HEADER RNA 11-JUL-19 6PRV TITLE 58NT RNA L11-BINDING DOMAIN FROM E. COLI 23S RRNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 23S RRNA; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: 58NT RNA L11-BINDING DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 4 ORGANISM_TAXID: 562 KEYWDS RIBOSOME, 23S RRNA, RNA EXPDTA X-RAY DIFFRACTION AUTHOR G.L.CONN,M.S.DUNSTAN REVDAT 3 11-OCT-23 6PRV 1 LINK REVDAT 2 11-MAR-20 6PRV 1 JRNL REVDAT 1 08-JAN-20 6PRV 0 JRNL AUTH R.WELTY,M.RAU,S.PABIT,M.S.DUNSTAN,G.L.CONN,L.POLLACK, JRNL AUTH 2 K.B.HALL JRNL TITL RIBOSOMAL PROTEIN L11 SELECTIVELY STABILIZES A TERTIARY JRNL TITL 2 STRUCTURE OF THE GTPASE CENTER RRNA DOMAIN. JRNL REF J.MOL.BIOL. V. 432 991 2020 JRNL REFN ESSN 1089-8638 JRNL PMID 31874150 JRNL DOI 10.1016/J.JMB.2019.12.010 REMARK 2 REMARK 2 RESOLUTION. 2.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 22223 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1110 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.3600 - 5.4100 0.98 2732 144 0.1888 0.2147 REMARK 3 2 5.4100 - 4.2900 0.99 2720 143 0.1801 0.2376 REMARK 3 3 4.2900 - 3.7500 0.98 2672 140 0.1841 0.2547 REMARK 3 4 3.7500 - 3.4100 0.98 2655 140 0.2029 0.2991 REMARK 3 5 3.4100 - 3.1600 0.97 2649 139 0.2244 0.2940 REMARK 3 6 3.1600 - 2.9800 0.98 2644 138 0.2611 0.3051 REMARK 3 7 2.9800 - 2.8300 0.98 2628 139 0.2999 0.4000 REMARK 3 8 2.8300 - 2.7100 0.89 2413 127 0.4090 0.4919 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.427 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.945 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 82.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 108.3 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5588 REMARK 3 ANGLE : 1.141 8704 REMARK 3 CHIRALITY : 0.050 1156 REMARK 3 PLANARITY : 0.007 232 REMARK 3 DIHEDRAL : 16.059 2780 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 1051 THROUGH 1108) REMARK 3 ORIGIN FOR THE GROUP (A): 24.8704 4.1551 -10.0135 REMARK 3 T TENSOR REMARK 3 T11: 0.6423 T22: 0.6591 REMARK 3 T33: 0.7603 T12: -0.0134 REMARK 3 T13: -0.0346 T23: 0.0278 REMARK 3 L TENSOR REMARK 3 L11: 0.1258 L22: 0.1590 REMARK 3 L33: 0.1068 L12: -0.0712 REMARK 3 L13: 0.0826 L23: -0.1631 REMARK 3 S TENSOR REMARK 3 S11: -0.0877 S12: 0.1741 S13: 0.2134 REMARK 3 S21: 0.0036 S22: 0.0918 S23: -0.0136 REMARK 3 S31: 0.3616 S32: 0.0254 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 1051 THROUGH 1108) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6872 -3.7591 -27.4261 REMARK 3 T TENSOR REMARK 3 T11: 0.8264 T22: 1.0265 REMARK 3 T33: 0.8207 T12: -0.1345 REMARK 3 T13: 0.0476 T23: 0.1774 REMARK 3 L TENSOR REMARK 3 L11: 0.0566 L22: 0.1554 REMARK 3 L33: 0.1813 L12: 0.0267 REMARK 3 L13: -0.1060 L23: -0.0973 REMARK 3 S TENSOR REMARK 3 S11: 0.0806 S12: 0.6465 S13: 0.3254 REMARK 3 S21: -0.0931 S22: 0.0063 S23: -0.1823 REMARK 3 S31: 0.3673 S32: -0.3850 S33: -0.0002 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 1051 THROUGH 1108) REMARK 3 ORIGIN FOR THE GROUP (A): 15.7828 31.3036 -27.7201 REMARK 3 T TENSOR REMARK 3 T11: 1.0610 T22: 0.9277 REMARK 3 T33: 0.7650 T12: -0.1477 REMARK 3 T13: 0.0617 T23: 0.1683 REMARK 3 L TENSOR REMARK 3 L11: 0.2238 L22: 0.1075 REMARK 3 L33: 0.1444 L12: 0.1340 REMARK 3 L13: 0.1033 L23: 0.1279 REMARK 3 S TENSOR REMARK 3 S11: -0.3953 S12: 0.3566 S13: 0.2059 REMARK 3 S21: -0.0771 S22: -0.1026 S23: -0.1459 REMARK 3 S31: 0.8209 S32: -0.1059 S33: -0.0004 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 1051 THROUGH 1108) REMARK 3 ORIGIN FOR THE GROUP (A): 35.3199 9.0301 -60.4343 REMARK 3 T TENSOR REMARK 3 T11: 1.4539 T22: 2.3261 REMARK 3 T33: 1.4464 T12: 0.4832 REMARK 3 T13: 0.1569 T23: -1.3043 REMARK 3 L TENSOR REMARK 3 L11: 0.0491 L22: 0.0684 REMARK 3 L33: 0.4181 L12: 0.0235 REMARK 3 L13: -0.1261 L23: -0.0279 REMARK 3 S TENSOR REMARK 3 S11: -0.0511 S12: 0.0010 S13: 0.0001 REMARK 3 S21: -0.0636 S22: -0.4603 S23: 0.4549 REMARK 3 S31: 0.0143 S32: -0.2801 S33: -0.9234 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6PRV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1000242933. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JAN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22407 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.710 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.87 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1HC8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5-20 % PEG 4000, 0.6-1.2M NACL AND REMARK 280 SODIUM CACODYLATE (PH6.5), VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.80500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.80500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.80500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.80500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A1207 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O2' U B 1108 OP1 C C 1092 1545 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GTP A1051 C3' - O3' - P ANGL. DEV. = -7.4 DEGREES REMARK 500 C A1052 O3' - P - OP2 ANGL. DEV. = 17.2 DEGREES REMARK 500 C A1052 O3' - P - OP1 ANGL. DEV. = -13.8 DEGREES REMARK 500 U A1066 O3' - P - OP2 ANGL. DEV. = 6.9 DEGREES REMARK 500 A A1069 O4' - C1' - N9 ANGL. DEV. = 7.4 DEGREES REMARK 500 GTP B1051 C3' - O3' - P ANGL. DEV. = -10.2 DEGREES REMARK 500 C B1052 O3' - P - O5' ANGL. DEV. = 12.8 DEGREES REMARK 500 C B1052 O3' - P - OP2 ANGL. DEV. = 24.2 DEGREES REMARK 500 C B1052 O3' - P - OP1 ANGL. DEV. = -55.8 DEGREES REMARK 500 A B1069 O4' - C1' - N9 ANGL. DEV. = 5.2 DEGREES REMARK 500 GTP D1051 C3' - O3' - P ANGL. DEV. = 8.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1207 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C A1052 OP1 REMARK 620 2 C A1052 OP1 0.