HEADER ALLERGEN 03-JUL-19 6PNY TITLE X-RAY STRUCTURE OF FLPP3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLPP3; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FRANCISELLA TULARENSIS SUBSP. TULARENSIS SOURCE 3 (STRAIN SCHU S4 / SCHU 4); SOURCE 4 ORGANISM_TAXID: 177416; SOURCE 5 STRAIN: SCHU S4 / SCHU 4; SOURCE 6 GENE: BZ14_1359; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VIRULENCE DETERMINANT, LIPOPROTEIN, ALLERGEN EXPDTA X-RAY DIFFRACTION AUTHOR J.D.ZOOK,M.SHEKHAR,D.T.HANSEN,C.CONRAD,T.D.GRANT,C.GUPTA,T.WHITE, AUTHOR 2 A.BARTY,S.BASU,Y.ZHAO,N.A.ZATSEPIN,A.ISHCHENKO,A.BATYUK,C.GATI,C.LI, AUTHOR 3 L.GALLI,J.COE,M.HUNTER,M.LIANG,U.WEIERSTALL,G.NELSON,D.JAMES, AUTHOR 4 B.STAUCH,F.CRACIUNESCU,D.THIFAULT,W.LIU,V.CHEREZOV,A.SINGHAROY, AUTHOR 5 P.FROMME REVDAT 4 11-OCT-23 6PNY 1 REMARK REVDAT 3 20-MAY-20 6PNY 1 JRNL REVDAT 2 18-MAR-20 6PNY 1 JRNL REVDAT 1 26-FEB-20 6PNY 0 JRNL AUTH J.ZOOK,M.SHEKHAR,D.HANSEN,C.CONRAD,T.GRANT,C.GUPTA,T.WHITE, JRNL AUTH 2 A.BARTY,S.BASU,Y.ZHAO,N.ZATSEPIN,A.ISHCHENKO,A.BATYUK, JRNL AUTH 3 C.GATI,C.LI,L.GALLI,J.COE,M.HUNTER,M.LIANG,U.WEIERSTALL, JRNL AUTH 4 G.NELSON,D.JAMES,B.STAUCH,F.CRACIUNESCU,D.THIFAULT,W.LIU, JRNL AUTH 5 V.CHEREZOV,A.SINGHAROY,P.FROMME JRNL TITL XFEL AND NMR STRUCTURES OF FRANCISELLA LIPOPROTEIN REVEAL JRNL TITL 2 CONFORMATIONAL SPACE OF DRUG TARGET AGAINST TULAREMIA. JRNL REF STRUCTURE V. 28 540 2020 JRNL REFN ISSN 0969-2126 JRNL PMID 32142641 JRNL DOI 10.1016/J.STR.2020.02.005 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 12490 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.770 REMARK 3 FREE R VALUE TEST SET COUNT : 596 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.0300 - 2.6200 1.00 3104 153 0.1835 0.2165 REMARK 3 2 2.6200 - 2.0800 1.00 2970 148 0.1855 0.2203 REMARK 3 3 2.0800 - 1.8200 1.00 2926 148 0.2114 0.2724 REMARK 3 4 1.8200 - 1.6500 1.00 2894 147 0.3211 0.3607 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.286 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.654 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 956 REMARK 3 ANGLE : 0.584 1307 REMARK 3 CHIRALITY : 0.046 146 REMARK 3 PLANARITY : 0.003 174 REMARK 3 DIHEDRAL : 2.139 782 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6PNY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1000242756. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 300 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : FREE ELECTRON LASER REMARK 200 BEAMLINE : CXI REMARK 200 X-RAY GENERATOR MODEL : SLAC LCLS BEAMLINE CXI REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.425 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : CS-PAD CXI-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : CRYSTFEL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16570 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 19.