HEADER SIGNALING PROTEIN 11-JUL-19 6PRU TITLE PHOTOCONVERTIBLE CRYSTALS OF PIXJ FROM THERMOSYNECHOCOCCUS ELONGATUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHYL-ACCEPTING CHEMOTAXIS PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: GAF DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS ELONGATUS (STRAIN BP-1); SOURCE 3 ORGANISM_TAXID: 197221; SOURCE 4 STRAIN: BP-1; SOURCE 5 GENE: TLL0569; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PBAD KEYWDS PHOTOSENSOR, PHOTOREVERSIBLE, GAF DOMAIN, BILIN, PHYCOVIOLOBILIN, KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.S.BURGIE,J.A.CLINGER,M.D.MILLER,G.N.PHILLIPS JR.,R.D.VIERSTRA REVDAT 4 11-OCT-23 6PRU 1 HETSYN LINK REVDAT 3 22-JAN-20 6PRU 1 JRNL SEQRES REVDAT 2 01-JAN-20 6PRU 1 JRNL REVDAT 1 18-DEC-19 6PRU 0 JRNL AUTH E.S.BURGIE,J.A.CLINGER,M.D.MILLER,A.S.BREWSTER,P.ALLER, JRNL AUTH 2 A.BUTRYN,F.D.FULLER,S.GUL,I.D.YOUNG,C.C.PHAM,I.S.KIM, JRNL AUTH 3 A.BHOWMICK,L.J.O'RIORDAN,K.D.SUTHERLIN,J.V.HEINEMANN, JRNL AUTH 4 A.BATYUK,R.ALONSO-MORI,M.S.HUNTER,J.E.KOGLIN,J.YANO, JRNL AUTH 5 V.K.YACHANDRA,N.K.SAUTER,A.E.COHEN,J.KERN,A.M.ORVILLE, JRNL AUTH 6 G.N.PHILLIPS JR.,R.D.VIERSTRA JRNL TITL PHOTOREVERSIBLE INTERCONVERSION OF A PHYTOCHROME JRNL TITL 2 PHOTOSENSORY MODULE IN THE CRYSTALLINE STATE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 300 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 31852825 JRNL DOI 10.1073/PNAS.1912041116 REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 45272 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.840 REMARK 3 FREE R VALUE TEST SET COUNT : 2644 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.1170 - 4.1066 1.00 2479 131 0.1647 0.2014 REMARK 3 2 4.1066 - 3.2599 1.00 2349 125 0.1352 0.1527 REMARK 3 3 3.2599 - 2.8479 1.00 2336 121 0.1456 0.1961 REMARK 3 4 2.8479 - 2.5876 1.00 2316 121 0.1471 0.1739 REMARK 3 5 2.5876 - 2.4021 1.00 2296 122 0.1527 0.2064 REMARK 3 6 2.4021 - 2.2605 1.00 2281 120 0.1505 0.1694 REMARK 3 7 2.2605 - 2.1473 1.00 2287 126 0.1489 0.2080 REMARK 3 8 2.1473 - 2.0538 1.00 2277 115 0.1548 0.1917 REMARK 3 9 2.0538 - 1.9748 1.00 2282 121 0.1536 0.1791 REMARK 3 10 1.9748 - 1.9066 1.00 2259 120 0.1596 0.2304 REMARK 3 11 1.9066 - 1.8470 1.00 2269 119 0.1805 0.2396 REMARK 3 12 1.8470 - 1.7942 1.00 2266 117 0.1885 0.2609 REMARK 3 13 1.7942 - 1.7470 1.00 2269 121 0.1979 0.2558 REMARK 3 14 1.7470 - 1.7044 1.00 2243 117 0.2227 0.2760 REMARK 3 15 1.7044 - 1.6656 1.00 2276 120 0.2434 0.2762 REMARK 3 16 1.6656 - 1.6302 0.99 2174 171 0.2730 0.3400 REMARK 3 17 1.6302 - 1.5976 0.98 2121 223 0.3082 0.3684 REMARK 3 18 1.5976 - 1.5674 0.93 1967 215 0.3415 0.3762 REMARK 3 19 1.5674 - 1.5394 0.87 1881 219 0.3612 0.3617 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.20 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 435 THROUGH 584) REMARK 3 ORIGIN FOR THE GROUP (A): -2.4554 -6.2825 8.3915 REMARK 3 T TENSOR REMARK 3 T11: 0.1652 T22: 0.1670 REMARK 3 T33: 0.1770 T12: -0.0272 REMARK 3 T13: 0.0521 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 