HEADER OXIDOREDUCTASE 15-JUL-19 6PT7 TITLE STRUCTURE OF KATE1 CATALASE FROM ACINETOBACTER SP. VER3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATALASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER SP. VER3; SOURCE 3 ORGANISM_TAXID: 466088; SOURCE 4 GENE: CL42_01515; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CATALASE, PEROXIDE, NADP, COLD-ADAPTED, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.GONZALEZ,M.G.SARTORIO,N.CORTEZ REVDAT 3 11-OCT-23 6PT7 1 REMARK REVDAT 2 10-MAR-21 6PT7 1 JRNL REVDAT 1 22-JUL-20 6PT7 0 JRNL AUTH M.G.SARTORIO,N.CORTEZ,J.M.GONZALEZ JRNL TITL STRUCTURE AND FUNCTIONAL PROPERTIES OF THE COLD-ADAPTED JRNL TITL 2 CATALASE FROM ACINETOBACTER SP. VER3 NATIVE TO THE ATACAMA JRNL TITL 3 PLATEAU IN NORTHERN ARGENTINA JRNL REF ACTA CRYSTALLOGR.,SECT.D V. D77 369 2021 JRNL REFN ESSN 1399-0047 JRNL DOI 10.1107/S2059798321000929 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0257 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 52559 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2662 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3807 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.3830 REMARK 3 BIN FREE R VALUE SET COUNT : 203 REMARK 3 BIN FREE R VALUE : 0.3840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4005 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 95 REMARK 3 SOLVENT ATOMS : 237 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.38000 REMARK 3 B22 (A**2) : 3.38000 REMARK 3 B33 (A**2) : -6.77000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.134 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.131 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.134 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.422 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4225 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3691 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5759 ; 1.929 ; 1.691 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8560 ; 1.374 ; 1.600 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 501 ; 7.449 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 257 ;34.522 ;22.101 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 647 ;15.492 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;17.570 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 520 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4836 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 971 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6PT7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1000242197. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55226 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 49.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 14.60 REMARK 200 R MERGE (I) : 0.17830 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2ISA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM HEPES PH 7.5, 0.8 M NA-K REMARK 280 TARTRATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 56.26900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 56.26900 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 157.31700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 56.26900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 78.65850 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 56.26900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 235.97550 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 56.26900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 235.97550 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.26900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 78.65850 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 56.26900 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 56.26900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 157.31700 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 56.26900 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 56.26900 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 157.31700 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 56.26900 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 235.97550 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 56.26900 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 78.65850 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 56.26900 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 78.65850 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 56.26900 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 235.97550 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 56.26900 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 56.26900 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 157.31700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 51690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 56900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -233.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 112.53800 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 112.53800 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 112.53800 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 112.53800 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 733 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 759 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 903 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 8 -106.11 81.14 REMARK 500 ALA A 111 46.34 -96.77 REMARK 500 LYS A 155 -141.75 -103.73 REMARK 500 SER A 203 -62.44 61.78 REMARK 500 VAL A 299 -53.48 -127.86 REMARK 500 ASP A 374 -137.51 68.97 REMARK 500 TRP A 397 42.39 70.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 100 THR A 101 149.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 602 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 344 OH REMARK 620 2 HEM A 602 NA 88.0 REMARK 620 3 HEM A 602 NB 88.5 87.9 REMARK 620 4 HEM A 602 NC 88.9 176.6 90.5 REMARK 620 5 HEM A 602 ND 85.4 91.9 173.9 89.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 603 DBREF1 6PT7 A 7 506 UNP A0A031LXI5_9GAMM DBREF2 6PT7 A A0A031LXI5 7 506 SEQRES 1 A 500 LYS CYS PRO VAL THR HIS LEU THR THR ASP ALA GLY ALA SEQRES 2 A 500 PRO VAL VAL ASP ASN GLN ASN SER MET THR ALA GLY ALA SEQRES 3 A 500 ARG GLY PRO LEU LEU ALA GLN ASP LEU TRP LEU ASN GLU SEQRES 4 A 500 LYS LEU GLY ASN PHE VAL ARG GLU VAL ILE PRO GLU ARG SEQRES 5 A 500 ARG OMT HIS ALA LYS GLY SER GLY ALA PHE GLY THR PHE SEQRES 6 A 500 THR VAL THR HIS ASP ILE THR GLN TYR THR ARG ALA LYS SEQRES 7 A 500 LEU PHE SER GLU ILE GLY LYS LYS THR ASP ILE PHE VAL SEQRES 8 A 500 ARG PHE SER THR VAL ALA GLY GLU ARG GLY ALA ALA ASP SEQRES 9 A 500 ALA GLU ARG ASP ILE ARG GLY PHE ALA MET LYS PHE TYR SEQRES 10 A 500 THR GLU GLU GLY ASN TRP ASP LEU VAL GLY ASN ASN THR SEQRES 11 A 500 PRO VAL PHE PHE LEU ARG ASP ALA ARG LYS PHE PRO ASP SEQRES 12 A 500 LEU ASN LYS ALA VAL LYS ARG ASP PRO LYS THR ASN LYS SEQRES 13 A 500 ARG SER ALA THR ASN ASN TRP ASP PHE TRP THR LEU LEU SEQRES 14 A 500 PRO GLU ALA LEU HIS GLN VAL THR ILE VAL MET SER ASP SEQRES 15 A 500 ARG GLY ILE PRO ASP GLY TYR ARG HIS MET HIS GLY PHE SEQRES 16 A 500 GLY SER HIS THR PHE SER PHE ILE ASN ALA ASN ASN GLU SEQRES 17 A 500 ARG PHE TRP VAL LYS PHE HIS MET ARG THR GLN GLN GLY SEQRES 18 A 500 ILE LYS ASN LEU THR ASP ALA GLU ALA GLU ALA ILE ILE SEQRES 19 A 500 ALA LYS ASP ARG GLU SER SER GLN THR ASP LEU PHE ASP SEQRES 20 A 500 ALA ILE GLU ARG GLY ASP PHE PRO LYS TRP LYS MET TYR SEQRES 21 A 500 VAL GLN ILE MET PRO GLU LEU ASP ALA GLU LYS VAL PRO SEQRES 22 A 500 TYR HIS PRO PHE ASP LEU THR LYS VAL TRP PRO LYS GLY SEQRES 23 A 500 ASP TYR PRO LEU ILE GLU VAL GLY GLU PHE GLU LEU ASN SEQRES 24 A 500 ARG ASN PRO GLU ASN TYR PHE GLN ASP VAL GLU GLN ALA SEQRES 25 A 