HEADER APOPTOSIS 08-JUL-19 6PPM TITLE ANCESTRAL CASPASE 6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANCESTRAL CASPASE-6 LARGE SUBUNIT; COMPND 3 CHAIN: A, G, C, J; COMPND 4 EC: 3.4.22.59; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ANCESTRAL CASPASE-6 SMALL SUBUNIT; COMPND 8 CHAIN: B, H, D, K; COMPND 9 EC: 3.4.22.59; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: VAL-GLU-ILE-ASP INHIBITOR; COMPND 13 CHAIN: E, I, L, F; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CASP6, MCH2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: CASP6, MCH2; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ANCESTRAL EFFECTOR CASPASE, PROTEASE, ANCESTRAL PROTEIN KEYWDS 2 RECONSTRUCTION, APOPTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR A.C.CLARK REVDAT 4 11-OCT-23 6PPM 1 REMARK REVDAT 3 01-JAN-20 6PPM 1 REMARK REVDAT 2 04-DEC-19 6PPM 1 JRNL REVDAT 1 13-NOV-19 6PPM 0 JRNL AUTH R.D.GRINSHPON,S.SHRESTHA,J.TITUS-MCQUILLAN,P.T.HAMILTON, JRNL AUTH 2 P.D.SWARTZ,A.C.CLARK JRNL TITL RESURRECTION OF ANCESTRAL EFFECTOR CASPASES IDENTIFIES NOVEL JRNL TITL 2 NETWORKS FOR EVOLUTION OF SUBSTRATE SPECIFICITY. JRNL REF BIOCHEM.J. V. 476 3475 2019 JRNL REFN ESSN 1470-8728 JRNL PMID 31675069 JRNL DOI 10.1042/BCJ20190625 REMARK 2 REMARK 2 RESOLUTION. 2.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 32724 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.2400 - 6.2800 0.99 2346 151 0.1780 0.1992 REMARK 3 2 6.2800 - 4.9900 1.00 2246 149 0.1736 0.2229 REMARK 3 3 4.9900 - 4.3600 1.00 2225 142 0.1328 0.1748 REMARK 3 4 4.3600 - 3.9600 1.00 2214 143 0.1446 0.2549 REMARK 3 5 3.9600 - 3.6800 1.00 2201 142 0.1576 0.2360 REMARK 3 6 3.6800 - 3.4600 1.00 2209 142 0.1610 0.2321 REMARK 3 7 3.4600 - 3.2900 1.00 2171 143 0.1921 0.3041 REMARK 3 8 3.2900 - 3.1400 1.00 2176 143 0.2168 0.3272 REMARK 3 9 3.1400 - 3.0200 1.00 2187 137 0.2140 0.3055 REMARK 3 10 3.0200 - 2.9200 1.00 2159 150 0.2190 0.3035 REMARK 3 11 2.9200 - 2.8300 1.00 2169 137 0.2276 0.3434 REMARK 3 12 2.8300 - 2.7500 1.00 2178 146 0.2341 0.3019 REMARK 3 13 2.7500 - 2.6700 1.00 2177 137 0.2454 0.4212 REMARK 3 14 2.6700 - 2.6100 0.97 2067 137 0.2560 0.3587 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.344 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.762 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 7749 REMARK 3 ANGLE : 0.911 10465 REMARK 3 CHIRALITY : 0.050 1153 REMARK 3 PLANARITY : 0.005 1349 REMARK 3 DIHEDRAL : 7.686 5329 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6PPM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1000242855. