HEADER TRANSFERASE 10-JUL-19 6PR0 TITLE P133H-S128A S. TYPHIMURIUM SIROHEME SYNTHASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIROHEME SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.1.1.107,1.3.1.76,4.99.1.4; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_TAXID: 90371; SOURCE 4 GENE: CYSG, COBA, AAP89_23165, ABO94_22995, AF480_23265, SOURCE 5 AF488_22710, AF489_21700, AIC76_23675, AXR84_23260, AXU58_22185, SOURCE 6 C2253_19735, CD48_22680, CE87_23070, CET98_25025, CVR97_13625, SOURCE 7 D7F20_23535, D7H43_21790, DJ388_17225, E2F01_22980, FCJ89_03505, SOURCE 8 FGA22_01875, FGA24_01980, FGA25_01865, FGA26_01870, GW08_22845, SOURCE 9 JO10_22525, LZ63_24065, NCTC13348_03825, NG18_22490, NU83_22495, SOURCE 10 QA89_22165, QB40_24005, QD15_23475, RJ78_23420, SE14_03689, SOURCE 11 Y934_21155, YG50_22125, YI33_23225, YR17_23015, ZC54_23835; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PRECORRIN-2, TETRAPYRROLE BIOSYNTHESIS, CYSG, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.PENNINGTON,M.E.STROUPE REVDAT 2 11-OCT-23 6PR0 1 REMARK REVDAT 1 26-FEB-20 6PR0 0 JRNL AUTH J.M.PENNINGTON,M.KEMP,L.MCGARRY,Y.CHEN,M.E.STROUPE JRNL TITL SIROHEME SYNTHASE ORIENTS SUBSTRATES FOR DEHYDROGENASE AND JRNL TITL 2 CHELATASE ACTIVITIES IN A COMMON ACTIVE SITE. JRNL REF NAT COMMUN V. 11 864 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32054833 JRNL DOI 10.1038/S41467-020-14722-1 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 69368 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.570 REMARK 3 FREE R VALUE TEST SET COUNT : 1785 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.2700 - 4.4700 0.99 5512 145 0.1563 0.1892 REMARK 3 2 4.4700 - 3.5500 0.93 4946 131 0.1415 0.2086 REMARK 3 3 3.5500 - 3.1000 1.00 5304 140 0.1807 0.2277 REMARK 3 4 3.1000 - 2.8100 1.00 5246 138 0.1974 0.2463 REMARK 3 5 2.8100 - 2.6100 1.00 5238 139 0.1925 0.2439 REMARK 3 6 2.6100 - 2.4600 1.00 5222 138 0.1880 0.2215 REMARK 3 7 2.4600 - 2.3400 1.00 5192 136 0.1924 0.2715 REMARK 3 8 2.3400 - 2.2300 0.99 5176 137 0.2226 0.2694 REMARK 3 9 2.2300 - 2.1500 1.00 5189 137 0.2078 0.2559 REMARK 3 10 2.1500 - 2.0700 1.00 5166 137 0.2058 0.2825 REMARK 3 11 2.0700 - 2.0100 1.00 5146 136 0.2185 0.2223 REMARK 3 12 2.0100 - 1.9500 0.99 5146 136 0.2740 0.3641 REMARK 3 13 1.9500 - 1.9000 0.98 5100 135 0.3117 0.3328 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.239 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.131 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.13 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 7169 REMARK 3 ANGLE : 0.891 9724 REMARK 3 CHIRALITY : 0.058 1117 REMARK 3 PLANARITY : 0.005 1277 REMARK 3 DIHEDRAL : 4.969 5950 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.5574 -21.1309 47.6631 REMARK 3 T TENSOR REMARK 3 T11: 0.1701 T22: 0.2011 REMARK 3 T33: 0.2998 T12: 0.0001 REMARK 3 T13: -0.0379 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 4.5798 L22: 2.9365 REMARK 3 L33: 1.8943 L12: 1.4039 REMARK 3 L13: 0.0661 L23: 0.3375 REMARK 3 S TENSOR REMARK 3 S11: 0.1159 S12: -0.2923 S13: -0.4774 REMARK 3 S21: 0.1215 S22: -0.0735 S23: -0.0362 REMARK 3 S31: 0.1855 S32: 0.0254 S33: -0.0213 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 148 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.6299 -24.1463 38.4068 REMARK 3 T TENSOR REMARK 3 T11: 0.4231 T22: 0.4170 REMARK 3 T33: 0.3867 T12: -0.0835 REMARK 3 T13: 0.0029 T23: -0.0208 REMARK 3 L TENSOR REMARK 3 L11: 3.3286 L22: 3.0757 REMARK 3 L33: 7.1923 L12: 0.0884 REMARK 3 L13: 2.2287 L23: 1.4885 REMARK 3 S TENSOR REMARK 3 S11: 0.4170 S12: -0.2216 S13: -0.8142 REMARK 3 S21: -0.2463 S22: -0.1591 S23: -0.1917 REMARK 3 S31: 1.2942 S32: -0.6118 S33: -0.3023 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 149 THROUGH 209 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.7736 -14.2757 54.9320 REMARK 3 T TENSOR REMARK 3 T11: 0.2056 T22: 0.4101 REMARK 3 T33: 0.2133 T12: -0.0211 REMARK 3 T13: 0.0012 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 4.5741 L22: 2.7492 REMARK 3 L33: 3.3044 L12: 0.1686 REMARK 3 L13: 0.3315 L23: 0.6422 REMARK 3 S TENSOR REMARK 3 S11: -0.0115 S12: -0.4754 S13: -0.1865 REMARK 3 S21: -0.0332 S22: 0.0213 S23: 0.1186 REMARK 3 S31: -0.1236 S32: -0.3874 S33: -0.0064 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 210 THROUGH 247 ) REMARK 3 ORIGIN FOR THE GROUP (A): 67.3594 -3.3435 33.9729 REMARK 3 T TENSOR REMARK 3 T11: 0.3743 T22: 0.2945 REMARK 3 T33: 0.2509 T12: 0.0030 REMARK 3 T13: 0.0512 T23: -0.0490 REMARK 3 L TENSOR REMARK 3 L11: 0.4022 L22: 1.1413 REMARK 3 L33: 1.0348 L12: -0.1826 REMARK 3 L13: -0.3428 L23: -0.5430 REMARK 3 S TENSOR REMARK 3 S11: 0.0158 S12: -0.2636 S13: 0.1056 REMARK 3 S21: 0.3550 S22: -0.0099 S23: -0.0644 REMARK 3 S31: -0.2557 S32: 0.0209 S33: -0.0317 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 248 THROUGH 340 ) REMARK 3 ORIGIN FOR THE GROUP (A): 67.4426 3.7879 27.7598 REMARK 3 T TENSOR REMARK 3 T11: 0.4038 T22: 0.2122 REMARK 3 T33: 0.3256 T12: 0.0071 REMARK 3 T13: 0.0577 T23: -0.0505 REMARK 3 L TENSOR REMARK 3 L11: 2.2909 L22: 1.9111 REMARK 3 L33: 2.5393 L12: 0.3147 REMARK 3 L13: -0.4860 L23: -0.4082 REMARK 3 S TENSOR REMARK 3 S11: 0.1353 S12: -0.2409 S13: 0.5852 REMARK 3 S21: 0.2746 S22: -0.0777 S23: 0.2263 REMARK 3 S31: -0.6721 S32: 0.0179 S33: -0.0386 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 341 THROUGH 457 ) REMARK 3 ORIGIN FOR THE GROUP (A): 67.5784 -1.4040 1.1903 REMARK 3 T TENSOR REMARK 3 T11: 