HEADER RNA BINDING PROTEIN/RNA 08-JUL-19 6PPV TITLE STRUCTURE OF S. POMBE LSM1-7 WITH RNA, POLYURIDINE WITH 3' GUANOSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM2; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: PROBABLE U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: PROBABLE U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM4; COMPND 15 CHAIN: D; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 5; COMPND 18 MOLECULE: U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM5; COMPND 19 CHAIN: E; COMPND 20 ENGINEERED: YES; COMPND 21 MOL_ID: 6; COMPND 22 MOLECULE: U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM6; COMPND 23 CHAIN: F; COMPND 24 ENGINEERED: YES; COMPND 25 MOL_ID: 7; COMPND 26 MOLECULE: U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM7; COMPND 27 CHAIN: G; COMPND 28 ENGINEERED: YES; COMPND 29 MOL_ID: 8; COMPND 30 MOLECULE: RNA (5'-R(*AP*UP*UP*UP*UP*G)-3'); COMPND 31 CHAIN: H; COMPND 32 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE (STRAIN 972 / ATCC SOURCE 3 24843); SOURCE 4 ORGANISM_COMMON: FISSION YEAST; SOURCE 5 ORGANISM_TAXID: 284812; SOURCE 6 STRAIN: 972 / ATCC 24843; SOURCE 7 GENE: LSM1, SPBC3D6.08C; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE (STRAIN 972 / ATCC SOURCE 12 24843); SOURCE 13 ORGANISM_COMMON: FISSION YEAST; SOURCE 14 ORGANISM_TAXID: 284812; SOURCE 15 STRAIN: 972 / ATCC 24843; SOURCE 16 GENE: LSM2, SPCC1620.01C; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE (STRAIN 972 / ATCC SOURCE 21 24843); SOURCE 22 ORGANISM_COMMON: FISSION YEAST; SOURCE 23 ORGANISM_TAXID: 284812; SOURCE 24 STRAIN: 972 / ATCC 24843; SOURCE 25 GENE: LSM3, SPBC9B6.05C; SOURCE 26 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 27 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 28 MOL_ID: 4; SOURCE 29 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE (STRAIN 972 / ATCC SOURCE 30 24843); SOURCE 31 ORGANISM_COMMON: FISSION YEAST; SOURCE 32 ORGANISM_TAXID: 284812; SOURCE 33 STRAIN: 972 / ATCC 24843; SOURCE 34 GENE: LSM4, SPBC30D10.06; SOURCE 35 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 36 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 37 MOL_ID: 5; SOURCE 38 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE (STRAIN 972 / ATCC SOURCE 39 24843); SOURCE 40 ORGANISM_COMMON: FISSION YEAST; SOURCE 41 ORGANISM_TAXID: 284812; SOURCE 42 STRAIN: 972 / ATCC 24843; SOURCE 43 GENE: LSM5, SPBC20F10.09; SOURCE 44 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 45 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 46 MOL_ID: 6; SOURCE 