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32724 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.610 REMARK 200 RESOLUTION RANGE LOW (A) : 42.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2J30 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM FLUORIDE, PH 6.2, 20% REMARK 280 PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 42.15700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.51300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.27100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.51300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.15700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.27100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: J, K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL B 195 REMARK 465 VAL H 197 REMARK 465 PHE C 25 REMARK 465 TYR C 26 REMARK 465 LYS C 27 REMARK 465 ARG C 28 REMARK 465 GLU C 29 REMARK 465 MET C 30 REMARK 465 ARG D 220 REMARK 465 PHE J 25 REMARK 465 TYR J 26 REMARK 465 LYS J 27 REMARK 465 ARG J 28 REMARK 465 GLU J 29 REMARK 465 MET J 30 REMARK 465 PHE J 31 REMARK 465 VAL K 197 REMARK 465 ASN K 263 REMARK 465 CYS K 264 REMARK 465 LYS K 265 REMARK 465 ASP K 266 REMARK 465 PRO K 267 REMARK 465 ALA K 268 REMARK 465 GLU F 302 REMARK 465 ILE F 303 REMARK 465 ASP F 304 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 27 CD CE NZ REMARK 470 ARG A 28 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 29 CG CD OE1 OE2 REMARK 470 GLU A 35 CG CD OE1 OE2 REMARK 470 LYS A 38 CG CD CE NZ REMARK 470 LYS A 42 CG CD CE NZ REMARK 470 LYS A 58 CG CD CE NZ REMARK 470 LYS A 69 CG CD CE NZ REMARK 470 GLU A 102 CD OE1 OE2 REMARK 470 ASP A 124 CG OD1 OD2 REMARK 470 LYS A 167 CD CE NZ REMARK 470 LYS B 235 CD CE NZ REMARK 470 LYS B 236 CG CD CE NZ REMARK 470 GLU B 240 CG CD OE1 OE2 REMARK 470 LYS B 263 CG CD CE NZ REMARK 470 GLU G 29 CG CD OE1 OE2 REMARK 470 LYS G 38 CG CD CE NZ REMARK 470 LYS G 62 CD CE NZ REMARK 470 LYS G 69 CD CE NZ REMARK 470 ARG G 76 CG CD NE CZ NH1 NH2 REMARK 470 GLU G 80 CG CD OE1 OE2 REMARK 470 LYS G 86 CD CE NZ REMARK 470 GLU G 94 CG CD OE1 OE2 REMARK 470 GLU G 98 CG CD OE1 OE2 REMARK 470 LYS G 133 CD CE NZ REMARK 470 GLU G 135 CD OE1 OE2 REMARK 470 GLN G 137 CD OE1 NE2 REMARK 470 LYS G 147 CE NZ REMARK 470 MET G 175 CG SD CE REMARK 470 GLU H 242 CD OE1 OE2 REMARK 470 ARG H 254 NE CZ NH1 NH2 REMARK 470 LYS C 38 CG CD CE NZ REMARK 470 LYS C 42 CD CE NZ REMARK 470 LYS C 53 CG CD CE NZ REMARK 470 ARG C 54 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 58 CD CE NZ REMARK 470 LYS C 62 CD CE NZ REMARK 470 LYS C 69 CG CD CE NZ REMARK 470 ARG C 76 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 80 CG CD OE1 OE2 REMARK 470 LYS C 86 CG CD CE NZ REMARK 470 GLU C 94 CG CD OE1 OE2 REMARK 470 GLU C 98 CG CD OE1 OE2 REMARK 470 GLU C 102 CG CD OE1 OE2 REMARK 470 GLN C 149 CD OE1 NE2 REMARK 470 LYS C 167 CG CD CE NZ REMARK 470 GLU D 214 CD OE1 OE2 REMARK 470 ASN D 224 CG OD1 ND2 REMARK 470 SER D 226 OG REMARK 470 ARG D 259 CZ NH1 NH2 REMARK 470 LYS D 265 CD CE NZ REMARK 470 GLU J 35 CG CD OE1 OE2 REMARK 470 LYS J 38 CG CD CE NZ REMARK 470 LYS J 42 CG CD CE NZ REMARK 470 LYS J 53 CG CD CE NZ REMARK 470 LYS J 62 CG CD CE NZ REMARK 470 ASP J 68 CG OD1 OD2 REMARK 470 LYS J 69 CD CE NZ REMARK 470 GLU J 75 CG CD OE1 OE2 REMARK 470 ARG J 76 CG CD NE CZ NH1 NH2 REMARK 470 GLU J 80 CG CD OE1 OE2 REMARK 470 GLU J 84 CG CD OE1 OE2 REMARK 470 LYS J 86 CD CE NZ REMARK 470 GLU J 94 CG CD OE1 OE2 REMARK 470 LYS J 99 CG CD CE NZ REMARK 470 GLN J 101 CD OE1 NE2 REMARK 470 GLU J 102 CG CD OE1 OE2 REMARK 470 GLU J 123 CG CD OE1 OE2 REMARK 470 ASP J 124 CG OD1 OD2 REMARK 470 GLU J 135 CD OE1 OE2 REMARK 470 GLU K 214 CG CD OE1 OE2 REMARK 470 LYS K 237 CD CE NZ REMARK 470 LYS K 238 CG CD CE NZ REMARK 470 GLU K 242 CG CD OE1 OE2 REMARK 470 GLU K 247 CD OE1 OE2 REMARK 470 LYS K 291 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ILE B 227 CA CB CG1 CG2 CD1 REMARK 480 LEU J 119 CA CB CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 107 OG SER A 109 2.06 REMARK 500 OE1 GLU D 244 OG1 THR D 246 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 113 -164.58 -175.16 REMARK 500 ASP A 124 -122.36 44.61 REMARK 500 PHE B 286 50.82 -112.18 REMARK 500 MET G 39 37.05 -96.77 REMARK 500 ASN G 40 58.57 -116.68 REMARK 500 ALA G 106 170.39 -57.75 REMARK 500 ASP G 124 107.30 -51.94 REMARK 500 ASP G 131 -8.61 -142.39 REMARK 500 CYS G 148 83.14 -152.92 REMARK 500 PHE H 288 51.33 -119.79 REMARK 500 MET C 39 56.05 -113.23 REMARK 500 CYS C 113 -176.73 -174.70 REMARK 500 SER C 120 -173.82 -172.98 REMARK 500 THR D 222 83.89 -57.87 REMARK 500 VAL D 223 -49.18 61.76 REMARK 500 PHE D 288 59.68 -115.68 REMARK 500 ALA J 34 30.96 -143.48 REMARK 500 LYS J 38 99.62 -64.01 REMARK 500 MET J 39 48.67 -106.72 REMARK 500 ALA J 106 -176.70 -69.50 REMARK 500 CYS J 113 -177.66 177.31 REMARK 500 ASP J 131 -23.21 -140.17 REMARK 500 CYS J 148 88.93 -166.87 REMARK 500 ALA J 162 145.67 -174.82 REMARK 500 PHE K 288 56.39 -115.