HEADER SIGNALING PROTEIN 03-JUL-19 6POG TITLE CRYSTAL STRUCTURE OF THE NELL2 EGF1-6-ROBO3 FN1 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: ROUNDABOUT HOMOLOG 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ROUNDABOUT-LIKE PROTEIN 3; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: C-TERMINAL END OF CONSTRUCT CREATED BY NON-SPECIFIC COMPND 7 PROTEOLYSIS. C-TERMINAL END NOT CERTAIN; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PROTEIN KINASE C-BINDING PROTEIN NELL2; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: NEL-LIKE PROTEIN 2,NEL-RELATED PROTEIN 2; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ROBO3; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HIGH FIVE CELLS; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: NELL2, NRP2; SOURCE 14 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: HIGH FIVE CELLS KEYWDS AXON GUIDANCE, NERVOUS SYSTEM, HETERODIMERIC COMPLEX, GLYCOPROTEIN, KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.WANG,J.S.PAK,E.OZKAN REVDAT 2 29-JUL-20 6POG 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 06-MAY-20 6POG 0 JRNL AUTH J.S.PAK,Z.J.DELOUGHERY,J.WANG,N.ACHARYA,Y.PARK,A.JAWORSKI, JRNL AUTH 2 E.OZKAN JRNL TITL NELL2-ROBO3 COMPLEX STRUCTURE REVEALS MECHANISMS OF RECEPTOR JRNL TITL 2 ACTIVATION FOR AXON GUIDANCE. JRNL REF NAT COMMUN V. 11 1489 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32198364 JRNL DOI 10.1038/S41467-020-15211-1 REMARK 2 REMARK 2 RESOLUTION. 2.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_3374: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 17498 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.520 REMARK 3 FREE R VALUE TEST SET COUNT : 1315 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.3451 - 5.7278 1.00 1947 160 0.2471 0.2682 REMARK 3 2 5.7278 - 4.5475 1.00 1831 148 0.2024 0.2013 REMARK 3 3 4.5475 - 3.9729 1.00 1819 149 0.1993 0.2502 REMARK 3 4 3.9729 - 3.6098 1.00 1779 145 0.2367 0.2428 REMARK 3 5 3.6098 - 3.3511 1.00 1806 146 0.2435 0.2946 REMARK 3 6 3.3511 - 3.1536 1.00 1769 142 0.2567 0.3407 REMARK 3 7 3.1536 - 2.9957 1.00 1756 142 0.3031 0.3499 REMARK 3 8 2.9957 - 2.8653 1.00 1794 146 0.3421 0.3832 REMARK 3 9 2.8653 - 2.7550 0.95 1682 137 0.3527 0.3600 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2493 REMARK 3 ANGLE : 0.594 3403 REMARK 3 CHIRALITY : 0.041 390 REMARK 3 PLANARITY : 0.004 456 REMARK 3 DIHEDRAL : 11.192 1516 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 553 THROUGH 562 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.0411 20.6173 -22.9391 REMARK 3 T TENSOR REMARK 3 T11: 0.5673 T22: 0.8507 REMARK 3 T33: 0.8621 T12: -0.0709 REMARK 3 T13: 0.0584 T23: 0.0232 REMARK 3 L TENSOR REMARK 3 L11: 2.0451 L22: 5.2070 REMARK 3 L33: 4.9035 L12: -0.4645 REMARK 3 L13: -1.1503 L23: 4.9556 REMARK 3 S TENSOR REMARK 3 S11: 0.3356 S12: -0.2506 S13: -1.3785 REMARK 3 S21: 