0.3087 T22: 0.3096 REMARK 3 T33: 0.2050 T12: 0.0137 REMARK 3 T13: -0.0289 T23: 0.0276 REMARK 3 L TENSOR REMARK 3 L11: 2.8355 L22: 2.9894 REMARK 3 L33: 4.5718 L12: 1.1018 REMARK 3 L13: -1.1895 L23: -2.1632 REMARK 3 S TENSOR REMARK 3 S11: -0.0699 S12: 0.4128 S13: 0.1400 REMARK 3 S21: -0.3466 S22: 0.1736 S23: 0.1032 REMARK 3 S31: 0.1152 S32: -0.2355 S33: -0.0898 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 209 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.9530 -9.3030 35.4351 REMARK 3 T TENSOR REMARK 3 T11: 0.2234 T22: 0.2508 REMARK 3 T33: 0.2987 T12: -0.0387 REMARK 3 T13: -0.0619 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 1.4048 L22: 2.2119 REMARK 3 L33: 1.8952 L12: -0.4480 REMARK 3 L13: -0.5825 L23: 0.7958 REMARK 3 S TENSOR REMARK 3 S11: 0.0314 S12: 0.0840 S13: 0.0416 REMARK 3 S21: -0.2568 S22: -0.0612 S23: 0.1957 REMARK 3 S31: -0.0835 S32: 0.0533 S33: 0.0446 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 210 THROUGH 457 ) REMARK 3 ORIGIN FOR THE GROUP (A): 78.5765 -14.2906 15.5515 REMARK 3 T TENSOR REMARK 3 T11: 0.2601 T22: 0.2597 REMARK 3 T33: 0.2431 T12: 0.1087 REMARK 3 T13: 0.0388 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 1.9186 L22: 2.6408 REMARK 3 L33: 2.7366 L12: 0.6528 REMARK 3 L13: -0.3991 L23: -1.2324 REMARK 3 S TENSOR REMARK 3 S11: -0.0587 S12: 0.0690 S13: -0.2605 REMARK 3 S21: -0.1919 S22: -0.1445 S23: -0.3441 REMARK 3 S31: 0.4093 S32: 0.4008 S33: 0.1095 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6PR0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1000242919. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-AUG-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69444 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 47.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : 0.18810 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1PJS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4-14% PEG 4000, 100 MM 2-(N REMARK 280 -MORPHOLINO)ETHANESULFONIC ACID (MES) PH 5.0, 500MM SODIUM REMARK 280 CHLORIDE, 7 MM 2-MERCAPTOETHANOL (BME), VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.91400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.27200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.94100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.27200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.91400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.94100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 271 REMARK 465 ALA A 272 REMARK 465 GLY A 273 REMARK 465 TYR A 274 REMARK 465 HIS A 275 REMARK 465 CYS A 276 REMARK 465 LYS B 270 REMARK 465 ARG B 271 REMARK 465 ALA B 272 REMARK 465 GLY B 273 REMARK 465 TYR B 274 REMARK 465 HIS B 275 REMARK 465 CYS B 276 REMARK 465 HIS