47 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE (STRAIN 972 / ATCC SOURCE 48 24843); SOURCE 49 ORGANISM_COMMON: FISSION YEAST; SOURCE 50 ORGANISM_TAXID: 284812; SOURCE 51 STRAIN: 972 / ATCC 24843; SOURCE 52 GENE: LSM6, SPAC2F3.17C; SOURCE 53 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 54 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 55 MOL_ID: 7; SOURCE 56 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE (STRAIN 972 / ATCC SOURCE 57 24843); SOURCE 58 ORGANISM_COMMON: FISSION YEAST; SOURCE 59 ORGANISM_TAXID: 284812; SOURCE 60 STRAIN: 972 / ATCC 24843; SOURCE 61 GENE: LSM7, SPCC285.12; SOURCE 62 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 63 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 64 MOL_ID: 8; SOURCE 65 SYNTHETIC: YES; SOURCE 66 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 67 ORGANISM_TAXID: 32630 KEYWDS RNA, RNA BINDING PROTEIN, RNA BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.J.MONTEMAYOR,S.E.BUTCHER REVDAT 3 13-MAR-24 6PPV 1 REMARK REVDAT 2 30-SEP-20 6PPV 1 JRNL REVDAT 1 17-JUN-20 6PPV 0 JRNL AUTH E.J.MONTEMAYOR,J.M.VIRTA,S.M.HAYES,Y.NOMURA,D.A.BROW, JRNL AUTH 2 S.E.BUTCHER JRNL TITL MOLECULAR BASIS FOR THE DISTINCT CELLULAR FUNCTIONS OF THE JRNL TITL 2 LSM1-7 AND LSM2-8 COMPLEXES. JRNL REF RNA V. 26 1400 2020 JRNL REFN ESSN 1469-9001 JRNL PMID 32518066 JRNL DOI 10.1261/RNA.075879.120 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.420 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 52767 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.840 REMARK 3 FREE R VALUE TEST SET COUNT : 3798 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.0700 - 6.1400 1.00 3528 137 0.1929 0.1837 REMARK 3 2 6.1400 - 4.8800 1.00 3515 140 0.1824 0.2513 REMARK 3 3 4.8800 - 4.2600 1.00 3498 156 0.1440 0.1748 REMARK 3 4 4.2600 - 3.8700 1.00 3507 142 0.1730 0.2226 REMARK 3 5 3.8700 - 3.6000 1.00 3552 142 0.1891 0.1796 REMARK 3 6 3.6000 - 3.3800 1.00 3531 139 0.1914 0.2553 REMARK 3 7 3.3800 - 3.2100 1.00 3552 138 0.2075 0.2416 REMARK 3 8 3.2100 - 3.0700 1.00 3478 148 0.2155 0.2505 REMARK 3 9 3.0700 - 2.9600 1.00 3533 145 0.2198 0.2410 REMARK 3 10 2.9600 - 2.8500 1.00 3472 138 0.2165 0.2447 REMARK 3 11 2.8500 - 2.7700 1.00 3508 142 0.2184 0.2685 REMARK 3 12 2.7700 - 2.6900 1.00 3584 154 0.2333 0.3152 REMARK 3 13 2.6900 - 2.6200 1.00 3513 134 0.2436 0.2876 REMARK 3 14 2.6200 - 2.5500 1.00 3478 138 0.2464 0.3789 REMARK 3 15 2.5500 - 2.4900 1.00 3565 142 0.2610 0.3532 REMARK 3 16 2.4900 - 2.4400 1.00 3534 144 0.2497 0.2813 REMARK 3 17 2.4400 - 2.3900 1.00 3501 134 