0.3124 S22: 0.1526 S23: -1.7358 REMARK 3 S31: 1.2177 S32: 0.1014 S33: -0.0609 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 563 THROUGH 567 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.3203 20.5950 -40.9437 REMARK 3 T TENSOR REMARK 3 T11: 0.8181 T22: 1.7017 REMARK 3 T33: 1.4185 T12: -0.0596 REMARK 3 T13: -0.4147 T23: -0.5870 REMARK 3 L TENSOR REMARK 3 L11: 6.7965 L22: 6.0274 REMARK 3 L33: 8.0128 L12: 5.1825 REMARK 3 L13: -7.2282 L23: -6.3087 REMARK 3 S TENSOR REMARK 3 S11: 0.1075 S12: 1.3442 S13: 0.5494 REMARK 3 S21: -1.2488 S22: 0.5641 S23: 2.1991 REMARK 3 S31: 0.3378 S32: -4.5470 S33: 0.3610 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 568 THROUGH 585 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.2817 22.5483 -31.3316 REMARK 3 T TENSOR REMARK 3 T11: 0.5729 T22: 0.5711 REMARK 3 T33: 0.9210 T12: -0.1056 REMARK 3 T13: -0.1412 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 9.5696 L22: 4.6271 REMARK 3 L33: 3.0608 L12: 1.0445 REMARK 3 L13: -5.0523 L23: -1.9897 REMARK 3 S TENSOR REMARK 3 S11: 0.3899 S12: 0.7715 S13: -0.2911 REMARK 3 S21: -0.5188 S22: 0.3145 S23: 0.8169 REMARK 3 S31: 0.6500 S32: -1.0800 S33: -0.8672 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 586 THROUGH 594 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.5714 26.3856 -30.3404 REMARK 3 T TENSOR REMARK 3 T11: 0.5283 T22: 0.7933 REMARK 3 T33: 0.6797 T12: 0.0928 REMARK 3 T13: -0.2137 T23: -0.2653 REMARK 3 L TENSOR REMARK 3 L11: 8.3954 L22: 5.7308 REMARK 3 L33: 7.2392 L12: -4.0189 REMARK 3 L13: -7.0859 L23: 6.2401 REMARK 3 S TENSOR REMARK 3 S11: -0.1374 S12: -0.2424 S13: -1.0075 REMARK 3 S21: -0.7949 S22: -0.5690 S23: 0.9033 REMARK 3 S31: -1.5121 S32: 1.3007 S33: 1.3376 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 595 THROUGH 612 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.1735 26.2772 -36.5631 REMARK 3 T TENSOR REMARK 3 T11: 0.4993 T22: 0.9137 REMARK 3 T33: 0.5751 T12: -0.0853 REMARK 3 T13: -0.0041 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 9.0119 L22: 3.9418 REMARK 3 L33: 8.2802 L12: -4.7143 REMARK 3 L13: -0.2279 L23: 4.0550 REMARK 3 S TENSOR REMARK 3 S11: -0.2052 S12: 0.5509 S13: 0.3892 REMARK 3 S21: 0.2597 S22: 0.3492 S23: -0.5127 REMARK 3 S31: -0.4015 S32: 0.1267 S33: -0.1564 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 613 THROUGH 633 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.9494 24.2950 -39.6637 REMARK 3 T TENSOR REMARK 3 T11: 0.5801 T22: 0.7900 REMARK 3 T33: 0.6702 T12: 0.0023 REMARK 3 T13: -0.0682 T23: -0.0711 REMARK 3 L TENSOR REMARK 3 L11: 7.4428 L22: 8.7005 REMARK 3 L33: 8.6251 L12: 0.4569 REMARK 3 L13: 1.2638 L23: 3.4254 REMARK 3 S TENSOR REMARK 3 S11: 0.5002 S12: 1.4886 S13: -0.5480 REMARK 3 S21: -1.2480 S22: 0.0154 S23: 0.7456 REMARK 3 S31: -0.0663 S32: -0.5562 S33: -0.6382 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 634 THROUGH 643 