HEADER TRANSFERASE 08-JUL-19 6PPL TITLE CRYO-EM STRUCTURE OF HUMAN NATE COMPLEX (NATA/NAA50) COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ALPHA-ACETYLTRANSFERASE 50; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HNAA50P,N-ACETYLTRANSFERASE 13,N-ACETYLTRANSFERASE 5,HNAT5, COMPND 5 N-ACETYLTRANSFERASE SAN HOMOLOG,HSAN,N-EPSILON-ACETYLTRANSFERASE 50, COMPND 6 NATE CATALYTIC SUBUNIT; COMPND 7 EC: 2.3.1.258,2.3.1.-; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: N-ALPHA-ACETYLTRANSFERASE 15, NATA AUXILIARY SUBUNIT; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: GASTRIC CANCER ANTIGEN GA19, N-TERMINAL ACETYLTRANSFERASE, COMPND 13 NMDA RECEPTOR-REGULATED PROTEIN 1, PROTEIN TUBEDOWN-1, TBDN100; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: N-ALPHA-ACETYLTRANSFERASE 10; COMPND 17 CHAIN: C; COMPND 18 SYNONYM: N-TERMINAL ACETYLTRANSFERASE COMPLEX ARD1 SUBUNIT HOMOLOG A, COMPND 19 HARD1,NATA CATALYTIC SUBUNIT NAA10; COMPND 20 EC: 2.3.1.255; COMPND 21 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NAA50, MAK3, NAT13, NAT5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: NAA15, GA19, NARG1, NATH, TBDN100; SOURCE 13 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 14 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 16 MOL_ID: 3; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_COMMON: HUMAN; SOURCE 19 ORGANISM_TAXID: 9606; SOURCE 20 GENE: NAA10, ARD1, ARD1A, TE2; SOURCE 21 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 22 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS NATA, NAA50, NATE, TRANSFERASE EXPDTA ELECTRON MICROSCOPY AUTHOR S.DENG,R.MARMORSTEIN REVDAT 3 14-OCT-20 6PPL 1 HETSYN REVDAT 2 26-FEB-20 6PPL 1 JRNL REVDAT 1 19-FEB-20 6PPL 0 JRNL AUTH S.DENG,N.MCTIERNAN,X.WEI,T.ARNESEN,R.MARMORSTEIN JRNL TITL MOLECULAR BASIS FOR N-TERMINAL ACETYLATION BY HUMAN NATE AND JRNL TITL 2 ITS MODULATION BY HYPK. JRNL REF NAT COMMUN V. 11 818 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32042062 JRNL DOI 10.1038/S41467-020-14584-7 REMARK 2 REMARK 2 RESOLUTION. 3.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 6C9M REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.020 REMARK 3 NUMBER OF PARTICLES : 353541 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6PPL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1000242446. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : HUMAN NATE COMPLEX; N-ALPHA REMARK 245 -ACETYLTRANSFERASE 50; N-ALPHA- REMARK 245 ACETYLTRANSFERASE 15, NATA REMARK 245 AUXILIARY SUBUNIT, N-ALPHA- REMARK 245 ACETYLTRANSFERASE 10 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 1.