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VAL D 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6PDQ RELATED DB: PDB REMARK 900 6PDQ IS ANOTHER ANCESTRAL CASPASE IN SAME PUBLICATION DBREF 6PPM A 25 175 PDB 6PPM 6PPM 25 175 DBREF 6PPM B 195 289 PDB 6PPM 6PPM 195 289 DBREF 6PPM E 301 304 PDB 6PPM 6PPM 301 304 DBREF 6PPM G 25 175 PDB 6PPM 6PPM 25 175 DBREF 6PPM H 197 291 PDB 6PPM 6PPM 197 291 DBREF 6PPM I 301 304 PDB 6PPM 6PPM 301 304 DBREF 6PPM C 25 175 PDB 6PPM 6PPM 25 175 DBREF 6PPM D 197 291 PDB 6PPM 6PPM 197 291 DBREF 6PPM J 25 175 PDB 6PPM 6PPM 25 175 DBREF 6PPM K 197 291 PDB 6PPM 6PPM 197 291 DBREF 6PPM L 301 304 PDB 6PPM 6PPM 301 304 DBREF 6PPM F 301 304 PDB 6PPM 6PPM 301 304 SEQRES 1 A 151 PHE TYR LYS ARG GLU MET PHE ASP PRO ALA GLU GLU TYR SEQRES 2 A 151 LYS MET ASN HIS LYS ARG ARG GLY LEU ALA LEU ILE PHE SEQRES 3 A 151 ASN GLN LYS ARG PHE ASP TRP LYS LEU GLY LEU LYS THR SEQRES 4 A 151 ARG ASN GLY THR ASP LYS ASP ARG ASP ASN LEU GLU ARG SEQRES 5 A 151 ARG PHE GLN GLU LEU GLY PHE GLU VAL LYS ALA TYR ASN SEQRES 6 A 151 ASP LEU SER ALA GLU GLU VAL LEU GLU LYS ILE GLN GLU SEQRES 7 A 151 ALA SER THR ALA ASP HIS SER ASP ALA ASP CYS PHE VAL SEQRES 8 A 151 CYS VAL PHE LEU SER HIS GLY GLU ASP GLY HIS VAL TYR SEQRES 9 A 151 ALA ASN ASP ALA LYS ILE GLU ILE GLN GLU LEU THR ASN SEQRES 10 A 151 LEU PHE LYS GLY ASP LYS CYS GLN SER LEU VAL GLY LYS SEQRES 11 A 151 PRO LYS ILE PHE ILE ILE GLN ALA CYS ARG GLY ASP LYS SEQRES 12 A 151 LEU ASP ASP ALA VAL THR PRO MET SEQRES 1 B 95 VAL TYR THR LEU PRO ALA GLY ALA ASP PHE ILE MET CYS SEQRES 2 B 95 TYR SER THR ALA GLU GLY TYR TYR SER TYR ARG GLU THR SEQRES 3 B 95 VAL ASN GLY SER TRP TYR ILE GLN ASP LEU CYS GLU MET SEQRES 4 B 95 LEU LYS LYS TYR GLY SER GLU LEU GLU PHE THR GLU ILE SEQRES 5 B 95 LEU THR LEU VAL ASN ARG LYS VAL SER LEU ARG SER VAL SEQRES 6 B 95 PRO ASN CYS LYS ASP PRO ALA ALA ILE GLY LYS LYS GLN SEQRES 7 B 95 MET PRO CYS PHE ALA SER MET LEU THR LYS LYS LEU TYR SEQRES 8 B 95 PHE ARG PRO LYS SEQRES 1 E 4 VAL GLU ILE ASP SEQRES 1 G 151 PHE TYR LYS ARG GLU MET PHE ASP PRO ALA GLU GLU TYR SEQRES 2 G 151 LYS MET ASN HIS LYS ARG ARG GLY LEU ALA LEU ILE PHE SEQRES 3 G 151 ASN GLN LYS ARG PHE ASP TRP LYS LEU GLY LEU LYS THR SEQRES 4 G 151 ARG ASN GLY THR ASP LYS ASP ARG ASP ASN LEU GLU ARG SEQRES 5 G 151 ARG PHE GLN GLU LEU GLY PHE GLU VAL LYS ALA TYR ASN SEQRES 6 G 151 ASP LEU SER ALA GLU GLU VAL LEU GLU LYS ILE GLN GLU SEQRES 