0.2519 0.2930 REMARK 3 18 2.3900 - 2.3500 1.00 3547 136 0.2676 0.2994 REMARK 3 19 2.3500 - 2.3000 1.00 3446 146 0.2697 0.3191 REMARK 3 20 2.3000 - 2.2700 1.00 3672 141 0.2928 0.3354 REMARK 3 21 2.2700 - 2.2300 1.00 3416 136 0.3029 0.3543 REMARK 3 22 2.2300 - 2.1900 1.00 3629 140 0.3081 0.3824 REMARK 3 23 2.1900 - 2.1600 1.00 3439 136 0.3351 0.3669 REMARK 3 24 2.1600 - 2.1300 1.00 3607 144 0.3339 0.3999 REMARK 3 25 2.1300 - 2.1000 1.00 3475 134 0.3453 0.3927 REMARK 3 26 2.1000 - 2.0800 1.00 3522 136 0.3487 0.3930 REMARK 3 27 2.0800 - 2.0500 1.00 3569 136 0.3665 0.3660 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.343 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.134 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4456 REMARK 3 ANGLE : 0.861 6053 REMARK 3 CHIRALITY : 0.054 728 REMARK 3 PLANARITY : 0.004 750 REMARK 3 DIHEDRAL : 17.257 2687 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6PPV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1000242869. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52874 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 98.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 21.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MM SODIUM FORMATE, 20 MM AMMONIUM REMARK 280 ACETATE, 20 MM TRISODIUM CITRATE, 20 MM SODIUM POTASSIUM REMARK 280 TARTRATE, 20 MM SODIUM OXAMATE, 100 MM SODIUM HEPES BASE, 100 MM REMARK 280 MOPS ACID, 10 % PEG 8,000, 20 % ETHYLENE GLYCOL, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 98.68933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 197.37867 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 197.37867 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 98.68933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -85.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLN A 3 REMARK 465 ALA A 4 REMARK 465 THR A 5 REMARK 465 GLN A 6 REMARK 465 ILE A 7 REMARK 465 ILE A 8 REMARK 465 PRO A 9 REMARK 465 PHE A 10 REMARK 465 THR A 11 REMARK 465 THR A 12 REMARK 465 SER A 13 REMARK 465 GLY A 14 REMARK 465 ASP A 84 REMARK 465 LYS B 94 REMARK 465 ARG B 95 REMARK 465 GLN B 96 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 GLU C 2 REMARK 465 SER C 3 REMARK 465 ALA C 4 REMARK 465 GLN C 5 REMARK 465 ALA C 6 REMARK 465 VAL C 7 REMARK 465 ASP C 58 REMARK 465 ASP C 59 REMARK 465 GLU C 60 REMARK 465 GLU C 61 REMARK 465 THR C 62 REMARK 465 ASP C 63 REMARK 465 LYS C 64 REMARK 465 ASP C 65 REMARK 465 LYS C 66 REMARK 465 ALA C 67 REMARK 465 ASN C 93 REMARK 465 GLN D 83 REMARK 465 ALA D 84 REMARK 465 GLN D 85 REMARK 465 GLN D 86 REMARK 