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0332 22.7336 -23.5707 REMARK 3 T TENSOR REMARK 3 T11: 0.4157 T22: 1.1425 REMARK 3 T33: 1.1179 T12: -0.0572 REMARK 3 T13: -0.2721 T23: 0.0583 REMARK 3 L TENSOR REMARK 3 L11: 7.0379 L22: 7.7216 REMARK 3 L33: 7.4735 L12: 3.7135 REMARK 3 L13: 6.8553 L23: 5.7951 REMARK 3 S TENSOR REMARK 3 S11: 0.5402 S12: -1.1629 S13: -1.1724 REMARK 3 S21: 3.9538 S22: 0.9584 S23: -1.5305 REMARK 3 S31: 2.0869 S32: -1.1066 S33: -1.2918 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 644 THROUGH 653 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2226 18.2067 -49.0041 REMARK 3 T TENSOR REMARK 3 T11: 1.0335 T22: 1.6809 REMARK 3 T33: 0.8390 T12: -0.0193 REMARK 3 T13: -0.2720 T23: -0.2911 REMARK 3 L TENSOR REMARK 3 L11: 1.9880 L22: 6.7790 REMARK 3 L33: 5.0299 L12: -2.4041 REMARK 3 L13: 7.3572 L23: -1.1439 REMARK 3 S TENSOR REMARK 3 S11: -0.0833 S12: 1.5933 S13: -0.6685 REMARK 3 S21: -2.5852 S22: -0.4379 S23: 1.4924 REMARK 3 S31: 2.5578 S32: -1.5683 S33: -0.3087 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 399 THROUGH 440 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.7805 52.3407 -22.8011 REMARK 3 T TENSOR REMARK 3 T11: 1.5670 T22: 1.6651 REMARK 3 T33: 2.2551 T12: -0.0065 REMARK 3 T13: -0.4456 T23: -0.0584 REMARK 3 L TENSOR REMARK 3 L11: 3.6953 L22: 9.4666 REMARK 3 L33: 5.3049 L12: -5.8436 REMARK 3 L13: -0.5456 L23: 1.8479 REMARK 3 S TENSOR REMARK 3 S11: -1.0484 S12: -1.8425 S13: 3.0621 REMARK 3 S21: -0.6924 S22: 0.4960 S23: -0.3015 REMARK 3 S31: -1.2853 S32: -0.8144 S33: 0.5038 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 441 THROUGH 510 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.9623 21.1370 -31.6599 REMARK 3 T TENSOR REMARK 3 T11: 0.5063 T22: 0.8062 REMARK 3 T33: 0.7286 T12: 0.0313 REMARK 3 T13: -0.0768 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 8.2783 L22: 7.2514 REMARK 3 L33: 6.5143 L12: 2.3068 REMARK 3 L13: 1.7044 L23: 4.8828 REMARK 3 S TENSOR REMARK 3 S11: 0.0848 S12: 0.3052 S13: -1.0375 REMARK 3 S21: 0.4504 S22: 0.7584 S23: -0.9174 REMARK 3 S31: 0.6537 S32: 1.1896 S33: -0.9096 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 511 THROUGH 642 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.5117 -20.5232 -70.6462 REMARK 3 T TENSOR REMARK 3 T11: 0.5919 T22: 0.9311 REMARK 3 T33: 0.8669 T12: 0.0467 REMARK 3 T13: 0.0534 T23: -0.1080 REMARK 3 L TENSOR REMARK 3 L11: 7.1211 L22: 9.4888 REMARK 3 L33: 9.5849 L12: 3.9490 REMARK 3 L13: 5.8977 L23: 6.9441 REMARK 3 S TENSOR REMARK 3 S11: 0.4640 S12: 0.7953 S13: -1.0943 REMARK 3 S21: -0.4268 S22: 0.6246 S23: -0.9659 REMARK 3 S31: 0.5759 S32: 0.5410 S33: -1.1559 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6POG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1000241041. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : DOUBLE SI(111) CRYSTAL, CRYO REMARK 200 -COOLED REMARK 200 OPTICS : ADJUSTABLE FOCUS K-B PAIR SI REMARK 200 PLUS PT, RH COATINGS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20170601 REMARK 200 DATA SCALING SOFTWARE : XDS 20170601 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17564 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.755 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 1.59900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.810 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL, PHASER 2.8.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17% PEG 3,350, 0.4 M NASCN, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.93650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.78800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.21950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.78800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.93650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.21950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 550 REMARK 465 GLU A 551 REMARK 465 PRO A 552 REMARK 465 PRO A 654 REMARK 465 SER A 655 REMARK 465 ARG A 656 REMARK 465 PRO A 657 REMARK 465 VAL A 658 REMARK 465 GLU A 659 REMARK 465 ASP A 660 REMARK 465 PRO A 661 REMARK 465 TRP A 662 REMARK 465 ARG A 663 REMARK 465 ALA B 396 REMARK 465 GLY B 397 REMARK 465 TYR B 398 REMARK 465 GLY B 609 REMARK 465 ARG B 610 REMARK 465 HIS B 611 REMARK 465 PRO B 631 REMARK 465 HIS B 632 REMARK 465 GLY B 633 REMARK 465 LYS B 634 REMARK 465 ASN B 635 REMARK 465 HIS B 643 REMARK 465 HIS B 644 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP B 399 CG OD1 OD2 REMARK 470 GLU B 403 CG CD OE1 OE2 REMARK 470 ARG B 404 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 405 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 409 CG CD OE1 OE2 REMARK 470 ASN B 410 CG OD1 ND2 REMARK 470 ARG B 414 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 419 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 425 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 429 NE CZ NH1 NH2 REMARK 470 ARG B 432 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 433 CG CD OE1 OE2 REMARK 470 ASP B 434 CG OD1 OD2 REMARK 470 TYR B 437 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 446 CG CD OE1 OE2 REMARK 470 ILE B 487 CG1 CG2 CD1 REMARK 470 LYS B 522 CG CD CE NZ REMARK 470 LYS B 526 CG CD CE NZ REMARK 470 GLN B 545 CG CD OE1 NE2 REMARK 470 GLN B 565 CD OE1 NE2 REMARK 470 ASP B 567 CG OD1 OD2 REMARK 470 ARG B 569 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 584 NE CZ NH1 NH2 REMARK 470 ASN B 590 CG OD1 ND2 REMARK 470 MET B 592 CG SD CE REMARK 470 PHE B 593 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 598 CG CD OE1 OE2 REMARK 470 ASN B 615 CG OD1 ND2 REMARK 470 ASP B 616 CG OD1 OD2 REMARK 470 THR B 617 OG1 CG2 REMARK 470 PHE B 620 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG B 629 CG CD NE CZ NH1 NH2 REMARK 470 THR