B 359 REMARK 465 LEU B 360 REMARK 465 LYS B 361 REMARK 465 THR B 362 REMARK 465 GLY B 363 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 243 O HOH A 601 2.01 REMARK 500 O HOH A 737 O HOH B 729 2.04 REMARK 500 OE1 GLN A 190 O HOH A 602 2.10 REMARK 500 O ILE A 46 O HOH A 603 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 638 O HOH B 768 3755 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 109 -158.56 56.97 REMARK 500 ARG A 347 -134.36 48.53 REMARK 500 THR A 362 -165.87 55.85 REMARK 500 MET A 382 53.19 38.94 REMARK 500 THR A 412 -7.68 74.04 REMARK 500 SER A 455 155.83 175.89 REMARK 500 ASN A 456 40.53 -109.75 REMARK 500 ALA B 105 78.80 -151.99 REMARK 500 SER B 132 72.83 -156.62 REMARK 500 GLN B 160 26.06 -66.28 REMARK 500 GLN B 160 11.06 -57.50 REMARK 500 LEU B 161 -2.52 -158.30 REMARK 500 LEU B 161 -2.52 -154.42 REMARK 500 ARG B 215 46.52 -145.44 REMARK 500 ARG B 347 -124.04 46.88 REMARK 500 THR B 412 -6.08 78.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PJS RELATED DB: PDB REMARK 900 PARENT STRUCTURE DBREF1 6PR0 A 1 457 UNP A0A0F7JCI1_SALTM DBREF2 6PR0 A A0A0F7JCI1 1 457 DBREF1 6PR0 B 1 457 UNP A0A0F7JCI1_SALTM DBREF2 6PR0 B A0A0F7JCI1 1 457 SEQADV 6PR0 ALA A 128 UNP A0A0F7JCI SER 128 CONFLICT SEQADV 6PR0 HIS A 133 UNP A0A0F7JCI PRO 133 ENGINEERED MUTATION SEQADV 6PR0 ALA B 128 UNP A0A0F7JCI SER 128 CONFLICT SEQADV 6PR0 HIS B 133 UNP A0A0F7JCI PRO 133 ENGINEERED MUTATION SEQRES 1 A 457 MET ASP HIS LEU PRO ILE PHE CYS GLN LEU ARG ASP ARG SEQRES 2 A 457 ASP CYS LEU ILE VAL GLY GLY GLY ASP VAL ALA GLU ARG SEQRES 3 A 457 LYS ALA ARG LEU LEU LEU GLU ALA GLY ALA ARG LEU THR SEQRES 4 A 457 VAL ASN ALA LEU THR PHE ILE PRO GLN PHE THR VAL TRP SEQRES 5 A 457 ALA ASN GLU GLY MET LEU THR LEU VAL GLU GLY PRO PHE SEQRES 6 A 457 ASP GLU THR LEU LEU ASP SER CYS TRP LEU ALA ILE ALA SEQRES 7 A 457 ALA THR ASP ASP ASP THR VAL ASN GLN ARG VAL SER ASP SEQRES 8 A 457 ALA ALA GLU SER ARG ARG ILE PHE CYS ASN VAL VAL ASP SEQRES 9 A 457 ALA PRO LYS ALA ALA SER PHE ILE MET PRO SER ILE ILE SEQRES 10 A 457 ASP ARG SER PRO LEU MET VAL ALA VAL SER ALA GLY GLY SEQRES 11 A 457 THR SER HIS VAL LEU ALA ARG LEU LEU ARG GLU LYS LEU SEQRES 12 A 457 GLU SER LEU LEU PRO GLN HIS LEU GLY GLN VAL ALA ARG SEQRES 13 A 457 TYR ALA GLY GLN LEU ARG ALA ARG VAL LYS LYS GLN PHE SEQRES 14 A 457 ALA THR MET GLY GLU ARG ARG ARG PHE TRP GLU LYS PHE SEQRES 15 A 457 PHE VAL ASN ASP ARG LEU ALA GLN SER LEU ALA ASN ALA SEQRES 16 A 457 ASP GLU LYS ALA VAL ASN ALA THR THR GLU ARG LEU PHE SEQRES 17 A 457 SER GLU PRO LEU ASP HIS ARG GLY GLU VAL VAL LEU VAL SEQRES 18 A 457 GLY ALA GLY PRO GLY ASP ALA GLY LEU LEU THR LEU LYS SEQRES 19 A 457 GLY LEU GLN GLN ILE GLN GLN ALA ASP ILE VAL VAL TYR SEQRES 20 A 457 ASP ARG LEU