7 G 151 ALA SER THR ALA ASP HIS SER ASP ALA ASP CYS PHE VAL SEQRES 8 G 151 CYS VAL PHE LEU SER HIS GLY GLU ASP GLY HIS VAL TYR SEQRES 9 G 151 ALA ASN ASP ALA LYS ILE GLU ILE GLN GLU LEU THR ASN SEQRES 10 G 151 LEU PHE LYS GLY ASP LYS CYS GLN SER LEU VAL GLY LYS SEQRES 11 G 151 PRO LYS ILE PHE ILE ILE GLN ALA CYS ARG GLY ASP LYS SEQRES 12 G 151 LEU ASP ASP ALA VAL THR PRO MET SEQRES 1 H 95 VAL TYR THR LEU PRO ALA GLY ALA ASP PHE ILE MET CYS SEQRES 2 H 95 TYR SER THR ALA GLU GLY TYR TYR SER TYR ARG GLU THR SEQRES 3 H 95 VAL ASN GLY SER TRP TYR ILE GLN ASP LEU CYS GLU MET SEQRES 4 H 95 LEU LYS LYS TYR GLY SER GLU LEU GLU PHE THR GLU ILE SEQRES 5 H 95 LEU THR LEU VAL ASN ARG LYS VAL SER LEU ARG SER VAL SEQRES 6 H 95 PRO ASN CYS LYS ASP PRO ALA ALA ILE GLY LYS LYS GLN SEQRES 7 H 95 MET PRO CYS PHE ALA SER MET LEU THR LYS LYS LEU TYR SEQRES 8 H 95 PHE ARG PRO LYS SEQRES 1 I 4 VAL GLU ILE ASP SEQRES 1 C 151 PHE TYR LYS ARG GLU MET PHE ASP PRO ALA GLU GLU TYR SEQRES 2 C 151 LYS MET ASN HIS LYS ARG ARG GLY LEU ALA LEU ILE PHE SEQRES 3 C 151 ASN GLN LYS ARG PHE ASP TRP LYS LEU GLY LEU LYS THR SEQRES 4 C 151 ARG ASN GLY THR ASP LYS ASP ARG ASP ASN LEU GLU ARG SEQRES 5 C 151 ARG PHE GLN GLU LEU GLY PHE GLU VAL LYS ALA TYR ASN SEQRES 6 C 151 ASP LEU SER ALA GLU GLU VAL LEU GLU LYS ILE GLN GLU SEQRES 7 C 151 ALA SER THR ALA ASP HIS SER ASP ALA ASP CYS PHE VAL SEQRES 8 C 151 CYS VAL PHE LEU SER HIS GLY GLU ASP GLY HIS VAL TYR SEQRES 9 C 151 ALA ASN ASP ALA LYS ILE GLU ILE GLN GLU LEU THR ASN SEQRES 10 C 151 LEU PHE LYS GLY ASP LYS CYS GLN SER LEU VAL GLY LYS SEQRES 11 C 151 PRO LYS ILE PHE ILE ILE GLN ALA CYS ARG GLY ASP LYS SEQRES 12 C 151 LEU ASP ASP ALA VAL THR PRO MET SEQRES 1 D 95 VAL TYR THR LEU PRO ALA GLY ALA ASP PHE ILE MET CYS SEQRES 2 D 95 TYR SER THR ALA GLU GLY TYR TYR SER TYR ARG GLU THR SEQRES 3 D 95 VAL ASN GLY SER TRP TYR ILE GLN ASP LEU CYS GLU MET SEQRES 4 D 95 LEU LYS LYS TYR GLY SER GLU LEU GLU PHE THR GLU ILE SEQRES 5 D 95 LEU THR LEU VAL ASN ARG LYS VAL SER LEU ARG SER VAL SEQRES 6 D 95 PRO ASN CYS LYS ASP PRO ALA ALA ILE GLY LYS LYS GLN SEQRES 7 D 95 MET PRO CYS PHE ALA SER MET LEU THR LYS LYS LEU TYR SEQRES 8 D 95 PHE ARG PRO LYS SEQRES 1 J 151 PHE TYR LYS ARG GLU MET PHE ASP PRO ALA GLU GLU TYR SEQRES 2 J 151 LYS MET ASN HIS LYS ARG ARG GLY LEU ALA LEU ILE PHE SEQRES 3 J 151 ASN GLN LYS ARG PHE ASP TRP LYS LEU GLY LEU LYS THR SEQRES 4 J 151 ARG ASN GLY THR ASP LYS ASP ARG ASP ASN LEU GLU ARG SEQRES 5 J 151 ARG PHE GLN GLU LEU GLY PHE