465 ARG D 87 REMARK 465 GLU D 88 REMARK 465 ASN D 89 REMARK 465 ARG D 90 REMARK 465 GLY D 91 REMARK 465 SER D 92 REMARK 465 ARG D 93 REMARK 465 PHE D 94 REMARK 465 ARG D 95 REMARK 465 GLY D 96 REMARK 465 ARG D 97 REMARK 465 GLY D 98 REMARK 465 GLN D 99 REMARK 465 ARG D 100 REMARK 465 GLY D 101 REMARK 465 ARG D 102 REMARK 465 GLY D 103 REMARK 465 ASN D 104 REMARK 465 TYR D 105 REMARK 465 GLY D 106 REMARK 465 HIS D 107 REMARK 465 THR D 108 REMARK 465 ALA D 109 REMARK 465 PRO D 110 REMARK 465 ASN D 111 REMARK 465 ARG D 112 REMARK 465 ARG D 113 REMARK 465 GLY D 114 REMARK 465 ARG D 115 REMARK 465 GLY D 116 REMARK 465 ARG D 117 REMARK 465 GLY D 118 REMARK 465 GLY D 119 REMARK 465 HIS D 120 REMARK 465 MET D 121 REMARK 465 TRP D 122 REMARK 465 SER D 123 REMARK 465 HIS D 124 REMARK 465 PRO D 125 REMARK 465 GLN D 126 REMARK 465 PHE D 127 REMARK 465 GLU D 128 REMARK 465 LYS D 129 REMARK 465 MET E 1 REMARK 465 SER E 2 REMARK 465 MET E 3 REMARK 465 THR E 4 REMARK 465 GLU E 80 REMARK 465 GLY F -1 REMARK 465 SER F 0 REMARK 465 MET F 1 REMARK 465 ASP F 2 REMARK 465 ASP F 74 REMARK 465 ASP F 75 REMARK 465 MET G 1 REMARK 465 SER G 2 REMARK 465 SER G 3 REMARK 465 LEU G 4 REMARK 465 GLN G 5 REMARK 465 LYS G 6 REMARK 465 ARG G 7 REMARK 465 PRO G 8 REMARK 465 GLY G 9 REMARK 465 PRO G 10 REMARK 465 GLY G 11 REMARK 465 ASN G 12 REMARK 465 SER G 13 REMARK 465 SER G 14 REMARK 465 GLN G 15 REMARK 465 PRO G 16 REMARK 465 THR G 17 REMARK 465 GLU G 18 REMARK 465 ARG G 19 REMARK 465 PRO G 20 REMARK 465 ARG G 21 REMARK 465 LYS G 22 REMARK 465 GLU G 23 REMARK 465 PHE G 109 REMARK 465 VAL G 110 REMARK 465 GLN G 111 REMARK 465 ALA G 112 REMARK 465 GLU G 113 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 22 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 58 CG CD CE NZ REMARK 470 ASP B 59 CG OD1 OD2 REMARK 470 SER B 74 OG REMARK 470 ASN B 92 CG OD1 ND2 REMARK 470 ASN B 93 CG OD1 ND2 REMARK 470 PHE C 57 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG C 92 CG CD NE CZ NH1 NH2 REMARK 470 ASP D 49 CG OD1 OD2 REMARK 470 ASP D 51 CG OD1 OD2 REMARK 470 LYS D 52 CG CD CE NZ REMARK 470 PHE D 53 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG D 55 CG CD NE CZ NH1 NH2 REMARK 470 GLN D 78 CG CD OE1 NE2 REMARK 470 VAL D 79 CG1 CG2 REMARK 470 LYS D 81 CG CD CE NZ REMARK 470 GLN D 82 CG CD OE1 NE2 REMARK 470 LYS E 13 CG CD CE NZ REMARK 470 LYS F 15 CG CD CE NZ REMARK 470 LYS F 52 CG CD CE NZ REMARK 470 GLN G 55 CG CD OE1 NE2 REMARK 470 ASN G 70 CG OD1 ND2 REMARK 470 GLU G 72 CG CD OE1 OE2 REMARK 470 ASP G 73 CG OD1 OD2 REMARK 470 LYS G 75 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 59 -133.06 51.40 REMARK 500 ASP B 22 0.22 81.03 REMARK 500 ASN B 92 -82.51 -77.01 REMARK 500 ASP C 19 9.58 56.72 REMARK 500 GLU D 42 70.39 53.29 REMARK 500 ASP D 49 -6.08 -59.41 REMARK 500 ASP E 37 -165.02 -113.40 REMARK 500 ASN F 50 -111.33 48.26 REMARK 500 GLU G 72 -81.16 -74.27 REMARK 500 ASN G 107 106.61 -40.