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1206 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A1059 OP1 REMARK 620 2 U A1060 OP2 75.9 REMARK 620 3 U C1081 OP1 87.6 74.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A1210 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A1069 O3' REMARK 620 2 A A1070 OP2 51.0 REMARK 620 3 C A1072 OP1 103.4 52.5 REMARK 620 4 C A1072 OP2 100.0 68.1 46.5 REMARK 620 5 A A1073 OP1 156.1 140.1 92.7 103.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A1070 OP2 REMARK 620 2 C A1072 OP1 70.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A1073 OP2 REMARK 620 2 U A1094 O4 145.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1204 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A1086 O2' REMARK 620 2 G A1087 OP2 77.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B1206 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A B1069 O3' REMARK 620 2 A B1070 OP2 47.9 REMARK 620 3 C B1072 OP1 100.0 55.0 REMARK 620 4 C B1072 O5' 128.0 95.4 43.9 REMARK 620 5 A B1073 OP1 161.1 151.0 98.2 64.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A B1070 OP2 REMARK 620 2 C B1072 OP1 99.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A B1073 OP2 REMARK 620 2 U B1094 O4 142.4 REMARK 620 3 HOH B1302 O 72.2 70.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C1202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G C1063 O6 REMARK 620 2 A C1070 OP1 78.5 REMARK 620 3 A C1070 OP2 124.2 57.6 REMARK 620 4 C C1072 OP1 149.3 124.9 86.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K C1207 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A C1070 OP2 REMARK 620 2 C C1072 OP1 76.4 REMARK 620 3 C C1072 OP2 83.1 46.0 REMARK 620 4 C C1072 O5' 118.8 47.1 43.1 REMARK 620 5 A C1073 OP1 162.0 121.1 111.6 79.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C1201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A C1073 OP2 REMARK 620 2 G C1093 O6 135.2 REMARK 620 3 U C1094 O4 133.2 91.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D1201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A D1073 OP2 REMARK 620 2 U D1094 O4 140.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D1202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A D1077 N6 REMARK 620 2 A D1089 OP1 143.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 1210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 1204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 1205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 1206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 1204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 1205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 1206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K C 1207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG D 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG D 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide GTP B 1051 and C REMARK 800 B 1052 