B 637 OG1 CG2 REMARK 470 HIS B 642 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 589 OG SER B 599 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 568 -161.63 -107.29 REMARK 500 GLN A 581 71.09 -113.32 REMARK 500 SER A 617 -163.52 -108.01 REMARK 500 SER A 652 -152.17 -80.85 REMARK 500 ARG B 404 -158.41 -146.05 REMARK 500 ALA B 436 -81.08 -73.81 REMARK 500 HIS B 449 51.50 -113.01 REMARK 500 ARG B 452 -135.54 -98.88 REMARK 500 SER B 463 -150.46 -157.37 REMARK 500 ASP B 484 95.01 -62.84 REMARK 500 ASN B 489 -7.24 73.67 REMARK 500 ASN B 496 59.52 -101.76 REMARK 500 PHE B 563 -110.02 51.35 REMARK 500 CYS B 566 79.69 -68.09 REMARK 500 ASP B 567 -161.63 -111.84 REMARK 500 SER B 568 -118.97 65.82 REMARK 500 TRP B 578 -147.22 -162.83 REMARK 500 ASN B 590 -75.70 -66.81 REMARK 500 CYS B 606 58.69 -160.81 REMARK 500 CYS B 613 -138.63 60.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 905 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 440 OD1 REMARK 620 2 ASP B 440 OD2 51.5 REMARK 620 3 ILE B 441 O 82.9 65.9 REMARK 620 4 GLU B 443 OE1 137.0 130.0 67.5 REMARK 620 5 ASN B 459 OD1 129.6 78.6 82.8 78.4 REMARK 620 6 THR B 460 O 81.0 77.0 141.9 140.8 81.4 REMARK 620 7 SER B 463 O 133.2 145.7 140.1 73.1 83.3 71.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 906 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 555 OD1 REMARK 620 2 ASP B 555 OD2 53.8 REMARK 620 3 ILE B 556 O 95.8 67.2 REMARK 620 4 GLU B 558 OE1 162.1 121.3 67.9 REMARK 620 5 GLU B 558 OE2 115.6 135.5 72.0 53.6 REMARK 620 6 ASN B 574 OD1 123.4 80.4 94.5 67.5 120.5 REMARK 620 7 LEU B 575 O 72.3 85.4 151.6 125.6 136.4 72.7 REMARK 620 8 TRP B 578 O 123.2 140.6 140.3 72.4 83.4 71.4 60.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 907 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 602 OD1 REMARK 620 2 ASP B 602 OD2 52.7 REMARK 620 3 ILE B 603 O 80.9 65.3 REMARK 620 4 GLU B 605 OE1 79.0 127.4 90.1 REMARK 620 5 ASN B 621 OD1 112.4 66.2 99.3 166.2 REMARK 620 6 LEU B 622 O 67.6 72.7 137.3 110.2 69.3 REMARK 620 7 GLY B 625 O 117.2 163.1 129.9 53.4 112.9 91.0 REMARK 620 N 1 2 3 4 5 6 DBREF 6POG A 551 663 UNP Q96MS0 ROBO3_HUMAN 551 663 DBREF 6POG B 397 638 UNP Q99435 NELL2_HUMAN 397 638 SEQADV 6POG ALA A 550 UNP Q96MS0 EXPRESSION TAG SEQADV 6POG ALA B 396 UNP Q99435 EXPRESSION TAG SEQADV 6POG HIS B 639 UNP Q99435 EXPRESSION TAG SEQADV 6POG HIS B 640 UNP Q99435 EXPRESSION TAG SEQADV 6POG HIS B 641 UNP Q99435 EXPRESSION TAG SEQADV 6POG HIS B 642 UNP Q99435 EXPRESSION TAG SEQADV 6POG HIS B 643 UNP Q99435 EXPRESSION TAG SEQADV 6POG HIS B 644 UNP Q99435 EXPRESSION TAG SEQRES 1 A 114 ALA GLU PRO SER SER PRO PRO GLY ALA PRO SER GLN PRO SEQRES 2 A 114 VAL VAL THR GLU ILE THR LYS ASN SER ILE THR LEU THR SEQRES 3 A 114 TRP LYS PRO ASN PRO GLN THR GLY ALA ALA VAL THR SER SEQRES 4 A 114 TYR VAL ILE GLU ALA PHE SER PRO ALA ALA GLY ASN THR SEQRES 5 A 114 