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL E 40 ASN E 41 148.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 136 DISTANCE = 6.43 ANGSTROMS DBREF 6PPV A 1 84 UNP P87173 LSM1_SCHPO 1 84 DBREF 6PPV B 1 96 UNP O94408 LSM2_SCHPO 1 96 DBREF 6PPV C 1 93 UNP Q9Y7M4 LSM3_SCHPO 1 93 DBREF 6PPV D 1 121 UNP O14352 LSM4_SCHPO 1 121 DBREF 6PPV E 1 80 UNP O42978 LSM5_SCHPO 1 80 DBREF 6PPV F 1 75 UNP Q9UUI1 LSM6_SCHPO 1 75 DBREF 6PPV G 1 113 UNP O74499 LSM7_SCHPO 1 113 DBREF 6PPV H 95 100 PDB 6PPV 6PPV 95 100 SEQADV 6PPV GLY A -1 UNP P87173 EXPRESSION TAG SEQADV 6PPV SER A 0 UNP P87173 EXPRESSION TAG SEQADV 6PPV GLY C -1 UNP Q9Y7M4 EXPRESSION TAG SEQADV 6PPV SER C 0 UNP Q9Y7M4 EXPRESSION TAG SEQADV 6PPV TRP D 122 UNP O14352 EXPRESSION TAG SEQADV 6PPV SER D 123 UNP O14352 EXPRESSION TAG SEQADV 6PPV HIS D 124 UNP O14352 EXPRESSION TAG SEQADV 6PPV PRO D 125 UNP O14352 EXPRESSION TAG SEQADV 6PPV GLN D 126 UNP O14352 EXPRESSION TAG SEQADV 6PPV PHE D 127 UNP O14352 EXPRESSION TAG SEQADV 6PPV GLU D 128 UNP O14352 EXPRESSION TAG SEQADV 6PPV LYS D 129 UNP O14352 EXPRESSION TAG SEQADV 6PPV GLY F -1 UNP Q9UUI1 EXPRESSION TAG SEQADV 6PPV SER F 0 UNP Q9UUI1 EXPRESSION TAG SEQRES 1 A 86 GLY SER MET ASN GLN ALA THR GLN ILE ILE PRO PHE THR SEQRES 2 A 86 THR SER GLY SER LEU VAL ASP TYR VAL ASP ARG LYS VAL SEQRES 3 A 86 ILE VAL VAL LEU ARG ASP GLY LYS LYS LEU ILE GLY ILE SEQRES 4 A 86 LEU ARG SER PHE ASP GLN PHE ALA ASN LEU MET LEU GLN SEQRES 5 A 86 TYR THR ILE GLU ARG ILE TYR VAL ASP ASP MET TYR GLY SEQRES 6 A 86 ASP ILE ASP ARG GLY VAL TYR ILE VAL ARG GLY GLU ASN SEQRES 7 A 86 VAL VAL LEU LEU GLY GLU LEU ASP SEQRES 1 B 96 MET LEU PHE TYR SER PHE PHE LYS THR LEU ILE ASP THR SEQRES 2 B 96 GLU VAL THR VAL GLU LEU LYS ASN ASP MET SER ILE ARG SEQRES 3 B 96 GLY ILE LEU LYS SER VAL ASP GLN PHE LEU ASN VAL LYS SEQRES 4 B 96 LEU GLU ASN ILE SER VAL VAL ASP ALA SER LYS TYR PRO SEQRES 5 B 96 HIS MET ALA ALA VAL LYS ASP LEU PHE ILE ARG GLY SER SEQRES 6 B 96 VAL VAL ARG TYR VAL HIS MET SER SER ALA TYR VAL ASP SEQRES 7 B 96 THR ILE LEU LEU ALA ASP ALA CYS ARG ARG ASP LEU ALA SEQRES 8 B 96 ASN ASN LYS ARG GLN SEQRES 1 C 95 GLY SER MET GLU SER ALA GLN ALA VAL ALA GLU PRO LEU SEQRES 2 C 95 ASP LEU VAL ARG LEU SER LEU ASP