GLU VAL LYS ALA TYR ASN SEQRES 6 J 151 ASP LEU SER ALA GLU GLU VAL LEU GLU LYS ILE GLN GLU SEQRES 7 J 151 ALA SER THR ALA ASP HIS SER ASP ALA ASP CYS PHE VAL SEQRES 8 J 151 CYS VAL PHE LEU SER HIS GLY GLU ASP GLY HIS VAL TYR SEQRES 9 J 151 ALA ASN ASP ALA LYS ILE GLU ILE GLN GLU LEU THR ASN SEQRES 10 J 151 LEU PHE LYS GLY ASP LYS CYS GLN SER LEU VAL GLY LYS SEQRES 11 J 151 PRO LYS ILE PHE ILE ILE GLN ALA CYS ARG GLY ASP LYS SEQRES 12 J 151 LEU ASP ASP ALA VAL THR PRO MET SEQRES 1 K 95 VAL TYR THR LEU PRO ALA GLY ALA ASP PHE ILE MET CYS SEQRES 2 K 95 TYR SER THR ALA GLU GLY TYR TYR SER TYR ARG GLU THR SEQRES 3 K 95 VAL ASN GLY SER TRP TYR ILE GLN ASP LEU CYS GLU MET SEQRES 4 K 95 LEU LYS LYS TYR GLY SER GLU LEU GLU PHE THR GLU ILE SEQRES 5 K 95 LEU THR LEU VAL ASN ARG LYS VAL SER LEU ARG SER VAL SEQRES 6 K 95 PRO ASN CYS LYS ASP PRO ALA ALA ILE GLY LYS LYS GLN SEQRES 7 K 95 MET PRO CYS PHE ALA SER MET LEU THR LYS LYS LEU TYR SEQRES 8 K 95 PHE ARG PRO LYS SEQRES 1 L 4 VAL GLU ILE ASP SEQRES 1 F 4 VAL GLU ILE ASP FORMUL 13 HOH *100(H2 O) HELIX 1 AA1 GLY A 66 LEU A 81 1 16 HELIX 2 AA2 SER A 92 THR A 105 1 14 HELIX 3 AA3 ILE A 136 LEU A 142 1 7 HELIX 4 AA4 CYS A 148 VAL A 152 5 5 HELIX 5 AA5 TRP B 225 GLY B 238 1 14 HELIX 6 AA6 GLU B 242 LEU B 256 1 15 HELIX 7 AA7 ASP B 264 ILE B 268 5 5 HELIX 8 AA8 ASP G 56 GLY G 60 5 5 HELIX 9 AA9 GLY G 66 LEU G 81 1 16 HELIX 10 AB1 SER G 92 ALA G 106 1 15 HELIX 11 AB2 ILE G 136 ASN G 141 1 6 HELIX 12 AB3 LEU G 142 LYS G 144 5 3 HELIX 13 AB4 CYS G 148 VAL G 152 5 5 HELIX 14 AB5 TRP H 227 GLY H 240 1 14 HELIX 15 AB6 GLU H 244 ARG H 259 1 16 HELIX 16 AB7 ASP H 266 ILE H 270 5 5 HELIX 17 AB8 ASP C 56 GLY C 60 5 5 HELIX 18 AB9 GLY C 66 LEU C 81 1 16 HELIX 19 AC1 SER C 92 THR C 105 1 14 HELIX 20 AC2 ILE C 136 LEU C 142 1 7 HELIX 21 AC3 CYS C 148 VAL C 152 5 5 HELIX 22 AC4 SER D 226 GLY D 240 1 15 HELIX 23 AC5 GLU D 244 LEU D 258 1 15 HELIX 24 AC6 ASP J 56 GLY J 60 5 5 HELIX 25 AC7 GLY J 66 LEU J 81 1 16 HELIX 26 AC8 SER J 92 ALA J 106 1 15 HELIX 27 AC9 ILE J 136 LEU J 142 1 7 HELIX 28 AD1 CYS J 148 VAL J 152 5 5 HELIX 29 AD2 TRP K 227 GLY K 240 1 14 HELIX 30 AD3 GLU K 244 LEU K 258 1 15 SHEET 1 AA112 GLU A 84 ASN A 89 0 SHEET 2 AA112 LEU A 46 ASN A 51 1 N ILE A 49 O TYR A 88 SHEET 3 AA112 PHE A 114 LEU A 119 1 O LEU A 119 N PHE A 50 SHEET 4 AA112 LYS A 156 GLN A 161 1 O ILE A 157 N PHE A 114 SHEET 5 AA112 PHE B 204 TYR B 208 1 O CYS B 207 N PHE A 158 SHEET 6 AA112 CYS B 275 SER B 278 -1 O ALA B 277 N MET B 206 SHEET 7 AA112 