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 1.60 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 156 REMARK 465 PRO A 157 REMARK 465 SER A 158 REMARK 465 GLY A 159 REMARK 465 GLN A 160 REMARK 465 ASN A 161 REMARK 465 ALA A 162 REMARK 465 ASP A 163 REMARK 465 VAL A 164 REMARK 465 GLN A 165 REMARK 465 LYS A 166 REMARK 465 THR A 167 REMARK 465 ASP A 168 REMARK 465 ASN A 169 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 ALA B 3 REMARK 465 VAL B 4 REMARK 465 SER B 5 REMARK 465 LEU B 6 REMARK 465 PRO B 7 REMARK 465 PRO B 8 REMARK 465 LYS B 9 REMARK 465 GLU B 10 REMARK 465 ASN B 11 REMARK 465 ALA B 12 REMARK 465 LEU B 13 REMARK 465 PHE B 14 REMARK 465 LYS B 15 REMARK 465 ARG B 16 REMARK 465 ILE B 17 REMARK 465 LEU B 18 REMARK 465 ARG B 19 REMARK 465 CYS B 20 REMARK 465 TYR B 21 REMARK 465 GLU B 22 REMARK 465 HIS B 23 REMARK 465 LYS B 24 REMARK 465 GLN B 25 REMARK 465 TYR B 26 REMARK 465 ARG B 27 REMARK 465 ASN B 28 REMARK 465 GLY B 29 REMARK 465 LEU B 30 REMARK 465 LYS B 31 REMARK 465 PHE B 32 REMARK 465 CYS B 33 REMARK 465 LYS B 34 REMARK 465 GLN B 35 REMARK 465 ILE B 36 REMARK 465 LEU B 37 REMARK 465 SER B 38 REMARK 465 ASN B 39 REMARK 465 PRO B 40 REMARK 465 LYS B 41 REMARK 465 PHE B 42 REMARK 465 ALA B 43 REMARK 465 GLU B 44 REMARK 465 HIS B 45 REMARK 465 GLY B 46 REMARK 465 GLU B 47 REMARK 465 THR B 48 REMARK 465 LEU B 49 REMARK 465 ALA B 50 REMARK 465 MET B 51 REMARK 465 LYS B 52 REMARK 465 GLY B 53 REMARK 465 LEU B 54 REMARK 465 THR B 55 REMARK 465 LEU B 56 REMARK 465 ASN B 57 REMARK 465 CYS B 58 REMARK 465 LEU B 59 REMARK 465 GLY B 60 REMARK 465 LYS B 61 REMARK 465 LYS B 62 REMARK 465 GLU B 63 REMARK 465 GLU B 64 REMARK 465 ALA B 65 REMARK 465 TYR B 66 REMARK 465 GLU B 67 REMARK 465 LEU B 68 REMARK 465 VAL B 69 REMARK 465 ARG B 70 REMARK 465 ARG B 71 REMARK 465 GLY B 72 REMARK 465 LEU B 73 REMARK 465 ARG B 74 REMARK 465 ASN B 75 REMARK 465 ASP B 76 REMARK 465 LEU B 77 REMARK 465 LYS B 78 REMARK 465 SER B 79 REMARK 465 HIS B 80 REMARK 465 VAL B 81 REMARK 465 CYS B 82 REMARK 465 TRP B 83 REMARK 465 HIS B 84 REMARK 465 VAL B 85 REMARK 465 TYR B 86 REMARK 465 GLY B 87 REMARK 465 LEU B 88 REMARK 465 LEU B 89 REMARK 465 GLN B 90 REMARK 465 ARG B 91 REMARK 465 SER B 92 REMARK 465 ASP B 93 REMARK 465 LYS B 94 REMARK 465 LYS B 95 REMARK 465 TYR B 96 REMARK 465 ASP B 97 REMARK 465 GLU B 98 REMARK 465 ALA B 99 REMARK 465 ILE B 100 REMARK 465 LYS B 101 REMARK 465 CYS B 102 REMARK 465 TYR B 103 REMARK 465 ARG B 104 REMARK 465 ASN B 105 REMARK 465 ALA B 106 REMARK 465 LEU B 107 REMARK 465 LYS B 108 REMARK 465 TRP B 109 