GLU ILE VAL TYR VAL SEQRES 3 C 95 LYS LEU ARG GLY ASP ARG GLU LEU ASN GLY ARG LEU HIS SEQRES 4 C 95 ALA TYR ASP GLU HIS LEU ASN MET VAL LEU GLY ASP ALA SEQRES 5 C 95 GLU GLU ILE VAL THR ILE PHE ASP ASP GLU GLU THR ASP SEQRES 6 C 95 LYS ASP LYS ALA LEU LYS THR ILE ARG LYS HIS TYR GLU SEQRES 7 C 95 MET LEU PHE VAL ARG GLY ASP SER VAL ILE LEU ILE ALA SEQRES 8 C 95 PRO PRO ARG ASN SEQRES 1 D 129 MET LEU PRO LEU THR LEU LEU ASN ALA THR GLN GLY ARG SEQRES 2 D 129 PRO ILE LEU VAL GLU LEU LYS ASN GLY GLU THR PHE ASN SEQRES 3 D 129 GLY HIS LEU GLU ASN CYS ASP ASN TYR MET ASN LEU THR SEQRES 4 D 129 LEU ARG GLU VAL ILE ARG THR MET PRO ASP GLY ASP LYS SEQRES 5 D 129 PHE PHE ARG LEU PRO GLU CYS TYR ILE ARG GLY ASN ASN SEQRES 6 D 129 ILE LYS TYR LEU ARG ILE GLN ASP GLU VAL LEU SER GLN SEQRES 7 D 129 VAL ALA LYS GLN GLN ALA GLN GLN ARG GLU ASN ARG GLY SEQRES 8 D 129 SER ARG PHE ARG GLY ARG GLY GLN ARG GLY ARG GLY ASN SEQRES 9 D 129 TYR GLY HIS THR ALA PRO ASN ARG ARG GLY ARG GLY ARG SEQRES 10 D 129 GLY GLY HIS MET TRP SER HIS PRO GLN PHE GLU LYS SEQRES 1 E 80 MET SER MET THR ILE LEU PRO LEU GLU LEU ILE ASP LYS SEQRES 2 E 80 CYS ILE GLY SER ASN LEU TRP VAL ILE MET LYS SER GLU SEQRES 3 E 80 ARG GLU PHE ALA GLY THR LEU VAL GLY PHE ASP ASP TYR SEQRES 4 E 80 VAL ASN ILE VAL LEU LYS ASP VAL THR GLU TYR ASP THR SEQRES 5 E 80 VAL THR GLY VAL THR GLU LYS HIS SER GLU MET LEU LEU SEQRES 6 E 80 ASN GLY ASN GLY MET CYS MET LEU ILE PRO GLY GLY LYS SEQRES 7 E 80 PRO GLU SEQRES 1 F 77 GLY SER MET ASP SER SER PRO ASN GLU PHE LEU ASN LYS SEQRES 2 F 77 VAL ILE GLY LYS LYS VAL LEU ILE ARG LEU SER SER GLY SEQRES 3 F 77 VAL ASP TYR LYS GLY ILE LEU SER CYS LEU ASP GLY TYR SEQRES 4 F 77 MET ASN LEU ALA LEU GLU ARG THR GLU GLU TYR VAL ASN SEQRES 5 F 77 GLY LYS LYS THR ASN VAL TYR GLY ASP ALA PHE ILE ARG SEQRES 6 F 77 GLY ASN ASN VAL LEU TYR VAL SER ALA LEU ASP ASP SEQRES 1 G 113 MET SER SER LEU GLN LYS ARG PRO GLY PRO GLY ASN SER SEQRES 2 G 113 SER GLN PRO THR GLU ARG PRO ARG LYS GLU SER ILE LEU SEQRES 3 G 113 ASP LEU SER ARG TYR GLN ASP GLN ARG ILE GLN ALA THR SEQRES 4 G 113 PHE THR GLY GLY ARG GLN ILE THR GLY ILE LEU LYS GLY SEQRES 5 G 113 PHE ASP GLN LEU MET ASN LEU VAL LEU ASP ASP VAL GLU SEQRES 6 G 113 GLU GLN LEU ARG ASN PRO GLU ASP GLY LYS LEU THR GLY SEQRES 7 G 113 ALA ILE ARG LYS LEU GLY LEU VAL VAL VAL ARG GLY THR SEQRES 8 G 113 THR LEU VAL LEU ILE ALA PRO MET ASP GLY SER GLU GLU SEQRES 9 G 113 ILE PRO ASN PRO PHE VAL GLN ALA GLU SEQRES 1 H 6 A U U U U G FORMUL 9 HOH *190(H2 O) HELIX 1 AA1 SER A 15 VAL A 20 5 6 HELIX 2 AA2 LEU B 2 LEU B 10 1 9 HELIX 3 AA3 ASP B 