AA3 4 TYR A 156 TYR A 157 1 O TYR A 156 N ILE A 76 SHEET 1 AA4 4 ASN B 120 VAL B 124 0 SHEET 2 AA4 4 PHE B 98 SER B 103 1 N VAL B 100 O ILE B 122 SHEET 3 AA4 4 VAL B 75 VAL B 78 1 N VAL B 75 O THR B 99 SHEET 4 AA4 4 TYR B 156 TYR B 157 1 O TYR B 156 N ILE B 76 LINK NZ LYS A 52 C4A PLP A 401 1555 1555 1.29 LINK NZ LYS B 52 C4A PLP B 401 1555 1555 1.25 CISPEP 1 GLY A 34 PRO A 35 0 -0.53 CISPEP 2 GLY B 34 PRO B 35 0 -1.26 SITE 1 AC1 14 LYS A 52 ASN A 82 CYS A 193 GLY A 194 SITE 2 AC1 14 THR A 195 GLY A 196 GLY A 197 CYS A 198 SITE 3 AC1 14 THR A 284 CYS A 312 ASP A 313 TYR A 318 SITE 4 AC1 14 HOH A 507 HOH A 585 SITE 1 AC2 19 SER B 50 LEU B 51 ASP B 53 ARG B 54 SITE 2 AC2 19 SER B 55 SER B 56 ASN B 82 GLN B 83 SITE 3 AC2 19 CYS B 193 GLY B 194 THR B 195 GLY B 196 SITE 4 AC2 19 GLY B 197 CYS B 198 THR B 284 CYS B 312 SITE 5 AC2 19 ASP B 313 HOH B 513 HOH B 568 CRYST1 91.387 91.387 137.426 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010942 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010942 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007277 0.00000