REMARK 465 ASP B 110 REMARK 465 LYS B 111 REMARK 465 ASP B 112 REMARK 465 THR B 574 REMARK 465 ASP B 575 REMARK 465 GLU B 576 REMARK 465 ASN B 577 REMARK 465 LYS B 578 REMARK 465 GLU B 579 REMARK 465 HIS B 580 REMARK 465 GLU B 581 REMARK 465 ALA B 582 REMARK 465 ASP B 583 REMARK 465 THR B 584 REMARK 465 ALA B 585 REMARK 465 ASN B 586 REMARK 465 MET B 587 REMARK 465 SER B 588 REMARK 465 ASP B 589 REMARK 465 LYS B 590 REMARK 465 GLU B 591 REMARK 465 LEU B 592 REMARK 465 LYS B 593 REMARK 465 LYS B 594 REMARK 465 LEU B 595 REMARK 465 ARG B 596 REMARK 465 ASN B 597 REMARK 465 LYS B 598 REMARK 465 GLN B 599 REMARK 465 ARG B 600 REMARK 465 ARG B 601 REMARK 465 ALA B 602 REMARK 465 GLN B 603 REMARK 465 LYS B 604 REMARK 465 LYS B 605 REMARK 465 ALA B 606 REMARK 465 GLN B 607 REMARK 465 ILE B 608 REMARK 465 GLU B 609 REMARK 465 GLU B 610 REMARK 465 GLU B 611 REMARK 465 LYS B 612 REMARK 465 LYS B 613 REMARK 465 ASN B 614 REMARK 465 ALA B 615 REMARK 465 GLU B 616 REMARK 465 LYS B 617 REMARK 465 GLU B 618 REMARK 465 LYS B 619 REMARK 465 GLN B 620 REMARK 465 GLN B 621 REMARK 465 ARG B 622 REMARK 465 ASN B 623 REMARK 465 GLN B 624 REMARK 465 LYS B 625 REMARK 465 LYS B 626 REMARK 465 LYS B 627 REMARK 465 LYS B 628 REMARK 465 ASP B 629 REMARK 465 ASP B 630 REMARK 465 ASP B 631 REMARK 465 ASP B 632 REMARK 465 GLU B 633 REMARK 465 GLU B 634 REMARK 465 ILE B 635 REMARK 465 GLY B 636 REMARK 465 GLY B 637 REMARK 465 GLY B 842 REMARK 465 TYR B 843 REMARK 465 GLU B 844 REMARK 465 GLU B 845 REMARK 465 ASP B 846 REMARK 465 MET B 847 REMARK 465 LYS B 848 REMARK 465 ILE B 849 REMARK 465 THR B 850 REMARK 465 VAL B 851 REMARK 465 ASN B 852 REMARK 465 GLY B 853 REMARK 465 ASP B 854 REMARK 465 SER B 855 REMARK 465 SER B 856 REMARK 465 ALA B 857 REMARK 465 GLU B 858 REMARK 465 ALA B 859 REMARK 465 GLU B 860 REMARK 465 GLU B 861 REMARK 465 LEU B 862 REMARK 465 ALA B 863 REMARK 465 ASN B 864 REMARK 465 GLU B 865 REMARK 465 ILE B 866 REMARK 465 HIS C 161 REMARK 465 LEU C 162 REMARK 465 GLU C 163 REMARK 465 LEU C 164 REMARK 465 LYS C 165 REMARK 465 GLU C 166 REMARK 465 LYS C 167 REMARK 465 GLY C 168 REMARK 465 ARG C 169 REMARK 465 HIS C 170 REMARK 465 VAL C 171 REMARK 465 VAL C 172 REMARK 465 LEU C 173 REMARK 465 GLY C 174 REMARK 465 ALA C 175 REMARK 465 ILE C 176 REMARK 465 GLU C 177 REMARK 465 ASN C 178 REMARK 465 LYS C 179 REMARK 465 VAL C 180 REMARK 465 GLU C 181 REMARK 465 SER C 182 REMARK 465 LYS C 183 REMARK 465 GLY C 184 REMARK 465 ASN C 185 REMARK 465 SER C 186 REMARK 465 PRO C 187 REMARK 465 PRO C 188 REMARK 465 SER C 189 REMARK 465 SER C 190 REMARK 465 GLY C 191 REMARK 465 GLU C 192 