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide GTP C 1051 and C REMARK 800 C 1052 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide GTP D 1051 and C REMARK 800 D 1052 DBREF 6PRV A 1051 1108 PDB 6PRV 6PRV 1051 1108 DBREF 6PRV B 1051 1108 PDB 6PRV 6PRV 1051 1108 DBREF 6PRV C 1051 1108 PDB 6PRV 6PRV 1051 1108 DBREF 6PRV D 1051 1108 PDB 6PRV 6PRV 1051 1108 SEQRES 1 A 58 GTP C C A G G A U G U U G G SEQRES 2 A 58 C U U A G A A G C A G C C SEQRES 3 A 58 A U C A U U U A A A G A A SEQRES 4 A 58 A G C G U A A U A G C U C SEQRES 5 A 58 A C U G G U SEQRES 1 B 58 GTP C C A G G A U G U U G G SEQRES 2 B 58 C U U A G A A G C A G C C SEQRES 3 B 58 A U C A U U U A A A G A A SEQRES 4 B 58 A G C G U A A U A G C U C SEQRES 5 B 58 A C U G G U SEQRES 1 C 58 GTP C C A G G A U G U U G G SEQRES 2 C 58 C U U A G A A G C A G C C SEQRES 3 C 58 A U C A U U U A A A G A A SEQRES 4 C 58 A G C G U A A U A G C U C SEQRES 5 C 58 A C U G G U SEQRES 1 D 58 GTP C C A G G A U G U U G G SEQRES 2 D 58 C U U A G A A G C A G C C SEQRES 3 D 58 A U C A U U U A A A G A A SEQRES 4 D 58 A G C G U A A U A G C U C SEQRES 5 D 58 A C U G G U HET GTP A1051 32 HET GTP B1051 32 HET GTP C1051 32 HET GTP D1051 32 HET MG A1201 1 HET MG A1202 1 HET MG A1203 1 HET MG A1204 1 HET MG A1205 1 HET MG A1206 1 HET MG A1207 1 HET MG A1208 1 HET MG A1209 1 HET K A1210 1 HET MG B1201 1 HET MG B1202 1 HET MG B1203 1 HET MG B1204 1 HET MG B1205 1 HET K B1206 1 HET MG C1201 1 HET MG C1202 1 HET MG C1203 1 HET MG C1204 1 HET MG C1205 1 HET MG C1206 1 HET K C1207 1 HET MG D1201 1 HET MG D1202 1 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM K POTASSIUM ION FORMUL 1 GTP 4(C10 H16 N5 O14 P3) FORMUL 5 MG 22(MG 2+) FORMUL 14 K 3(K 1+) FORMUL 30 HOH *2(H2 O) LINK O3' GTP A1051 P C A1052 1555 1555 1.56 LINK O3' GTP B1051 P C B1052 1555 1555 1.56 LINK O3' GTP C1051 P C C1052 1555 1555 1.56 LINK O3' GTP D1051 P C D1052 1555 1555 1.56 LINK OP1 C A1052 MG MG A1207 1555 1555 2.28 LINK OP1 C A1052 MG MG A1207 1555 2655 2.28 LINK OP1 G A1059 MG MG A1206 1555 1555 2.60 LINK OP2 U A1060 MG MG A1206 1555 1555 2.70 LINK O3' A A1069 K K A1210 1555 1555 3.00 LINK OP2 A A1070 MG MG A1202 1555 1555 2.09 LINK OP2 A A1070 K K A1210 1555 1555 2.82 LINK OP1 C A1072 MG MG A1202 1555 1555 2.45 LINK OP1 C A1072 K K A1210 1555 1555 3.11 LINK OP2 C A1072 K K A1210 1555 1555 3.43 LINK OP2 A A1073 MG MG A1201 1555 1555 2.16 LINK OP1 A A1073 K K A1210 1555 1555 2.63 LINK O2' A A1086 MG MG A1204 1555 1555 2.95 LINK OP2 G A1087 MG MG A1204 1555 1555 2.89 LINK O4 U A1094 MG MG A1201 1555 1555 1.82 LINK MG MG A1206 OP1 U C1081 1555 1555 2.28 LINK O3' A B1069 K K B1206 1555 1555 3.15 LINK OP2 A B1070 MG MG B1202 1555 1555 1.89 LINK OP2 A B1070 K K B1206 1555 1555 3.07 LINK OP1 C B1072 MG MG B1202 1555 1555 2.01 LINK OP1 C B1072 K K B1206 1555 1555 3.35 LINK O5' C B1072 K K B1206 1555 1555 3.49 LINK OP2 A B1073 MG MG B1201 