1.8217 L22: 1.9571 REMARK 3 L33: 2.3178 L12: 0.0025 REMARK 3 L13: -0.2450 L23: 0.1161 REMARK 3 S TENSOR REMARK 3 S11: 0.0090 S12: 0.0029 S13: 0.0001 REMARK 3 S21: -0.1754 S22: -0.0423 S23: -0.0083 REMARK 3 S31: 0.1455 S32: -0.1464 S33: -0.0033 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 435 THROUGH 584) REMARK 3 ORIGIN FOR THE GROUP (A): 10.4301 -11.8590 35.5380 REMARK 3 T TENSOR REMARK 3 T11: 0.1428 T22: 0.2014 REMARK 3 T33: 0.2068 T12: -0.0128 REMARK 3 T13: -0.0025 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 1.0670 L22: 2.5701 REMARK 3 L33: 2.9773 L12: -0.1449 REMARK 3 L13: 0.5568 L23: -0.2931 REMARK 3 S TENSOR REMARK 3 S11: -0.1150 S12: -0.0478 S13: 0.0273 REMARK 3 S21: -0.1051 S22: 0.0474 S23: -0.1720 REMARK 3 S31: -0.1469 S32: 0.0069 S33: -0.0003 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6PRU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1000242955. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033202 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.6.3 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45364 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.539 REMARK 200 RESOLUTION RANGE LOW (A) : 58.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 12.40 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.1 REMARK 200 DATA REDUNDANCY IN SHELL : 8.90 REMARK 200 R MERGE FOR SHELL (I) : 2.03800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.1 REMARK 200 STARTING MODEL: MODIFIED PDBID 4FOF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, MGCL2, BISTRIS, NACL, HEPES, REMARK 280 PH 5.5, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.29500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.14850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.54250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.14850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.29500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.54250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 498 -30.64 -136.56 REMARK 500 HIS A 498 -30.64 -130.57 REMARK 500 LYS A 531 94.20 85.76 REMARK 500 LYS A 531 94.20 86.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PEG B 605 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 604 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 581 O REMARK 620 2 HIS A 584 OXT 90.6 REMARK 620 3 HOH A 711 O 169.5 79.1 REMARK 620 4 HOH A 728 O 94.1 174.4 96.4 REMARK 620 5 HOH A 737 O 86.7 92.0 95.5 85.1 REMARK 620 6 HOH A 794 O 100.1 91.2 78.5 91.0 172.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 610 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 702 O REMARK 620 2 HOH A 829 O 87.4 REMARK 620 3 HOH A 829 O 72.3 75.4 REMARK 620 4 ASP B 439 OD2 122.1 146.4 125.9 REMARK 620 5 HOH B 701 O 170.7 96.4 100.4 57.2 REMARK 620 6 HOH B 701 O 108.5 94.0 169.4 63.2 79.7 REMARK 620 7 HOH B 723 O 79.6 166.7 98.2 46.5 96.1 92.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 608 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 715 O REMARK 620 2 HOH A 831 O 172.7 REMARK 620 3 HOH B 709 O 88.4 88.0 REMARK 620 4 HOH B 721 O 81.7 99.1 156.5 REMARK 620 5 HOH B 737 O 96.5 90.6 104.3 97.