REMARK 465 ALA C 193 REMARK 465 CYS C 194 REMARK 465 ARG C 195 REMARK 465 GLU C 196 REMARK 465 GLU C 197 REMARK 465 LYS C 198 REMARK 465 GLY C 199 REMARK 465 LEU C 200 REMARK 465 ALA C 201 REMARK 465 ALA C 202 REMARK 465 GLU C 203 REMARK 465 ASP C 204 REMARK 465 SER C 205 REMARK 465 GLY C 206 REMARK 465 GLY C 207 REMARK 465 ASP C 208 REMARK 465 SER C 209 REMARK 465 LYS C 210 REMARK 465 ASP C 211 REMARK 465 LEU C 212 REMARK 465 SER C 213 REMARK 465 GLU C 214 REMARK 465 VAL C 215 REMARK 465 SER C 216 REMARK 465 GLU C 217 REMARK 465 THR C 218 REMARK 465 THR C 219 REMARK 465 GLU C 220 REMARK 465 SER C 221 REMARK 465 THR C 222 REMARK 465 ASP C 223 REMARK 465 VAL C 224 REMARK 465 LYS C 225 REMARK 465 ASP C 226 REMARK 465 SER C 227 REMARK 465 SER C 228 REMARK 465 GLU C 229 REMARK 465 ALA C 230 REMARK 465 SER C 231 REMARK 465 ASP C 232 REMARK 465 SER C 233 REMARK 465 ALA C 234 REMARK 465 SER C 235 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 SD CE REMARK 470 GLU C 62 CG CD OE1 OE2 REMARK 470 ASP C 63 CG OD1 OD2 REMARK 470 ASP C 65 CG OD1 OD2 REMARK 470 ARG C 82 CZ NH1 NH2 REMARK 470 ARG C 159 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 160 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD2 LEU C 22 O5P ACO C 901 1.38 REMARK 500 N GLN A 114 CH3 ACO A 201 1.44 REMARK 500 OH TYR B 333 ND1 HIS B 383 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 42 -62.21 -90.91 REMARK 500 LYS A 140 -61.09 -91.41 REMARK 500 ASP B 183 32.83 -98.03 REMARK 500 LYS B 269 74.27 52.62 REMARK 500 PRO B 324 47.38 -82.02 REMARK 500 LEU B 332 31.61 -96.10 REMARK 500 ASP B 335 145.06 -172.84 REMARK 500 SER B 403 -60.16 -94.79 REMARK 500 ASP B 524 30.46 -95.15 REMARK 500 SER B 704 36.65 -99.42 REMARK 500 ASP B 725 51.49 -94.86 REMARK 500 SER B 779 57.40 -95.24 REMARK 500 THR B 788 31.61 -92.97 REMARK 500 ARG B 797 52.75 -91.57 REMARK 500 LEU C 22 136.91 -174.41 REMARK 500 ASP C 47 -169.28 -102.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACO A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IHP B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACO C 901 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-20442 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF HUMAN NATE COMPLEX (NATA/NAA50) DBREF 6PPL A 1 169 UNP Q9GZZ1 NAA50_HUMAN 1 169 DBREF 6PPL B 1 866 UNP Q9BXJ9 NAA15_HUMAN 1 866 DBREF 6PPL C 1 235 UNP P41227 NAA10_HUMAN 1 235 SEQADV 6PPL ACE C 0 UNP P41227 ACETYLATION SEQRES 1 A 169 MET LYS GLY SER ARG ILE GLU LEU GLY ASP VAL THR PRO SEQRES 2 A 169 HIS ASN ILE LYS GLN LEU LYS ARG LEU ASN GLN VAL ILE SEQRES 3 A 169 PHE PRO VAL SER TYR ASN