VAL SER ASP ASP ILE MET ASN LEU VAL ARG SEQRES 21 A 457 ARG ASP ALA ASP ARG VAL PHE VAL GLY LYS ARG ALA GLY SEQRES 22 A 457 TYR HIS CYS VAL PRO GLN GLU GLU ILE ASN GLN ILE LEU SEQRES 23 A 457 LEU ARG GLU ALA GLN LYS GLY LYS ARG VAL VAL ARG LEU SEQRES 24 A 457 LYS GLY GLY ASP PRO PHE ILE PHE GLY ARG GLY GLY GLU SEQRES 25 A 457 GLU LEU GLU THR LEU CYS HIS ALA GLY ILE PRO PHE SER SEQRES 26 A 457 VAL VAL PRO GLY ILE THR ALA ALA SER GLY CYS SER ALA SEQRES 27 A 457 TYR SER GLY ILE PRO LEU THR HIS ARG ASP TYR ALA GLN SEQRES 28 A 457 SER VAL ARG LEU VAL THR GLY HIS LEU LYS THR GLY GLY SEQRES 29 A 457 GLU LEU ASP TRP GLU ASN LEU ALA ALA GLU LYS GLN THR SEQRES 30 A 457 LEU VAL PHE TYR MET GLY LEU ASN GLN ALA ALA THR ILE SEQRES 31 A 457 GLN GLU LYS LEU ILE ALA PHE GLY MET GLN ALA ASP MET SEQRES 32 A 457 PRO VAL ALA LEU VAL GLU ASN GLY THR SER VAL LYS GLN SEQRES 33 A 457 ARG VAL VAL HIS GLY VAL LEU THR GLN LEU GLY GLU LEU SEQRES 34 A 457 ALA GLN GLN VAL GLU SER PRO ALA LEU ILE ILE VAL GLY SEQRES 35 A 457 ARG VAL VAL ALA LEU ARG ASP LYS LEU ASN TRP PHE SER SEQRES 36 A 457 ASN HIS SEQRES 1 B 457 MET ASP HIS LEU PRO ILE PHE CYS GLN LEU ARG ASP ARG SEQRES 2 B 457 ASP CYS LEU ILE VAL GLY GLY GLY ASP VAL ALA GLU ARG SEQRES 3 B 457 LYS ALA ARG LEU LEU LEU GLU ALA GLY ALA ARG LEU THR SEQRES 4 B 457 VAL ASN ALA LEU THR PHE ILE PRO GLN PHE THR VAL TRP SEQRES 5 B 457 ALA ASN GLU GLY MET LEU THR LEU VAL GLU GLY PRO PHE SEQRES 6 B 457 ASP GLU THR LEU LEU ASP SER CYS TRP LEU ALA ILE ALA SEQRES 7 B 457 ALA THR ASP ASP ASP THR VAL ASN GLN ARG VAL SER ASP SEQRES 8 B 457 ALA ALA GLU SER ARG ARG ILE PHE CYS ASN VAL VAL ASP SEQRES 9 B 457 ALA PRO LYS ALA ALA SER PHE ILE MET PRO SER ILE ILE SEQRES 10 B 457 ASP ARG SER PRO LEU MET VAL ALA VAL SER ALA GLY GLY SEQRES 11 B 457 THR SER HIS VAL LEU ALA ARG LEU LEU ARG GLU LYS LEU SEQRES 12 B 457 GLU SER LEU LEU PRO GLN HIS LEU GLY GLN VAL ALA ARG SEQRES 13 B 457 TYR ALA GLY GLN LEU ARG ALA ARG VAL LYS LYS GLN PHE SEQRES 14 B 457 ALA THR MET GLY GLU ARG ARG ARG PHE TRP GLU LYS PHE SEQRES 15 B 457 PHE VAL ASN ASP ARG LEU ALA GLN SER LEU ALA ASN ALA SEQRES 16 B 457 ASP GLU LYS ALA VAL ASN ALA THR THR GLU ARG LEU PHE SEQRES 17 B 457 SER GLU PRO LEU ASP HIS ARG GLY GLU VAL VAL LEU VAL SEQRES 18 B 457 GLY ALA GLY PRO GLY ASP ALA GLY LEU LEU THR LEU LYS SEQRES 19 B 457 GLY LEU GLN GLN ILE GLN GLN ALA ASP ILE VAL VAL TYR SEQRES 20 B 457 ASP ARG LEU VAL SER ASP ASP ILE MET ASN LEU VAL ARG SEQRES 21 B 457 ARG ASP ALA ASP ARG VAL PHE VAL GLY LYS ARG ALA GLY SEQRES 22 B 457 TYR HIS CYS VAL PRO GLN GLU GLU ILE ASN GLN ILE LEU SEQRES 23 B 457 LEU ARG GLU ALA GLN LYS GLY LYS ARG VAL VAL ARG LEU SEQRES 24 B 457 LYS GLY GLY ASP PRO PHE ILE PHE GLY ARG GLY GLY GLU SEQRES 25 B 457 GLU LEU