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 609 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 581 O REMARK 620 2 HIS B 584 OXT 83.0 REMARK 620 3 HIS B 584 OXT 80.8 4.8 REMARK 620 4 HOH B 702 O 88.9 58.2 54.2 REMARK 620 5 HOH B 708 O 101.1 175.6 174.0 120.0 REMARK 620 6 HOH B 764 O 79.3 82.1 85.9 139.8 100.0 REMARK 620 7 HOH B 841 O 129.5 112.5 117.1 140.8 66.1 57.5 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VRB A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 611 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 612 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 614 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 615 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide VRB B 602 and CYS B REMARK 800 522 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide VRB B 602 and CYS B REMARK 800 494 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4FOF RELATED DB: PDB REMARK 900 PIXJ GAF DOMAIN REMARK 900 RELATED ID: 4GLQ RELATED DB: PDB REMARK 900 PIXJ GAF DOMAIN DBREF 6PRU A 435 584 UNP Q8DLC7 Q8DLC7_THEEB 435 584 DBREF 6PRU B 435 584 UNP Q8DLC7 Q8DLC7_THEEB 435 584 SEQADV 6PRU ALA A 555 UNP Q8DLC7 CYS 555 ENGINEERED MUTATION SEQADV 6PRU ALA B 555 UNP Q8DLC7 CYS 555 ENGINEERED MUTATION SEQRES 1 A 150 SER GLU LEU ARG ASP ARG GLN ALA ILE PHE GLU THR LEU SEQRES 2 A 150 VAL ALA LYS GLY ARG GLU LEU LEU ALA CYS ASP ARG VAL SEQRES 3 A 150 ILE VAL TYR ALA PHE ASP ASP ASN TYR VAL GLY THR VAL SEQRES 4 A 150 VAL ALA GLU SER VAL ALA GLU GLY TRP PRO GLN ALA ARG SEQRES 5 A 150 ASP GLN VAL ILE GLU ASP PRO CYS PHE ARG GLU HIS TRP SEQRES 6 A 150 VAL GLU ALA TYR ARG GLN GLY ARG ILE GLN ALA THR THR SEQRES 7 A 150 ASP ILE PHE LYS ALA GLY LEU THR GLU CYS HIS LEU ASN SEQRES 8 A 150 GLN LEU ARG PRO LEU LYS VAL ARG ALA ASN LEU VAL VAL SEQRES 9 A 150 PRO MET VAL ILE ASP ASP GLN LEU PHE GLY LEU LEU ILE SEQRES 10 A 150 ALA HIS GLN ALA SER GLU PRO ARG GLN TRP GLN GLU ILE SEQRES 11 A 150 GLU ILE ASP GLN PHE SER GLU LEU ALA SER THR GLY SER SEQRES 12 A 150 LEU VAL LEU GLU ARG LEU HIS SEQRES 1 B 150 SER GLU LEU ARG ASP ARG GLN ALA ILE PHE GLU THR LEU SEQRES 2 B 150 VAL ALA LYS GLY ARG GLU LEU LEU ALA CYS ASP ARG VAL SEQRES 3 B 150 ILE VAL TYR ALA PHE ASP ASP ASN TYR VAL GLY THR VAL SEQRES 4 B 150 VAL ALA GLU SER VAL ALA GLU GLY TRP PRO GLN ALA ARG SEQRES 5 B 150 ASP GLN VAL ILE GLU ASP PRO CYS PHE ARG GLU HIS TRP SEQRES 6 B 150 VAL GLU ALA TYR ARG GLN GLY ARG ILE GLN ALA THR THR SEQRES 7 B 150 ASP ILE PHE LYS ALA GLY LEU THR GLU CYS HIS LEU ASN SEQRES 8 B 150 GLN LEU ARG PRO LEU LYS VAL ARG ALA ASN LEU VAL VAL SEQRES 9 B 150 PRO MET VAL ILE ASP ASP GLN LEU PHE GLY LEU LEU ILE SEQRES 10 B 150 ALA HIS GLN ALA SER GLU PRO ARG GLN TRP GLN GLU ILE SEQRES 11 B 150 GLU ILE ASP GLN PHE SER GLU LEU ALA SER THR GLY SER SEQRES 12 B 150 LEU VAL LEU GLU ARG LEU HIS HET VRB A 601 81 HET EDO A 602 10 HET EDO A 603 10 HET MG A 604 1 HET CL A 605 1 HET CL A 