ASP LYS PHE TYR LYS ASP VAL SEQRES 4 A 169 LEU GLU VAL GLY GLU LEU ALA LYS LEU ALA TYR PHE ASN SEQRES 5 A 169 ASP ILE ALA VAL GLY ALA VAL CYS CYS ARG VAL ASP HIS SEQRES 6 A 169 SER GLN ASN GLN LYS ARG LEU TYR ILE MET THR LEU GLY SEQRES 7 A 169 CYS LEU ALA PRO TYR ARG ARG LEU GLY ILE GLY THR LYS SEQRES 8 A 169 MET LEU ASN HIS VAL LEU ASN ILE CYS GLU LYS ASP GLY SEQRES 9 A 169 THR PHE ASP ASN ILE TYR LEU HIS VAL GLN ILE SER ASN SEQRES 10 A 169 GLU SER ALA ILE ASP PHE TYR ARG LYS PHE GLY PHE GLU SEQRES 11 A 169 ILE ILE GLU THR LYS LYS ASN TYR TYR LYS ARG ILE GLU SEQRES 12 A 169 PRO ALA ASP ALA HIS VAL LEU GLN LYS ASN LEU LYS VAL SEQRES 13 A 169 PRO SER GLY GLN ASN ALA ASP VAL GLN LYS THR ASP ASN SEQRES 1 B 866 MET PRO ALA VAL SER LEU PRO PRO LYS GLU ASN ALA LEU SEQRES 2 B 866 PHE LYS ARG ILE LEU ARG CYS TYR GLU HIS LYS GLN TYR SEQRES 3 B 866 ARG ASN GLY LEU LYS PHE CYS LYS GLN ILE LEU SER ASN SEQRES 4 B 866 PRO LYS PHE ALA GLU HIS GLY GLU THR LEU ALA MET LYS SEQRES 5 B 866 GLY LEU THR LEU ASN CYS LEU GLY LYS LYS GLU GLU ALA SEQRES 6 B 866 TYR GLU LEU VAL ARG ARG GLY LEU ARG ASN ASP LEU LYS SEQRES 7 B 866 SER HIS VAL CYS TRP HIS VAL TYR GLY LEU LEU GLN ARG SEQRES 8 B 866 SER ASP LYS LYS TYR ASP GLU ALA ILE LYS CYS TYR ARG SEQRES 9 B 866 ASN ALA LEU LYS TRP ASP LYS ASP ASN LEU GLN ILE LEU SEQRES 10 B 866 ARG ASP LEU SER LEU LEU GLN ILE GLN MET ARG ASP LEU SEQRES 11 B 866 GLU GLY TYR ARG GLU THR ARG TYR GLN LEU LEU GLN LEU SEQRES 12 B 866 ARG PRO ALA GLN ARG ALA SER TRP ILE GLY TYR ALA ILE SEQRES 13 B 866 ALA TYR HIS LEU LEU GLU ASP TYR GLU MET ALA ALA LYS SEQRES 14 B 866 ILE LEU GLU GLU PHE ARG LYS THR GLN GLN THR SER PRO SEQRES 15 B 866 ASP LYS VAL ASP TYR GLU TYR SER GLU LEU LEU LEU TYR SEQRES 16 B 866 GLN ASN GLN VAL LEU ARG GLU ALA GLY LEU TYR ARG GLU SEQRES 17 B 866 ALA LEU GLU HIS LEU CYS THR TYR GLU LYS GLN ILE CYS SEQRES 18 B 866 ASP LYS LEU ALA VAL GLU GLU THR LYS GLY GLU LEU LEU SEQRES 19 B 866 LEU GLN LEU CYS ARG LEU GLU ASP ALA ALA ASP VAL TYR SEQRES 20 B 866 ARG GLY LEU GLN GLU ARG ASN PRO GLU ASN TRP ALA TYR SEQRES 21 B 866 TYR LYS GLY LEU GLU LYS ALA LEU LYS PRO ALA ASN MET SEQRES 22 B 866 LEU GLU ARG LEU LYS ILE TYR GLU GLU ALA TRP THR LYS SEQRES 23 B 866 TYR PRO ARG GLY LEU VAL PRO ARG ARG LEU PRO LEU ASN SEQRES 24 B 866 PHE LEU SER GLY GLU LYS PHE LYS GLU CYS LEU ASP LYS SEQRES 25 B 866 PHE LEU ARG MET ASN PHE SER LYS GLY CYS PRO PRO VAL SEQRES 26 B 866 PHE ASN THR LEU ARG SER LEU TYR LYS ASP LYS GLU LYS SEQRES 27 B 866 VAL ALA ILE ILE GLU GLU LEU VAL VAL GLY TYR GLU THR SEQRES 28 B 866 SER LEU LYS SER CYS ARG LEU PHE ASN PRO ASN ASP ASP SEQRES 