GLU THR LEU CYS HIS ALA GLY ILE PRO PHE SER SEQRES 26 B 457 VAL VAL PRO GLY ILE THR ALA ALA SER GLY CYS SER ALA SEQRES 27 B 457 TYR SER GLY ILE PRO LEU THR HIS ARG ASP TYR ALA GLN SEQRES 28 B 457 SER VAL ARG LEU VAL THR GLY HIS LEU LYS THR GLY GLY SEQRES 29 B 457 GLU LEU ASP TRP GLU ASN LEU ALA ALA GLU LYS GLN THR SEQRES 30 B 457 LEU VAL PHE TYR MET GLY LEU ASN GLN ALA ALA THR ILE SEQRES 31 B 457 GLN GLU LYS LEU ILE ALA PHE GLY MET GLN ALA ASP MET SEQRES 32 B 457 PRO VAL ALA LEU VAL GLU ASN GLY THR SER VAL LYS GLN SEQRES 33 B 457 ARG VAL VAL HIS GLY VAL LEU THR GLN LEU GLY GLU LEU SEQRES 34 B 457 ALA GLN GLN VAL GLU SER PRO ALA LEU ILE ILE VAL GLY SEQRES 35 B 457 ARG VAL VAL ALA LEU ARG ASP LYS LEU ASN TRP PHE SER SEQRES 36 B 457 ASN HIS HET SAH A 501 26 HET SAH B 501 26 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 3 SAH 2(C14 H20 N6 O5 S) FORMUL 5 HOH *393(H2 O) HELIX 1 AA1 GLY A 21 ALA A 34 1 14 HELIX 2 AA2 PRO A 47 GLU A 55 1 9 HELIX 3 AA3 ASP A 66 ASP A 71 5 6 HELIX 4 AA4 ASP A 82 SER A 95 1 14 HELIX 5 AA5 SER A 132 LEU A 147 1 16 HELIX 6 AA6 HIS A 150 PHE A 169 1 20 HELIX 7 AA7 THR A 171 PHE A 183 1 13 HELIX 8 AA8 ASN A 185 ASN A 194 1 10 HELIX 9 AA9 ASP A 196 GLU A 210 1 15 HELIX 10 AB1 ASP A 227 LEU A 231 5 5 HELIX 11 AB2 THR A 232 ALA A 242 1 11 HELIX 12 AB3 SER A 252 ASN A 257 1 6 HELIX 13 AB4 PRO A 278 LYS A 292 1 15 HELIX 14 AB5 ARG A 309 GLU A 315 1 7 HELIX 15 AB6 THR A 331 GLY A 341 1 11 HELIX 16 AB7 ASP A 367 ALA A 372 1 6 HELIX 17 AB8 GLY A 383 ASN A 385 5 3 HELIX 18 AB9 GLN A 386 PHE A 397 1 12 HELIX 19 AC1 GLN A 425 GLN A 431 1 7 HELIX 20 AC2 ARG A 443 ALA A 446 5 4 HELIX 21 AC3 LEU A 447 ASN A 452 1 6 HELIX 22 AC4 GLY B 21 ALA B 34 1 14 HELIX 23 AC5 ILE B 46 GLU B 55 1 10 HELIX 24 AC6 ASP B 66 ASP B 71 5 6 HELIX 25 AC7 ASP B 82 ARG B 96 1 15 HELIX 26 AC8 SER B 132 LEU B 147 1 16 HELIX 27 AC9 HIS B 150 GLN B 160 1 11 HELIX 28 AD1 LEU B 161 PHE B 169 1 9 HELIX 29 AD2 THR B 171 ASN B 185 1 15 HELIX 30 AD3 ASN B 185 ALA B 195 1 11 HELIX 31 AD4 ASP B 196 GLU B 210 1 15 HELIX 32 AD5 ASP B 227 LEU B 231 5 5 HELIX 33 AD6 THR B 232 ALA B 242 1 11 HELIX 34 AD7 SER B 252 ASN B 257 1 6 HELIX 35 AD8 PRO B 278 LYS B 292 1 15 HELIX 36 AD9 ARG B 309 GLY B 321 1 13 HELIX 37 AE1 THR B 331 GLY B 341 1 11 HELIX 38 AE2 ASP B 367 ALA B 373 1 7 HELIX 39 AE3 GLN B 386 PHE B 397 1 12 HELIX 40 AE4 GLN B 425 GLN B 431 1 7 HELIX 41 AE5 ARG B 443 ALA B 446 5 4 HELIX 42 AE6 LEU B 447 ASN B 452 1 6 SHEET 1 AA1 4 PHE A 111 ILE A 112 0 SHEET 2 AA1 4 LEU B 4 CYS B 8 -1 O PHE B 7 N ILE A 112 SHEET 3 AA1 4 LEU A 4 CYS A 8 -1 N CYS A 8 O LEU B 4 SHEET 4 AA1 4 PHE B 111 ILE B 112 -1 O ILE B 112 N PHE A 7 SHEET 1 AA2 5 THR A 59 GLU A 62 0 SHEET 2 AA2 5 ARG A 37 ALA A 42 1 N VAL A 40 O VAL A 61 