606 1 HET CL A 607 1 HET CL A 608 2 HET CL A 609 1 HET EDO B 601 10 HET VRB B 602 81 HET EDO B 603 20 HET EDO B 604 10 HET PEG B 605 15 HET EDO B 606 8 HET EDO B 607 10 HET MG B 608 1 HET MG B 609 1 HET MG B 610 1 HET CL B 611 2 HET CL B 612 1 HET CL B 613 1 HET CL B 614 1 HET CL B 615 1 HETNAM VRB PHYCOVIOLOBILIN, BLUE LIGHT-ABSORBING FORM HETNAM EDO 1,2-ETHANEDIOL HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN VRB 3-[5-[(3-ETHYL-4-METHYL-5-OXIDANYLIDENE-1,2- HETSYN 2 VRB DIHYDROPYRROL-2-YL)METHYL]-2-[[5-[(Z)-(4-ETHYL-3- HETSYN 3 VRB METHYL-5-OXIDANYLIDENE-PYR ROL-2-YLIDENE)METHYL]-3-(3- HETSYN 4 VRB HYDROXY-3-OXOPROPYL)-4-METHYL-1H-PYRROL-2-YL]METHYL]- HETSYN 5 VRB 4-METHYL-1H-PYRROL-3-YL]PROPANOIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 3 VRB 2(C33 H42 N4 O6) FORMUL 4 EDO 7(C2 H6 O2) FORMUL 6 MG 4(MG 2+) FORMUL 7 CL 10(CL 1-) FORMUL 16 PEG C4 H10 O3 FORMUL 27 HOH *302(H2 O) HELIX 1 AA1 SER A 435 ALA A 456 1 22 HELIX 2 AA2 PRO A 493 TRP A 499 1 7 HELIX 3 AA3 TRP A 499 GLN A 505 1 7 HELIX 4 AA4 ASP A 513 ALA A 517 5 5 HELIX 5 AA5 THR A 520 ARG A 528 1 9 HELIX 6 AA6 GLN A 562 HIS A 584 1 23 HELIX 7 AA7 GLU B 436 ALA B 456 1 21 HELIX 8 AA8 PRO B 493 HIS B 498 1 6 HELIX 9 AA9 TRP B 499 GLN B 505 1 7 HELIX 10 AB1 ASP B 513 ALA B 517 5 5 HELIX 11 AB2 THR B 520 ARG B 528 1 9 HELIX 12 AB3 GLN B 562 HIS B 584 1 23 SHEET 1 AA1 6 VAL A 489 ILE A 490 0 SHEET 2 AA1 6 GLY A 471 VAL A 478 -1 N GLY A 471 O ILE A 490 SHEET 3 AA1 6 ARG A 459 PHE A 465 -1 N ALA A 464 O THR A 472 SHEET 4 AA1 6 GLN A 545 GLN A 554 -1 O LEU A 549 N TYR A 463 SHEET 5 AA1 6 ALA A 534 ILE A 542 -1 N LEU A 536 O ALA A 552 SHEET 6 AA1 6 GLN A 509 THR A 511 -1 N THR A 511 O ASN A 535 SHEET 1 AA2 6 VAL B 489 ILE B 490 0 SHEET 2 AA2 6 GLY B 471 VAL B 478 -1 N GLY B 471 O ILE B 490 SHEET 3 AA2 6 ARG B 459 PHE B 465 -1 N ALA B 464 O THR B 472 SHEET 4 AA2 6 GLN B 545 ALA B 555 -1 O HIS B 553 N ARG B 459 SHEET 5 AA2 6 VAL B 532 ILE B 542 -1 N MET B 540 O GLY B 548 SHEET 6 AA2 6 GLN B 509 THR B 511 -1 N GLN B 509 O VAL B 537 LINK SG CYS A 494 C16 VRB A 601 1555 1555 1.83 LINK SG CYS A 522 C02 VRB A 601 1555 1555 1.78 LINK SG CYS B 494 C16 VRB B 602 1555 1555 1.88 LINK SG CYS B 522 C02 VRB B 602 1555 1555 1.80 LINK O GLU A 581 MG MG A 604 1555 1555 2.06 LINK OXT HIS A 584 MG MG A 604 1555 1555 2.08 LINK MG MG A 604 O HOH A 711 1555 1555 2.13 LINK MG MG A 604 O HOH A 728 1555 1555 2.07 LINK MG MG A 604 O AHOH A 737 1555 1555 1.98 LINK MG MG A 604 O HOH A 794 1555 1555 2.07 LINK O HOH A 702 MG MG B 610 1655 1555 1.95 LINK O HOH A 715 MG A MG B 608 3545 1555 2.06 LINK O AHOH A 829 MG MG B 610 1555 1555 2.03 LINK O BHOH A 829 MG MG B 610 1555 1555 2.11 LINK O HOH A 831 MG A MG B 608 3545 1555 2.09 LINK OD2AASP B 439 MG MG B 610 1555 1555 2.49 LINK O GLU B 581 MG MG B 609 1555 1555 2.31 LINK OXTAHIS B 584 MG MG B 609 1555 1555 2.70 LINK OXTBHIS B 584 MG MG B 609 1555 1555 2.80 LINK MG A MG B 608 O HOH B 709 1555 1555 2.11 LINK MG A MG B 608 O HOH B 721 1555 3545 2.21 LINK MG A MG B 608 O HOH B 737 1555 3545 2.14 LINK