29 B 866 GLY LYS GLU GLU PRO PRO THR THR LEU LEU TRP VAL GLN SEQRES 30 B 866 TYR TYR LEU ALA GLN HIS TYR ASP LYS ILE GLY GLN PRO SEQRES 31 B 866 SER ILE ALA LEU GLU TYR ILE ASN THR ALA ILE GLU SER SEQRES 32 B 866 THR PRO THR LEU ILE GLU LEU PHE LEU VAL LYS ALA LYS SEQRES 33 B 866 ILE TYR LYS HIS ALA GLY ASN ILE LYS GLU ALA ALA ARG SEQRES 34 B 866 TRP MET ASP GLU ALA GLN ALA LEU ASP THR ALA ASP ARG SEQRES 35 B 866 PHE ILE ASN SER LYS CYS ALA LYS TYR MET LEU LYS ALA SEQRES 36 B 866 ASN LEU ILE LYS GLU ALA GLU GLU MET CYS SER LYS PHE SEQRES 37 B 866 THR ARG GLU GLY THR SER ALA VAL GLU ASN LEU ASN GLU SEQRES 38 B 866 MET GLN CYS MET TRP PHE GLN THR GLU CYS ALA GLN ALA SEQRES 39 B 866 TYR LYS ALA MET ASN LYS PHE GLY GLU ALA LEU LYS LYS SEQRES 40 B 866 CYS HIS GLU ILE GLU ARG HIS PHE ILE GLU ILE THR ASP SEQRES 41 B 866 ASP GLN PHE ASP PHE HIS THR TYR CYS MET ARG LYS ILE SEQRES 42 B 866 THR LEU ARG SER TYR VAL ASP LEU LEU LYS LEU GLU ASP SEQRES 43 B 866 VAL LEU ARG GLN HIS PRO PHE TYR PHE LYS ALA ALA ARG SEQRES 44 B 866 ILE ALA ILE GLU ILE TYR LEU LYS LEU HIS ASP ASN PRO SEQRES 45 B 866 LEU THR ASP GLU ASN LYS GLU HIS GLU ALA ASP THR ALA SEQRES 46 B 866 ASN MET SER ASP LYS GLU LEU LYS LYS LEU ARG ASN LYS SEQRES 47 B 866 GLN ARG ARG ALA GLN LYS LYS ALA GLN ILE GLU GLU GLU SEQRES 48 B 866 LYS LYS ASN ALA GLU LYS GLU LYS GLN GLN ARG ASN GLN SEQRES 49 B 866 LYS LYS LYS LYS ASP ASP ASP ASP GLU GLU ILE GLY GLY SEQRES 50 B 866 PRO LYS GLU GLU LEU ILE PRO GLU LYS LEU ALA LYS VAL SEQRES 51 B 866 GLU THR PRO LEU GLU GLU ALA ILE LYS PHE LEU THR PRO SEQRES 52 B 866 LEU LYS ASN LEU VAL LYS ASN LYS ILE GLU THR HIS LEU SEQRES 53 B 866 PHE ALA PHE GLU ILE TYR PHE ARG LYS GLU LYS PHE LEU SEQRES 54 B 866 LEU MET LEU GLN SER VAL LYS ARG ALA PHE ALA ILE ASP SEQRES 55 B 866 SER SER HIS PRO TRP LEU HIS GLU CYS MET ILE ARG LEU SEQRES 56 B 866 PHE ASN THR ALA VAL CYS GLU SER LYS ASP LEU SER ASP SEQRES 57 B 866 THR VAL ARG THR VAL LEU LYS GLN GLU MET ASN ARG LEU SEQRES 58 B 866 PHE GLY ALA THR ASN PRO LYS ASN PHE ASN GLU THR PHE SEQRES 59 B 866 LEU LYS ARG ASN SER ASP SER LEU PRO HIS ARG LEU SER SEQRES 60 B 866 ALA ALA LYS MET VAL TYR TYR LEU ASP PRO SER SER GLN SEQRES 61 B 866 LYS ARG ALA ILE GLU LEU ALA THR THR LEU ASP GLU SER SEQRES 62 B 866 LEU THR ASN ARG ASN LEU GLN THR CYS MET GLU VAL LEU SEQRES 63 B 866 GLU ALA LEU TYR ASP GLY SER LEU GLY ASP CYS LYS GLU SEQRES 64 B 866 ALA ALA GLU ILE TYR ARG ALA ASN CYS HIS LYS LEU PHE SEQRES 65 B 866 PRO TYR ALA LEU ALA PHE MET PRO PRO GLY TYR GLU GLU SEQRES 66 B 866 ASP MET LYS ILE THR VAL ASN GLY ASP SER SER ALA GLU SEQRES 67 B 866 ALA