47 ALA B 55 5 9 HELIX 4 AA4 ALA B 75 ASN B 93 1 19 HELIX 5 AA5 PRO C 10 LEU C 16 1 7 HELIX 6 AA6 LEU D 2 THR D 10 1 9 HELIX 7 AA7 GLN D 72 LYS D 81 1 10 HELIX 8 AA8 LEU E 6 CYS E 14 1 9 HELIX 9 AA9 SER F 4 ILE F 13 1 10 HELIX 10 AB1 ASP G 27 GLN G 32 5 6 SHEET 1 AA137 GLU G 103 ILE G 105 0 SHEET 2 AA137 PHE D 53 ILE D 61 -1 N ARG D 55 O GLU G 103 SHEET 3 AA137 LEU G 93 PRO G 98 -1 O ILE G 96 N TYR D 60 SHEET 4 AA137 ARG G 35 PHE G 40 -1 N THR G 39 O VAL G 94 SHEET 5 AA137 GLN G 45 PHE G 53 -1 O GLY G 48 N ILE G 36 SHEET 6 AA137 LEU G 59 ARG G 69 -1 O VAL G 60 N LYS G 51 SHEET 7 AA137 LEU G 76 VAL G 88 -1 O VAL G 86 N LEU G 61 SHEET 8 AA137 MET E 70 PRO E 75 -1 N LEU E 73 O VAL G 87 SHEET 9 AA137 ASN E 18 MET E 23 -1 N TRP E 20 O ILE E 74 SHEET 10 AA137 ARG E 27 PHE E 36 -1 O PHE E 29 N VAL E 21 SHEET 11 AA137 ILE E 42 ASP E 51 -1 O TYR E 50 N GLU E 28 SHEET 12 AA137 THR E 57 LEU E 65 -1 O LEU E 65 N ILE E 42 SHEET 13 AA137 VAL F 67 ALA F 72 -1 O ALA F 72 N GLU E 62 SHEET 14 AA137 LYS F 16 LEU F 21 -1 N LEU F 18 O SER F 71 SHEET 15 AA137 ASP F 26 LEU F 34 -1 O TYR F 27 N ILE F 19 SHEET 16 AA137 LEU F 40 VAL F 49 -1 O GLU F 43 N ILE F 30 SHEET 17 AA137 LYS F 52 ILE F 62 -1 O TYR F 57 N THR F 45 SHEET 18 AA137 VAL C 85 ALA C 89 -1 N ILE C 88 O PHE F 61 SHEET 19 AA137 ILE C 21 LEU C 26 -1 N LYS C 25 O ILE C 86 SHEET 20 AA137 ARG C 30 TYR C 39 -1 O GLY C 34 N VAL C 22 SHEET 21 AA137 MET C 45 ILE C 56 -1 O VAL C 46 N HIS C 37 SHEET 22 AA137 LYS C 69 VAL C 80 -1 O VAL C 80 N MET C 45 SHEET 23 AA137 VAL B 67 MET B 72 -1 N VAL B 70 O PHE C 79 SHEET 24 AA137 GLU B 14 LEU B 19 -1 N GLU B 18 O TYR B 69 SHEET 25 AA137 SER B 24 VAL B 32 -1 O ILE B 25 N VAL B 17 SHEET 26 AA137 VAL B 38 VAL B 45 -1 O SER B 44 N ARG B 26 SHEET 27 AA137 LEU B 60 ILE B 62 -1 O ILE B 62 N VAL B 38 SHEET 28 AA137 VAL A 77 GLU A 82 -1 N LEU A 80 O PHE B 61 SHEET 29 AA137 LYS A 23 LEU A 28 -1 N ILE A 25 O GLY A 81 SHEET 30 AA137 LYS A 33 PHE A 41 -1 O GLY A 36 N VAL A 24 SHEET 31 AA137 LEU A 47 VAL A 58 -1 O GLN A 50 N ILE A 37 SHEET 32 AA137 MET A 61 VAL A 72 -1 O GLY A 63 N ILE A 56 SHEET 33 AA137 ILE D 66 ILE D 71 -1 O LEU D 69 N ILE A 71 SHEET 34 AA137 PRO D 14 LEU D 19 -1 N GLU D 18 O LYS D 67 SHEET 35 AA137 THR D 24 CYS D 32 -1 O PHE D 25 N VAL D 17 SHEET 36 AA137 LEU D 38 THR D 46 -1 O THR D 39 N GLU D 30 SHEET 37 AA137 PHE D 53 ILE D 61 -1 O LEU D 56 N VAL D 43 CRYST1 69.023 69.023 296.068 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014488 0.008365 0.000000 0.00000 SCALE2 0.000000 0.016729 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003378 0.00000