MG MG B 609 O HOH B 702 1555 1555 2.19 LINK MG MG B 609 O HOH B 708 1555 1555 2.05 LINK MG MG B 609 O HOH B 764 1555 1555 2.51 LINK MG MG B 609 O HOH B 841 1555 1555 2.66 LINK MG MG B 610 O AHOH B 701 1555 1555 2.20 LINK MG MG B 610 O BHOH B 701 1555 1555 1.91 LINK MG MG B 610 O BHOH B 723 1555 1555 2.12 SITE 1 AC1 23 TYR A 463 ASP A 492 PRO A 493 CYS A 494 SITE 2 AC1 23 PHE A 495 HIS A 498 TRP A 499 TYR A 503 SITE 3 AC1 23 ARG A 507 GLN A 509 THR A 520 CYS A 522 SITE 4 AC1 23 HIS A 523 GLN A 526 LEU A 530 ASN A 535 SITE 5 AC1 23 ILE A 551 HIS A 553 EDO A 602 HOH A 720 SITE 6 AC1 23 HOH A 764 HOH A 809 HIS B 498 SITE 1 AC2 5 GLN A 509 THR A 511 HIS A 523 ASN A 535 SITE 2 AC2 5 VRB A 601 SITE 1 AC3 4 TYR A 469 GLN A 545 LEU A 546 HOH A 730 SITE 1 AC4 6 GLU A 581 HIS A 584 HOH A 711 HOH A 728 SITE 2 AC4 6 HOH A 737 HOH A 794 SITE 1 AC5 3 HOH A 765 HOH A 796 HOH A 842 SITE 1 AC6 5 GLN A 505 HOH A 790 ARG B 507 HOH B 762 SITE 2 AC6 5 HOH B 847 SITE 1 AC7 3 HOH A 708 ALA B 502 HOH B 819 SITE 1 AC8 6 PHE A 495 ARG A 496 HIS A 498 TRP A 499 SITE 2 AC8 6 VAL A 500 GLU A 501 SITE 1 AC9 3 GLN A 560 HOH A 789 HOH B 817 SITE 1 AD1 6 TRP A 561 GLU A 563 ILE A 566 TYR B 469 SITE 2 AD1 6 ARG B 496 HOH B 711 SITE 1 AD2 6 GLN B 509 THR B 511 HIS B 523 ASN B 535 SITE 2 AD2 6 VRB B 602 HOH B 714 SITE 1 AD3 6 GLN A 505 ILE B 508 GLN B 509 ALA B 510 SITE 2 AD3 6 HOH B 726 HOH B 830 SITE 1 AD4 5 PHE B 465 ASP B 466 ASP B 467 LEU B 546 SITE 2 AD4 5 HOH B 744 SITE 1 AD5 8 ARG A 452 ALA A 479 GLU A 480 HOH A 729 SITE 2 AD5 8 TRP B 482 SER B 556 HOH B 712 HOH B 724 SITE 1 AD6 4 GLU A 480 ARG B 533 HOH B 724 HOH B 760 SITE 1 AD7 6 HOH A 715 HOH A 831 CL B 612 HOH B 709 SITE 2 AD7 6 HOH B 721 HOH B 737 SITE 1 AD8 7 ASP B 543 GLU B 581 HIS B 584 HOH B 702 SITE 2 AD8 7 HOH B 708 HOH B 764 HOH B 841 SITE 1 AD9 6 HOH A 702 HOH A 829 SER B 435 ASP B 439 SITE 2 AD9 6 HOH B 701 HOH B 723 SITE 1 AE1 2 THR B 512 TRP B 561 SITE 1 AE2 5 ASP A 567 HOH A 715 GLU B 501 MG B 608 SITE 2 AE2 5 HOH B 709 SITE 1 AE3 3 SER B 477 VAL B 478 HOH B 820 SITE 1 AE4 4 GLU B 476 GLN B 484 ARG B 486 HOH B 818 SITE 1 AE5 28 ARG A 507 TYR B 463 ASP B 492 PRO B 493 SITE 2 AE5 28 CYS B 494 PHE B 495 HIS B 498 TRP B 499 SITE 3 AE5 28 TYR B 503 ARG B 507 GLN B 509 THR B 520 SITE 4 AE5 28 GLU B 521 HIS B 523 LEU B 524 ASN B 525 SITE 5 AE5 28 GLN B 526 LEU B 527 LEU B 530 ASN B 535 SITE 6 AE5 28 ILE B 551 HIS B 553 EDO B 603 HOH B 729 SITE 7 AE5 28 HOH B 735 HOH B 769 HOH B 787 HOH B 803 SITE 1 AE6 25 ARG A 507 TYR B 463 ASP B 492 PRO B 493 SITE 2 AE6 25 PHE B 495 ARG B 496 GLU B 497 HIS B 498 SITE 3 AE6 25 TRP B 499 TYR B 503 ARG B 507 GLN B 509 SITE 4 AE6 25 THR B 520 CYS B 522 HIS B 523 GLN B 526 SITE 5 AE6 25 LEU B 527 LEU B 530 ASN B 535 ILE B 551 SITE 6 AE6 25 HIS B 553 EDO B 603 HOH B 729 HOH B 735 SITE 7 AE6 25 HOH B 769 CRYST1 42.590 61.085 116.297 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023480 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016371 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008599 0.00000