GLU GLU LEU ALA ASN GLU ILE SEQRES 1 C 236 ACE MET ASN ILE ARG ASN ALA ARG PRO GLU ASP LEU MET SEQRES 2 C 236 ASN MET GLN HIS CYS ASN LEU LEU CYS LEU PRO GLU ASN SEQRES 3 C 236 TYR GLN MET LYS TYR TYR PHE TYR HIS GLY LEU SER TRP SEQRES 4 C 236 PRO GLN LEU SER TYR ILE ALA GLU ASP GLU ASN GLY LYS SEQRES 5 C 236 ILE VAL GLY TYR VAL LEU ALA LYS MET GLU GLU ASP PRO SEQRES 6 C 236 ASP ASP VAL PRO HIS GLY HIS ILE THR SER LEU ALA VAL SEQRES 7 C 236 LYS ARG SER HIS ARG ARG LEU GLY LEU ALA GLN LYS LEU SEQRES 8 C 236 MET ASP GLN ALA SER ARG ALA MET ILE GLU ASN PHE ASN SEQRES 9 C 236 ALA LYS TYR VAL SER LEU HIS VAL ARG LYS SER ASN ARG SEQRES 10 C 236 ALA ALA LEU HIS LEU TYR SER ASN THR LEU ASN PHE GLN SEQRES 11 C 236 ILE SER GLU VAL GLU PRO LYS TYR TYR ALA ASP GLY GLU SEQRES 12 C 236 ASP ALA TYR ALA MET LYS ARG ASP LEU THR GLN MET ALA SEQRES 13 C 236 ASP GLU LEU ARG ARG HIS LEU GLU LEU LYS GLU LYS GLY SEQRES 14 C 236 ARG HIS VAL VAL LEU GLY ALA ILE GLU ASN LYS VAL GLU SEQRES 15 C 236 SER LYS GLY ASN SER PRO PRO SER SER GLY GLU ALA CYS SEQRES 16 C 236 ARG GLU GLU LYS GLY LEU ALA ALA GLU ASP SER GLY GLY SEQRES 17 C 236 ASP SER LYS ASP LEU SER GLU VAL SER GLU THR THR GLU SEQRES 18 C 236 SER THR ASP VAL LYS ASP SER SER GLU ALA SER ASP SER SEQRES 19 C 236 ALA SER HET ACE C 0 3 HET ACO A 201 51 HET IHP B 901 36 HET ACO C 901 51 HETNAM ACE ACETYL GROUP HETNAM ACO ACETYL COENZYME *A HETNAM IHP INOSITOL HEXAKISPHOSPHATE HETSYN IHP MYO-INOSITOL HEXAKISPHOSPHATE; INOSITOL 1,2,3,4,5,6- HETSYN 2 IHP HEXAKISPHOSPHATE FORMUL 3 ACE C2 H4 O FORMUL 4 ACO 2(C23 H38 N7 O17 P3 S) FORMUL 5 IHP C6 H18 O24 P6 HELIX 1 AA1 ASN A 15 PHE A 27 1 13 HELIX 2 AA2 ASN A 32 VAL A 39 1 8 HELIX 3 AA3 LEU A 40 VAL A 42 5 3 HELIX 4 AA4 ALA A 81 ARG A 84 5 4 HELIX 5 AA5 GLY A 87 GLY A 104 1 18 HELIX 6 AA6 ASN A 117 ARG A 125 1 9 HELIX 7 AA7 LYS A 126 GLY A 128 5 3 HELIX 8 AA8 LEU B 117 ARG B 128 1 12 HELIX 9 AA9 ASP B 129 GLN B 142 1 14 HELIX 10 AB1 GLN B 147 LEU B 160 1 14 HELIX 11 AB2 ASP B 163 LYS B 176 1 14 HELIX 12 AB3 VAL B 185 ALA B 203 1 19 HELIX 13 AB4 LEU B 205 GLU B 217 1 13 HELIX 14 AB5 ASP B 222 LEU B 237 1 16 HELIX 15 AB6 ARG B 239 ASN B 254 1 16 HELIX 16 AB7 TRP B 258 LYS B 269 1 12 HELIX 17 AB8 ASN B 272 TYR B 287 1 16 HELIX 18 AB9 LEU B 291 LEU B 296 1 6 HELIX 19 AC1 PRO B 297 PHE B 300 5 4 HELIX 20 AC2 GLY B 303 GLY B 321 1 19 HELIX 21 AC3 PRO B 324 LEU B 329 1 6 HELIX 22 AC4 ARG B 330 LYS B 334 5 5 HELIX 23 AC5 ASP B 335 LYS B 354 1 20 HELIX 24 AC6 PRO B 369 GLY B 388 1 20 HELIX 25 AC7 GLN B 389 GLU B 402 1 14 HELIX 26 AC8 ILE B 408 GLY B 422 1 15 HELIX 27 AC9 ASN B 423 ASP B 438 1 16 HELIX 