TRP ARG THR VAL ALA ASP GLY VAL GLN LEU GLU THR HIS SEQRES 6 A 114 THR VAL SER GLY LEU GLN PRO ASN THR ILE TYR LEU PHE SEQRES 7 A 114 LEU VAL ARG ALA VAL GLY ALA TRP GLY LEU SER GLU PRO SEQRES 8 A 114 SER PRO VAL SER GLU PRO VAL ARG THR GLN ASP SER SER SEQRES 9 A 114 PRO SER ARG PRO VAL GLU ASP PRO TRP ARG SEQRES 1 B 249 ALA GLY TYR ASP PHE CYS SER GLU ARG HIS ASN CYS MET SEQRES 2 B 249 GLU ASN SER ILE CYS ARG ASN LEU ASN ASP ARG ALA VAL SEQRES 3 B 249 CYS SER CYS ARG ASP GLY PHE ARG ALA LEU ARG GLU ASP SEQRES 4 B 249 ASN ALA TYR CYS GLU ASP ILE ASP GLU CYS ALA GLU GLY SEQRES 5 B 249 ARG HIS TYR CYS ARG GLU ASN THR MET CYS VAL ASN THR SEQRES 6 B 249 PRO GLY SER PHE MET CYS ILE CYS LYS THR GLY TYR ILE SEQRES 7 B 249 ARG ILE ASP ASP TYR SER CYS THR GLU HIS ASP GLU CYS SEQRES 8 B 249 ILE THR ASN GLN HIS ASN CYS ASP GLU ASN ALA LEU CYS SEQRES 9 B 249 PHE ASN THR VAL GLY GLY HIS ASN CYS VAL CYS LYS PRO SEQRES 10 B 249 GLY TYR THR GLY ASN GLY THR THR CYS LYS ALA PHE CYS SEQRES 11 B 249 LYS ASP GLY CYS ARG ASN GLY GLY ALA CYS ILE ALA ALA SEQRES 12 B 249 ASN VAL CYS ALA CYS PRO GLN GLY PHE THR GLY PRO SER SEQRES 13 B 249 CYS GLU THR ASP ILE ASP GLU CYS SER ASP GLY PHE VAL SEQRES 14 B 249 GLN CYS ASP SER ARG ALA ASN CYS ILE ASN LEU PRO GLY SEQRES 15 B 249 TRP TYR HIS CYS GLU CYS ARG ASP GLY TYR HIS ASP ASN SEQRES 16 B 249 GLY MET PHE SER PRO SER GLY GLU SER CYS GLU ASP ILE SEQRES 17 B 249 ASP GLU CYS GLY THR GLY ARG HIS SER CYS ALA ASN ASP SEQRES 18 B 249 THR ILE CYS PHE ASN LEU ASP GLY GLY TYR ASP CYS ARG SEQRES 19 B 249 CYS PRO HIS GLY LYS ASN CYS THR GLY HIS HIS HIS HIS SEQRES 20 B 249 HIS HIS HET NAG C 1 14 HET NAG C 2 14 HET FUC C 3 10 HET NAG B 904 14 HET CA B 905 1 HET CA B 906 1 HET CA B 907 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM CA CALCIUM ION FORMUL 3 NAG 3(C8 H15 N O6) FORMUL 3 FUC C6 H12 O5 FORMUL 5 CA 3(CA 2+) HELIX 1 AA1 PHE B 400 ARG B 404 1 5 SHEET 1 AA1 3 VAL A 563 ILE A 567 0 SHEET 2 AA1 3 ILE A 572 THR A 575 -1 O THR A 575 N VAL A 563 SHEET 3 AA1 3 THR A 613 VAL A 616 -1 O HIS A 614 N LEU A 574 SHEET 1 AA2 4 ARG A 603 VAL A 609 0 SHEET 2 AA2 4 VAL A 586 PHE A 594 -1 N ALA A 593 O ARG A 603 SHEET 3 AA2 4 ILE A 624 GLY A 633 -1 O VAL A 632 N THR A 587 SHEET 4 AA2 4 GLY A 636 LEU A 637 -1 O GLY A 636 N GLY A 633 SHEET 1 AA3 4 ARG A 603 VAL A 609 0 SHEET 2 AA3 4 VAL A 586 PHE A 594 -1 N ALA A 593 O ARG A 603 SHEET 3 AA3 4 ILE A 624 GLY A 633 -1 O VAL A 632 N THR A 587 SHEET 4 AA3 4 VAL A 647 ARG A 648 -1 O VAL A 647 N TYR A 625 SHEET 1 AA4 2 SER B 411 ASN B 415 0 SHEET 2 AA4 2 ALA B 420 CYS B 424 -1 O SER B 423 N ILE B 412 SHEET 1 AA5 2 PHE B 428 ALA B 430 0 SHEET 2 AA5 2 CYS B 438 ASP B 440 -1 O GLU B 439 N ARG B 429 SHEET 1 AA6 2 THR B 455 THR B 460 0 SHEET 2 AA6 2 SER B 463 CYS B 468 -1 O ILE B 467 N MET B 456 SHEET 1 AA7 2 ILE B 473 ASP B 476 0 SHEET 2 AA7 2 SER B 479 THR B 481 -1 O THR B 481 N