1555 1555 1.94 LINK OP1 A B1073 K K B1206 1555 1555 2.64 LINK O4 U B1094 MG MG B1201 1555 1555 2.00 LINK OP1 A B1098 MG MG B1205 1555 1555 2.75 LINK MG MG B1201 O HOH B1302 1555 1555 2.60 LINK O6 G C1063 MG MG C1202 1555 1555 2.96 LINK OP1 A C1070 MG MG C1202 1555 1555 2.38 LINK OP2 A C1070 MG MG C1202 1555 1555 2.88 LINK OP2 A C1070 K K C1207 1555 1555 2.53 LINK OP1 C C1072 MG MG C1202 1555 1555 2.29 LINK OP1 C C1072 K K C1207 1555 1555 3.18 LINK OP2 C C1072 K K C1207 1555 1555 3.37 LINK O5' C C1072 K K C1207 1555 1555 3.24 LINK OP2 A C1073 MG MG C1201 1555 1555 1.87 LINK OP1 A C1073 K K C1207 1555 1555 2.53 LINK O4 U C1081 MG MG C1205 1555 1555 2.06 LINK O2' A C1086 MG MG C1204 1555 1555 2.74 LINK O6 G C1093 MG MG C1201 1555 1555 2.77 LINK O4 U C1094 MG MG C1201 1555 1555 2.03 LINK OP2 A D1073 MG MG D1201 1555 1555 2.17 LINK N6 A D1077 MG MG D1202 1555 1555 2.09 LINK OP1 A D1089 MG MG D1202 1555 1555 1.98 LINK O4 U D1094 MG MG D1201 1555 1555 2.53 SITE 1 AC1 3 A A1073 G A1093 U A1094 SITE 1 AC2 2 A A1070 C A1072 SITE 1 AC3 3 A A1057 A A1086 G A1087 SITE 1 AC4 1 A A1069 SITE 1 AC5 3 G A1059 U A1060 U C1081 SITE 1 AC6 1 C A1052 SITE 1 AC7 2 G A1059 U A1060 SITE 1 AC8 4 A A1069 A A1070 C A1072 A A1073 SITE 1 AC9 4 A B1073 G B1093 U B1094 HOH B1302 SITE 1 AD1 3 G B1063 A B1070 C B1072 SITE 1 AD2 1 G B1056 SITE 1 AD3 1 G B1071 SITE 1 AD4 4 C A1064 A B1070 U B1097 A B1098 SITE 1 AD5 4 A B1069 A B1070 C B1072 A B1073 SITE 1 AD6 4 C C1072 A C1073 G C1093 U C1094 SITE 1 AD7 3 G C1063 A C1070 C C1072 SITE 1 AD8 1 G C1056 SITE 1 AD9 3 A C1057 A C1086 G C1087 SITE 1 AE1 1 U C1081 SITE 1 AE2 2 C C1079 A C1080 SITE 1 AE3 3 A C1070 C C1072 A C1073 SITE 1 AE4 2 A D1073 U D1094 SITE 1 AE5 3 A D1077 U D1078 A D1089 SITE 1 AE6 7 C B1053 G B1107 U B1108 G C1091 SITE 2 AE6 7 GTP D1051 G D1107 U D1108 SITE 1 AE7 6 GTP A1051 G A1107 U A1108 C C1053 SITE 2 AE7 6 G C1107 U C1108 SITE 1 AE8 5 GTP B1051 U B1108 C D1053 G D1107 SITE 2 AE8 5 U D1108 CRYST1 89.610 73.610 130.280 90.00 100.96 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011159 0.000000 0.002161 0.00000 SCALE2 0.000000 0.013585 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007818 0.00000 HETATM 1 PG GTP A1051 49.446 2.780 -8.640 1.00136.50 P ANISOU 1 PG GTP A1051 16752 17060 18051 1460 -344 59 P HETATM 2 O1G GTP A1051 49.868 2.227 -9.984 1.00149.35 O ANISOU 2 O1G GTP A1051 18402 18748 19596 1468 -311 98 O HETATM 3 O2G GTP A1051 50.666 2.826 -7.754 1.00111.81 O ANISOU 3 O2G GTP A1051 13621 13899 14962 1553 -359 32 O HETATM 4 O3G GTP A1051 48.413 1.877 -8.007 1.00124.29 O ANISOU 4 O3G GTP A1051 15340 15463 16420 1418 -329 -6 O HETATM 5 O3B GTP A1051 48.845 4.264 -8.887 1.00120.37 O ANISOU 5 O3B GTP A1051 14548 15045 16141 1399 -380 119 O HETATM 6 PB GTP A1051 47.492 4.549 -9.732 1.00 97.84 P ANISOU 6 PB GTP A1051 11664 12228 13282 1294 -374 156 P HETATM 7 O1B GTP A1051 47.739 5.557 -10.840 1.00106.91 O ANISOU 7 O1B GTP A1051 12667 13446 14507 1275 -386 241 O HETATM 8 O2B GTP A1051 46.933 3.254 -10.296 1.00 74.74 O ANISOU 8 O2B GTP A1051 8880 9308 10211 1263 -333 130 O HETATM 9 O3A GTP A1051 46.502 5.253 -8.671 1.00 82.85 O ANISOU 9 O3A GTP A1051 9731 10282 11468 1246 -405 131 O HETATM 10 PA GTP A1051 46.632 5.097 -7.062 1.00107.78 P ANISOU 10 PA GTP A1051 12945 13360 14646 1291 -422 58 P HETATM 11 O1A GTP A1051 45.336 5.597 -6.438 1.00 92.84 O ANISOU 11 O1A GTP A1051 11035 11437 12802 1221 -440 44 O HETATM 12 O2A GTP A1051 46.930 3.668 -6.671 1.00102.78 O ANISOU 12 O2A GTP A1051 12474 12691 13885 1333 -391 -7 O HETATM 13 O5' GTP A1051 47.778 6.065 -6.470 1.00 89.12 O ANISOU 13 O5' GTP A1051 10474 10987 12402 1364 -460 72 O HETATM 14 C5' GTP A1051 47.308 7.094 -5.625 1.00 73.73 C ANISOU 14 C5' GTP A1051 8444 9006 10566 1343 -499 69 C HETATM 15 C4' GTP A1051 48.419 7.863 -4.916 1.00 79.53 C ANISOU 15 C4' GTP A1051 9097 9719 11402 1417 -536 71 C HETATM 16 O4' GTP A1051 49.600 7.918 -5.684 1.00 63.70 O ANISOU 16 O4' GTP A1051 7042 7758 9402 1470 -532 115 O HETATM 17 C3' GTP A1051 47.962 9.294 -4.714 1.00 92.51 C ANISOU 17 C3' GTP A1051 10600 11366 13185 1380 -579 108 C HETATM 18 O3' GTP A1051 47.451 9.485 -3.411 1.00 86.75 O ANISOU 18 O3' GTP A1051 9898 10572 12492 1379 -600 54 O HETATM 19 C2' GTP A1051 49.181 10.142 -5.047 1.00 94.47 C ANISOU 19 C2' GTP A1051 10724 11643 13526 1434 -607 161 C HETATM 20 O2' GTP A1051 49.959 10.401 -3.900 1.00 86.79 O ANISOU 20 O2' GTP A1051 9746 10618 12610 1503 -638 125 O HETATM 21 C1' GTP A1051 49.961 9.257 -6.003 1.00 76.49 C ANISOU 21 C1' GTP A1051 8500 9410 11153 1469 -569 179 C HETATM 22 N9 GTP A1051 49.523 9.514 -7.397 1.00 60.64 N ANISOU 22 N9 GTP A1051 6431 7473 9137 1409 -553 247 N HETATM 23 C8 GTP A1051 49.109 8.512 -8.238 1.00 57.83 C ANISOU 23 C8 GTP A1051 6168 7146 8658 1378 -509 245 C HETATM 24 N7 GTP A1051 48.775 9.021 -9.438 1.00 58.72 N ANISOU 24 N7 GTP A1051 6196 7323 8792 1327 -504 314 N HETATM 25 C5 GTP A1051 48.978 10.352 -9.396 1.00 63.46 C ANISOU 25 C5 GTP A1051 6646 7937 9528 1324 -545 362 C HETATM 26 C6 GTP A1051 48.780 11.319 -10.379 1.00 66.69 C ANISOU 26 C6 GTP A1051 6922 8406 10011 1279 -558 439 C HETATM 27 O6 GTP A1051 48.352 11.021 -11.503 1.00 76.35 O ANISOU 27 O6 GTP A1051 8154 9681 11175 1233 -530 475 O HETATM 28 N1 GTP A1051 49.064 12.625 -10.081 1.00 65.18 N ANISOU 28 N1 GTP A1051 6590 8214 9962 1287 -604 476 N HETATM 29 C2 GTP A1051 49.537 12.959 -8.832 1.00 70.77 C ANISOU 29 C2 GTP A1051 7291 8863 10736 1338 -636 436 C HETATM 30 N2 GTP A1051 49.785 14.244 -8.631 1.00 71.54 N ANISOU 30 N2 GTP A1051 7248 8962 10971 1341 -682 475 N HETATM 31 N3 GTP A1051 49.747 11.999 -7.842 1.00 60.66 N ANISOU 31 N3 GTP A1051 6142 7523 9381 1384 -623 358 N HETATM 32 C4 GTP A1051 49.461 10.694 -8.121 1.00 64.87 C ANISOU 32 C4 GTP A1051 6816 8057 9774 1376 -577 321 C