28 AD1 ARG B 442 ALA B 455 1 14 HELIX 29 AD2 LEU B 457 SER B 466 1 10 HELIX 30 AD3 LYS B 467 THR B 469 5 3 HELIX 31 AD4 SER B 474 MET B 482 1 9 HELIX 32 AD5 TRP B 486 MET B 498 1 13 HELIX 33 AD6 LYS B 500 ASP B 520 1 21 HELIX 34 AD7 ASP B 521 PHE B 525 5 5 HELIX 35 AD8 THR B 527 LYS B 532 1 6 HELIX 36 AD9 THR B 534 GLU B 545 1 12 HELIX 37 AE1 ASP B 546 GLN B 550 5 5 HELIX 38 AE2 HIS B 551 ASN B 571 1 21 HELIX 39 AE3 ILE B 643 LYS B 649 1 7 HELIX 40 AE4 THR B 652 ILE B 658 1 7 HELIX 41 AE5 LEU B 661 VAL B 668 1 8 HELIX 42 AE6 LYS B 671 ARG B 684 1 14 HELIX 43 AE7 LYS B 687 ALA B 700 1 14 HELIX 44 AE8 HIS B 705 CYS B 721 1 17 HELIX 45 AE9 SER B 727 PHE B 742 1 16 HELIX 46 AF1 ASN B 746 ASN B 758 1 13 HELIX 47 AF2 SER B 761 LEU B 775 1 15 HELIX 48 AF3 SER B 779 THR B 788 1 10 HELIX 49 AF4 ASN B 798 GLU B 807 1 10 HELIX 50 AF5 GLU B 819 PHE B 832 1 14 HELIX 51 AF6 ARG C 7 GLU C 9 5 3 HELIX 52 AF7 ASP C 10 CYS C 21 1 12 HELIX 53 AF8 GLN C 27 GLY C 35 1 9 HELIX 54 AF9 TRP C 38 LEU C 41 5 4 HELIX 55 AG1 ARG C 79 ARG C 82 5 4 HELIX 56 AG2 ALA C 87 ASN C 103 1 17 HELIX 57 AG3 ASN C 115 SER C 123 1 9 HELIX 58 AG4 THR C 152 ARG C 160 1 9 SHEET 1 AA1 7 ILE A 6 ASP A 10 0 SHEET 2 AA1 7 LYS A 47 PHE A 51 -1 O LEU A 48 N GLY A 9 SHEET 3 AA1 7 ILE A 54 SER A 66 -1 O GLY A 57 N ALA A 49 SHEET 4 AA1 7 GLN A 69 CYS A 79 -1 O ARG A 71 N ASP A 64 SHEET 5 AA1 7 ASN A 108 GLN A 114 1 O TYR A 110 N ILE A 74 SHEET 6 AA1 7 ALA A 147 ASN A 153 -1 O LEU A 150 N LEU A 111 SHEET 7 AA1 7 GLU A 130 LYS A 135 -1 N LYS A 135 O ALA A 147 SHEET 1 AA2 7 ASN C 2 ASN C 5 0 SHEET 2 AA2 7 TYR C 43 GLU C 46 -1 O ILE C 44 N ARG C 4 SHEET 3 AA2 7 ILE C 52 GLU C 61 -1 O VAL C 56 N TYR C 43 SHEET 4 AA2 7 HIS C 69 VAL C 77 -1 O HIS C 71 N LYS C 59 SHEET 5 AA2 7 TYR C 106 ARG C 112 1 O TYR C 106 N GLY C 70 SHEET 6 AA2 7 ALA C 144 ASP C 150 -1 O TYR C 145 N VAL C 111 SHEET 7 AA2 7 GLN C 129 GLU C 134 -1 N GLN C 129 O LYS C 148 LINK C ACE C 0 N MET C 1 1555 1555 1.33 SITE 1 AC1 18 ILE A 26 LEU A 77 GLY A 78 CYS A 79 SITE 2 AC1 18 ARG A 84 ARG A 85 LEU A 86 GLY A 87 SITE 3 AC1 18 ILE A 88 GLY A 89 THR A 90 HIS A 112 SITE 4 AC1 18 VAL A 113 GLN A 114 ASN A 117 SER A 119 SITE 5 AC1 18 PHE A 123 LYS A 126 SITE 1 AC2 11 LYS B 416 LYS B 419 HIS B 420 LYS B 447 SITE 2 AC2 11 LYS B 450 TYR B 451 LYS B 556 HIS C 16 SITE 3 AC2 11 LYS C 51 LYS C 78 SER C 80 SITE 1 AC3 16 ASP A 53 LEU C 22 LEU C 75 ALA C 76 SITE 2 AC3 16 VAL C 77 ARG C 82 ARG C 83 GLY C 85 SITE 3 AC3 16 LEU C 86 ALA C 87 GLN C 88 ALA C 117 SITE 4 AC3 16 HIS C 120 LEU C 121 TYR C 122 THR C 125 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000