SHEET 3 AA2 5 ASP A 14 VAL A 18 1 N ILE A 17 O ASN A 41 SHEET 4 AA2 5 LEU A 75 ALA A 78 1 O ILE A 77 N VAL A 18 SHEET 5 AA2 5 PHE A 99 VAL A 102 1 O ASN A 101 N ALA A 78 SHEET 1 AA3 4 SER A 115 ARG A 119 0 SHEET 2 AA3 4 LEU A 122 SER A 127 -1 O VAL A 126 N SER A 115 SHEET 3 AA3 4 LEU B 122 SER B 127 -1 O MET B 123 N SER A 127 SHEET 4 AA3 4 SER B 115 ARG B 119 -1 N ILE B 117 O VAL B 124 SHEET 1 AA4 5 ASP A 264 PHE A 267 0 SHEET 2 AA4 5 ILE A 244 TYR A 247 1 N VAL A 245 O VAL A 266 SHEET 3 AA4 5 ARG A 295 LYS A 300 1 O VAL A 297 N VAL A 246 SHEET 4 AA4 5 GLU A 217 GLY A 222 1 N GLU A 217 O VAL A 296 SHEET 5 AA4 5 PHE A 324 VAL A 327 1 O VAL A 327 N LEU A 220 SHEET 1 AA510 ARG A 417 VAL A 422 0 SHEET 2 AA510 PRO A 404 GLU A 409 -1 N GLU A 409 O ARG A 417 SHEET 3 AA510 ALA A 437 VAL A 441 -1 O ILE A 440 N ALA A 406 SHEET 4 AA510 GLN A 376 TYR A 381 -1 N LEU A 378 O VAL A 441 SHEET 5 AA510 SER A 352 THR A 357 1 N VAL A 356 O TYR A 381 SHEET 6 AA510 SER B 352 THR B 357 -1 O LEU B 355 N VAL A 353 SHEET 7 AA510 GLN B 376 TYR B 381 1 O TYR B 381 N VAL B 356 SHEET 8 AA510 ALA B 437 VAL B 441 -1 O VAL B 441 N LEU B 378 SHEET 9 AA510 PRO B 404 GLU B 409 -1 N ALA B 406 O ILE B 440 SHEET 10 AA510 ARG B 417 VAL B 422 -1 O VAL B 419 N LEU B 407 SHEET 1 AA6 5 THR B 59 GLU B 62 0 SHEET 2 AA6 5 ARG B 37 ALA B 42 1 N VAL B 40 O VAL B 61 SHEET 3 AA6 5 ASP B 14 VAL B 18 1 N ILE B 17 O ASN B 41 SHEET 4 AA6 5 LEU B 75 ALA B 78 1 O ILE B 77 N VAL B 18 SHEET 5 AA6 5 PHE B 99 VAL B 102 1 O ASN B 101 N ALA B 78 SHEET 1 AA7 5 ASP B 264 PHE B 267 0 SHEET 2 AA7 5 ILE B 244 TYR B 247 1 N VAL B 245 O ASP B 264 SHEET 3 AA7 5 ARG B 295 LYS B 300 1 O VAL B 297 N VAL B 246 SHEET 4 AA7 5 GLU B 217 GLY B 222 1 N GLU B 217 O VAL B 296 SHEET 5 AA7 5 PHE B 324 VAL B 327 1 O VAL B 327 N LEU B 220 CISPEP 1 SER A 120 PRO A 121 0 1.97 CISPEP 2 SER A 435 PRO A 436 0 -1.93 CISPEP 3 SER B 120 PRO B 121 0 7.68 CISPEP 4 SER B 435 PRO B 436 0 -0.99 SITE 1 AC1 21 PRO A 225 GLY A 301 GLY A 302 ASP A 303 SITE 2 AC1 21 ILE A 306 PHE A 307 THR A 331 ALA A 332 SITE 3 AC1 21 CYS A 336 TYR A 381 MET A 382 VAL A 408 SITE 4 AC1 21 ASN A 410 GLY A 411 PRO A 436 ALA A 437 SITE 5 AC1 21 LEU A 438 HOH A 660 HOH A 678 HOH A 715 SITE 6 AC1 21 HOH A 725 SITE 1 AC2 21 PRO B 225 GLY B 301 GLY B 302 ASP B 303 SITE 2 AC2 21 ILE B 306 PHE B 307 THR B 331 ALA B 332 SITE 3 AC2 21 CYS B 336 TYR B 381 MET B 382 VAL B 408 SITE 4 AC2 21 ASN B 410 GLY B 411 PRO B 436 ALA B 437 SITE 5 AC2 21 HOH B 639 HOH B 700 HOH B 717 HOH B 737 SITE 6 AC2 21 HOH B 738 CRYST1 59.828 99.882 146.544 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016715 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010012 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006824 0.00000