CYS D 277 SER D 280 -1 O SER D 280 N PHE B 276 SHEET 8 AA112 PHE D 206 TYR D 210 -1 N TYR D 210 O CYS D 277 SHEET 9 AA112 LYS C 156 GLN C 161 1 N PHE C 158 O CYS D 209 SHEET 10 AA112 PHE C 114 LEU C 119 1 N CYS C 116 O ILE C 159 SHEET 11 AA112 LEU C 46 ASN C 51 1 N LEU C 48 O VAL C 117 SHEET 12 AA112 GLU C 84 ASN C 89 1 O TYR C 88 N ILE C 49 SHEET 1 AA2 3 GLY A 122 GLU A 123 0 SHEET 2 AA2 3 HIS A 126 TYR A 128 -1 O HIS A 126 N GLU A 123 SHEET 3 AA2 3 LYS A 133 GLU A 135 -1 O ILE A 134 N VAL A 127 SHEET 1 AA3 2 ALA A 171 VAL A 172 0 SHEET 2 AA3 2 LEU D 200 PRO D 201 -1 O LEU D 200 N VAL A 172 SHEET 1 AA4 2 LEU B 198 PRO B 199 0 SHEET 2 AA4 2 ALA C 171 VAL C 172 -1 O VAL C 172 N LEU B 198 SHEET 1 AA5 3 GLY B 223 SER B 224 0 SHEET 2 AA5 3 TYR B 217 GLU B 219 -1 N GLU B 219 O GLY B 223 SHEET 3 AA5 3 GLU E 302 ILE E 303 -1 O GLU E 302 N ARG B 218 SHEET 1 AA6 6 GLU G 84 ASN G 89 0 SHEET 2 AA6 6 LEU G 46 ASN G 51 1 N ASN G 51 O TYR G 88 SHEET 3 AA6 6 PHE G 114 LEU G 119 1 O VAL G 117 N LEU G 48 SHEET 4 AA6 6 LYS G 156 GLN G 161 1 O ILE G 157 N PHE G 114 SHEET 5 AA6 6 PHE H 206 TYR H 210 1 O CYS H 209 N PHE G 158 SHEET 6 AA6 6 CYS H 277 SER H 280 -1 O ALA H 279 N MET H 208 SHEET 1 AA7 3 GLY G 122 GLU G 123 0 SHEET 2 AA7 3 HIS G 126 TYR G 128 -1 O HIS G 126 N GLU G 123 SHEET 3 AA7 3 LYS G 133 GLU G 135 -1 O ILE G 134 N VAL G 127 SHEET 1 AA8 3 GLY H 225 SER H 226 0 SHEET 2 AA8 3 TYR H 219 GLU H 221 -1 N GLU H 221 O GLY H 225 SHEET 3 AA8 3 GLU I 302 ILE I 303 -1 O GLU I 302 N ARG H 220 SHEET 1 AA9 2 HIS C 126 TYR C 128 0 SHEET 2 AA9 2 LYS C 133 GLU C 135 -1 O ILE C 134 N VAL C 127 SHEET 1 AB1 6 GLU J 84 ASN J 89 0 SHEET 2 AB1 6 LEU J 46 ASN J 51 1 N ILE J 49 O TYR J 88 SHEET 3 AB1 6 PHE J 114 LEU J 119 1 O VAL J 117 N LEU J 48 SHEET 4 AB1 6 LYS J 156 GLN J 161 1 O ILE J 157 N PHE J 114 SHEET 5 AB1 6 PHE K 206 TYR K 210 1 O CYS K 209 N PHE J 158 SHEET 6 AB1 6 CYS K 277 SER K 280 -1 O CYS K 277 N TYR K 210 SHEET 1 AB2 3 GLY J 122 GLU J 123 0 SHEET 2 AB2 3 HIS J 126 TYR J 128 -1 O HIS J 126 N GLU J 123 SHEET 3 AB2 3 LYS J 133 GLU J 135 -1 O ILE J 134 N VAL J 127 SHEET 1 AB3 3 GLY K 225 SER K 226 0 SHEET 2 AB3 3 TYR K 219 GLU K 221 -1 N GLU K 221 O GLY K 225 SHEET 3 AB3 3 GLU L 302 ILE L 303 -1 O GLU L 302 N ARG K 220 SITE 1 AC1 2 TYR D 219 GLU D 221 CRYST1 84.314 88.542 141.026 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011860 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011294 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007091 0.00000