ILE B 473 SHEET 1 AA8 2 ALA B 497 THR B 502 0 SHEET 2 AA8 2 GLY B 505 CYS B 510 -1 O VAL B 509 N LEU B 498 SHEET 1 AA9 2 TYR B 514 GLY B 516 0 SHEET 2 AA9 2 CYS B 521 ALA B 523 -1 O LYS B 522 N THR B 515 SHEET 1 AB1 2 ALA B 534 ALA B 537 0 SHEET 2 AB1 2 VAL B 540 ALA B 542 -1 O ALA B 542 N ALA B 534 SHEET 1 AB2 2 PHE B 547 THR B 548 0 SHEET 2 AB2 2 THR B 554 ASP B 555 -1 O THR B 554 N THR B 548 SHEET 1 AB3 2 ALA B 570 LEU B 575 0 SHEET 2 AB3 2 TRP B 578 CYS B 583 -1 O GLU B 582 N ASN B 571 SHEET 1 AB4 2 TYR B 587 ASP B 589 0 SHEET 2 AB4 2 CYS B 600 ASP B 602 -1 O GLU B 601 N HIS B 588 SHEET 1 AB5 2 ILE B 618 ASN B 621 0 SHEET 2 AB5 2 TYR B 626 ARG B 629 -1 O ARG B 629 N ILE B 618 SSBOND 1 CYS B 401 CYS B 413 1555 1555 2.03 SSBOND 2 CYS B 407 CYS B 422 1555 1555 2.03 SSBOND 3 CYS B 424 CYS B 438 1555 1555 2.03 SSBOND 4 CYS B 444 CYS B 457 1555 1555 2.03 SSBOND 5 CYS B 451 CYS B 466 1555 1555 2.03 SSBOND 6 CYS B 468 CYS B 480 1555 1555 2.03 SSBOND 7 CYS B 486 CYS B 499 1555 1555 2.03 SSBOND 8 CYS B 493 CYS B 508 1555 1555 2.03 SSBOND 9 CYS B 510 CYS B 521 1555 1555 2.03 SSBOND 10 CYS B 525 CYS B 535 1555 1555 2.03 SSBOND 11 CYS B 529 CYS B 541 1555 1555 2.03 SSBOND 12 CYS B 543 CYS B 552 1555 1555 2.03 SSBOND 13 CYS B 559 CYS B 572 1555 1555 2.03 SSBOND 14 CYS B 566 CYS B 581 1555 1555 2.03 SSBOND 15 CYS B 583 CYS B 600 1555 1555 2.03 SSBOND 16 CYS B 606 CYS B 619 1555 1555 2.01 SSBOND 17 CYS B 613 CYS B 628 1555 1555 2.03 SSBOND 18 CYS B 630 CYS B 636 1555 1555 2.03 LINK ND2 ASN B 517 C1 NAG C 1 1555 1555 1.44 LINK OG1 THR B 548 C1 NAG B 904 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.37 LINK O6 NAG C 1 C1 FUC C 3 1555 1555 1.37 LINK OD1 ASP B 440 CA CA B 905 1555 1555 2.49 LINK OD2 ASP B 440 CA CA B 905 1555 1555 2.54 LINK O ILE B 441 CA CA B 905 1555 1555 2.56 LINK OE1 GLU B 443 CA CA B 905 1555 1555 2.48 LINK OD1 ASN B 459 CA CA B 905 1555 1555 2.41 LINK O THR B 460 CA CA B 905 1555 1555 2.42 LINK O SER B 463 CA CA B 905 1555 1555 2.49 LINK OD1 ASP B 555 CA CA B 906 1555 1555 2.42 LINK OD2 ASP B 555 CA CA B 906 1555 1555 2.42 LINK O ILE B 556 CA CA B 906 1555 1555 2.43 LINK OE1 GLU B 558 CA CA B 906 1555 1555 2.41 LINK OE2 GLU B 558 CA CA B 906 1555 1555 2.45 LINK OD1 ASN B 574 CA CA B 906 1555 1555 2.40 LINK O LEU B 575 CA CA B 906 1555 1555 2.59 LINK O TRP B 578 CA CA B 906 1555 1555 2.66 LINK OD1 ASP B 602 CA CA B 907 1555 1555 2.38 LINK OD2 ASP B 602 CA CA B 907 1555 1555 2.53 LINK O ILE B 603 CA CA B 907 1555 1555 2.69 LINK OE1 GLU B 605 CA CA B 907 1555 1555 2.20 LINK OD1 ASN B 621 CA CA B 907 1555 1555 2.51 LINK O LEU B 622 CA CA B 907 1555 1555 2.42 LINK O GLY B 625 CA CA B 907 1555 1555 3.06 CRYST1 41.873 90.439 171.576 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023882 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011057 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005828 0.00000