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 217.0 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MR-ROSETTA REMARK 200 STARTING MODEL: 2MU4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CHLORIDE, CALCIUM CHLORIDE, REMARK 280 SODIUM PHOSPHATE, BATCH MODE, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 14.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.05000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.95000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 34.05000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 14.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.95000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 201 O HOH A 307 2.09 REMARK 500 O HOH A 231 O HOH A 318 2.10 REMARK 500 N HIS A 4 O HOH A 201 2.15 REMARK 500 O HOH A 260 O HOH A 292 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 202 O HOH A 272 3655 1.98 REMARK 500 O HOH A 232 O HOH A 270 1455 2.09 REMARK 500 O HOH A 214 O HOH A 272 3655 2.13 REMARK 500 O HOH A 263 O HOH A 277 4455 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 71 107.80 -161.28 REMARK 500 ASN A 118 72.24 -100.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2MU4 RELATED DB: PDB REMARK 900 NMR STRUCTURE DBREF1 6PNY A 12 119 UNP A0A454XXY1_FRATT DBREF2 6PNY A A0A454XXY1 30 137 SEQADV 6PNY MET A 1 UNP A0A454XXY INITIATING METHIONINE SEQADV 6PNY HIS A 2 UNP A0A454XXY EXPRESSION TAG SEQADV 6PNY HIS A 3 UNP A0A454XXY EXPRESSION TAG SEQADV 6PNY HIS A 4 UNP A0A454XXY EXPRESSION TAG SEQADV 6PNY HIS A 5 UNP A0A454XXY EXPRESSION TAG SEQADV 6PNY HIS A 6 UNP A0A454XXY EXPRESSION TAG SEQADV 6PNY HIS A 7 UNP A0A454XXY EXPRESSION TAG SEQADV 6PNY ILE A 8 UNP A0A454XXY EXPRESSION TAG SEQADV 6PNY GLU A 9 UNP A0A454XXY EXPRESSION TAG SEQADV 6PNY GLY A 10 UNP A0A454XXY EXPRESSION TAG SEQADV 6PNY ARG A 11 UNP A0A454XXY EXPRESSION TAG SEQRES 1 A 119 MET HIS HIS HIS HIS HIS HIS ILE GLU GLY ARG GLN TYR SEQRES 2 A 119 LYS ASP GLY TYR TYR ILE THR THR LEU ASN TYR ASN PHE SEQRES 3 A 119 ASN THR VAL TYR ASN ALA THR LEU GLN ALA ILE GLN ASN SEQRES 4 A 119 GLY GLN THR PHE ASP TYR LYS SER ASN PRO TYR ASP ILE SEQRES 5 A 119 SER VAL ASN LYS ASN ASN GLY THR ASP ALA GLU ILE VAL SEQRES 6 A 119 SER ALA SER ASP SER ASP SER THR ASP SER LEU GLN VAL SEQRES 7 A 119 ALA MET LYS LYS LEU PRO ASN ASN ALA THR ARG ILE SER SEQRES 8 A 119 ILE LYS TYR GLY SER GLN GLY ASN SER ILE ARG SER SER SEQRES 9 A 119 ALA LEU ILE GLY ILE ILE GLU GLY ASN ILE ARG TYR ALA SEQRES 10 A 119 ASN THR FORMUL 2 HOH *118(H2 O) HELIX 1 AA1 ASN A 25 ASN A 39 1 15 HELIX 2 AA2 ASN A 99 TYR A 116 1 18 SHEET 1 AA1 6 GLN A 12 LYS A 14 0 SHEET 2 AA1 6 TYR A 17 LEU A 22 -1 O ILE A 19 N GLN A 12 SHEET 3 AA1 6 ALA A 87 TYR A 94 -1 O THR A 88 N LEU A 22 SHEET 4 AA1 6 ASP A 71 LEU A 83 -1 N LEU A 83 O ALA A 87 SHEET 5 AA1 6 ASP A 61 SER A 68 -1 N ILE A 64 O VAL A 78 SHEET 6 AA1 6 ASP A 51 ASN A 57 -1 N VAL A 54 O VAL A 65 CRYST1 28.000 51.900 68.100 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.035714 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019268 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014684 0.00000 MASTER 260 0 0 2 6 0 0 6 1028 1 0 10 END