500 ALA PHE ALA PRO SER ASN LEU VAL PRO GLY ILE SER PHE SEQRES 26 A 500 SER PRO ASP ARG MET LEU GLN ALA ARG LEU PHE ASN TYR SEQRES 27 A 500 ALA ASP ALA ALA ARG TYR ARG VAL GLY VAL ASN HIS TYR SEQRES 28 A 500 GLN ILE PRO VAL ASN ALA PRO ARG CYS PRO VAL HIS SER SEQRES 29 A 500 ASN ARG ARG ASP GLY GLN GLY ARG THR ASP GLY ASN TYR SEQRES 30 A 500 GLY ALA LEU PRO HIS TYR GLU PRO ASN SER PHE SER GLN SEQRES 31 A 500 TRP GLN GLU GLN PRO GLN TYR LYS GLU PRO PRO LEU LYS SEQRES 32 A 500 ILE SER GLY ALA ALA ASP PHE TRP ASP TYR ARG GLU ASP SEQRES 33 A 500 ASP ASN ASP TYR PHE SER GLN PRO ARG ALA LEU PHE ASN SEQRES 34 A 500 LEU MET ASN ASP GLN GLN LYS GLN ALA LEU PHE ASP ASN SEQRES 35 A 500 THR ALA ALA ALA MET GLY ASP ALA LEU ASP PHE ILE LYS SEQRES 36 A 500 TYR ARG HIS ILE ARG ASN CYS TYR ALA CYS ASP PRO ALA SEQRES 37 A 500 TYR GLY GLU GLY VAL ALA LYS ALA LEU GLY MET THR VAL SEQRES 38 A 500 ALA ASP ALA GLN ALA ALA ARG ALA THR ASP PRO ALA GLN SEQRES 39 A 500 GLY ASN PRO GLY LEU LEU MODRES 6PT7 OMT A 60 MET MODIFIED RESIDUE HET OMT A 60 10 HET NAP A 601 48 HET HEM A 602 43 HET CL A 603 1 HET UNX A 604 1 HET UNX A 605 1 HET UNX A 606 1 HETNAM OMT S-DIOXYMETHIONINE HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM CL CHLORIDE ION HETNAM UNX UNKNOWN ATOM OR ION HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN HEM HEME FORMUL 1 OMT C5 H11 N O4 S FORMUL 2 NAP C21 H28 N7 O17 P3 FORMUL 3 HEM C34 H32 FE N4 O4 FORMUL 4 CL CL 1- FORMUL 5 UNX 3(X) FORMUL 8 HOH *237(H2 O) HELIX 1 AA1 ASP A 40 VAL A 51 1 12 HELIX 2 AA2 ALA A 83 SER A 87 5 5 HELIX 3 AA3 ASP A 143 ARG A 145 5 3 HELIX 4 AA4 LYS A 146 LYS A 155 1 10 HELIX 5 AA5 SER A 164 LEU A 174 1 11 HELIX 6 AA6 LEU A 175 GLU A 177 5 3 HELIX 7 AA7 ALA A 178 SER A 187 1 10 HELIX 8 AA8 ASP A 188 ILE A 191 5 4 HELIX 9 AA9 GLY A 194 MET A 198 5 5 HELIX 10 AB1 THR A 232 ASP A 243 1 12 HELIX 11 AB2 GLU A 245 ARG A 257 1 13 HELIX 12 AB3 LEU A 273 LYS A 277 5 5 HELIX 13 AB4 ASN A 310 VAL A 315 1 6 HELIX 14 AB5 ASP A 334 GLY A 353 1 20 HELIX 15 AB6 ASN A 355 ALA A 363 5 9 HELIX 16 AB7 GLN A 400 LYS A 404 5 5 HELIX 17 AB8 ASP A 418 ASP A 423 1 6 HELIX 18 AB9 PHE A 427 MET A 437 1 11 HELIX 19 AC1 ASN A 438 GLY A 454 1 17 HELIX 20 AC2 LEU A 457 ASP A 472 1 16 HELIX 21 AC3 ASP A 472 LEU A 483 1 12 HELIX 22 AC4 THR A 486 ARG A 494 1 9 SHEET 1 AA111 ILE A 329 SER A 330 0 SHEET 2 AA111 PHE A 206 ILE A 209 -1 N SER A 207 O SER A 330 SHEET 3 AA111 ARG A 215 THR A 224 -1 O VAL A 218 N PHE A 206 SHEET 4 AA111 LYS A 262 PRO A 271 -1 O MET A 270 N TRP A 217 SHEET 5 AA111 ILE A 297 ARG A 306 -1 O ILE A 297 N VAL A 267 SHEET 6 AA111 GLY A 64 VAL A 73 -1 N THR A 72 O GLU A 301 SHEET 7 AA111 LYS A 92 SER A 100 -1 O THR A 93 N PHE A 71 SHEET 8 AA111 GLY A 117 THR A 124 -1 O ALA A 119 N ARG A 98 SHEET 9 AA111 GLY A 127 ASN A 134 -1 O GLY A 133 N PHE A 118 SHEET 10 AA111 GLY A 200 PHE A 201 -1 O PHE A 201 N ASN A 134 SHEET 11 AA111 ARG A 215 THR A 224 -1 O MET A 222 N GLY A 200 LINK C ARG A 59 N OMT A 60 1555 1555 1.34 LINK C OMT A 60 N HIS A 61 1555 1555 1.35 LINK OH TYR A 344 FE HEM A 602 1555 1555 1.93 CISPEP 1 GLU A 390 PRO A 391 0 7.63 SITE 1 AC1 15 HIS A 180 SER A 187 ARG A 189 HIS A 199 SITE 2 AC1 15 HIS A 221 ARG A 223 VAL A 288 TRP A 289 SITE 3 AC1 15 PRO A 290 LYS A 291 GLN A 429 LEU A 433 SITE 4 AC1 15 LEU A 436 HOH A 722 HOH A 848 SITE 1 AC2 21 VAL A 51 ARG A 58 HIS A 61 ARG A 98 SITE 2 AC2 21 GLY A 117 VAL A 132 GLY A 133 ASN A 134 SITE 3 AC2 21 ALA A 144 PHE A 147 SER A 203 LEU A 285 SITE 4 AC2 21 PHE A 320 MET A 336 ARG A 340 ASN A 343 SITE 5 AC2 21 TYR A 344 ARG A 351 HOH A 730 HOH A 758 SITE 6 AC2 21 HOH A 788 SITE 1 AC3 2 ARG A 52 TYR A 350 CRYST1 112.538 112.538 314.634 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008886 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008886 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003178 0.00000