HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 17-JUL-19 6PU7 TITLE HUMAN IDO1 IN COMPLEX WITH COMPOUND 17 (N-{2-[(4-{N-[(7S)-4- TITLE 2 FLUOROBICYCLO[4.2.0]OCTA-1,3,5-TRIEN-7-YL]-N'-HYDROXYCARBAMIMIDOYL}- TITLE 3 1,2,5-OXADIAZOL-3-YL)SULFANYL]ETHYL}ACETAMIDE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: INDOLEAMINE 2,3-DIOXYGENASE 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL TRUNCATED (UNP RESIDUES 11-402); COMPND 5 SYNONYM: IDO-1,INDOLEAMINE-PYRROLE 2,3-DIOXYGENASE; COMPND 6 EC: 1.13.11.52; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IDO1, IDO, INDO; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INDOLEAMINE, DIOXYGENASE, HEME, INHIBITOR, OXIDOREDUCTASE- KEYWDS 2 OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.A.LESBURG REVDAT 1 04-DEC-19 6PU7 0 JRNL AUTH H.ZHANG,K.LIU,Q.PU,A.ACHAB,M.J.ARDOLINO,M.CHENG,Y.DENG, JRNL AUTH 2 A.C.DOTY,H.FERGUSON,X.FRADERA,I.KNEMEYER,R.KURUKULASURIYA, JRNL AUTH 3 Y.H.LAM,C.A.LESBURG,T.A.MARTINOT,M.A.MCGOWAN,J.R.MILLER, JRNL AUTH 4 K.OTTE,P.J.BIJU,N.SCIAMMETTA,N.SOLBAN,W.YU,H.ZHOU,X.WANG, JRNL AUTH 5 D.J.BENNETT,Y.HAN JRNL TITL DISCOVERY OF AMINO-CYCLOBUTARENE-DERIVED JRNL TITL 2 INDOLEAMINE-2,3-DIOXYGENASE 1 (IDO1) INHIBITORS FOR CANCER JRNL TITL 3 IMMUNOTHERAPY. JRNL REF ACS MED.CHEM.LETT. V. 10 1530 2019 JRNL REFN ISSN 1948-5875 JRNL PMID 31749906 JRNL DOI 10.1021/ACSMEDCHEMLETT.9B00344 REMARK 2 REMARK 2 RESOLUTION. 2.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 77.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 38080 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1064 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.43 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2826 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5946 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 136 REMARK 3 SOLVENT ATOMS : 215 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.57000 REMARK 3 B22 (A**2) : 1.06000 REMARK 3 B33 (A**2) : 1.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.347 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.253 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.190 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.970 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6229 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 5632 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8486 ; 1.148 ; 2.015 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13063 ; 0.930 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 763 ; 5.501 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 269 ;34.753 ;24.275 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1032 ;13.144 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;13.583 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 919 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6939 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1234 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1280 ; 0.166 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 5507 ; 0.131 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2965 ; 0.156 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 3058 ; 0.076 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 226 ; 0.096 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.182 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 41 ; 0.125 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.084 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 10 B 107 REMARK 3 ORIGIN FOR THE GROUP (A): 4.2420 25.0160 -27.6440 REMARK 3 T TENSOR REMARK 3 T11: -0.1671 T22: -0.2341 REMARK 3 T33: -0.0597 T12: 0.0257 REMARK 3 T13: -0.0141 T23: 0.0898 REMARK 3 L TENSOR REMARK 3 L11: 5.2013 L22: 2.4894 REMARK 3 L33: 2.4426 L12: -0.5346 REMARK 3 L13: -1.3372 L23: -0.2948 REMARK 3 S TENSOR REMARK 3 S11: -0.0883 S12: -0.3856 S13: -0.2303 REMARK 3 S21: 0.0162 S22: -0.0553 S23: -0.1673 REMARK 3 S31: 0.1364 S32: 0.4014 S33: 0.1435 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 108 B 335 REMARK 3 ORIGIN FOR THE GROUP (A): -15.0370 29.7280 -24.3920 REMARK 3 T TENSOR REMARK 3 T11: -0.0747 T22: -0.1969 REMARK 3 T33: -0.1431 T12: 0.0159 REMARK 3 T13: -0.0084 T23: 0.0468 REMARK 3 L TENSOR REMARK 3 L11: 4.5294 L22: 0.6144 REMARK 3 L33: 1.3964 L12: -1.0103 REMARK 3 L13: -1.8771 L23: 0.2083 REMARK 3 S TENSOR REMARK 3 S11: -0.0118 S12: 0.0025 S13: -0.1382 REMARK 3 S21: 0.0423 S22: -0.0355 S23: 0.1361 REMARK 3 S31: -0.0275 S32: -0.1441 S33: 0.0473 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 336 B 402 REMARK 3 ORIGIN FOR THE GROUP (A): -25.6820 32.4520 -36.1370 REMARK 3 T TENSOR REMARK 3 T11: -0.0873 T22: 0.1449 REMARK 3 T33: -0.0603 T12: 0.1047 REMARK 3 T13: -0.0371 T23: 0.0471 REMARK 3 L TENSOR REMARK 3 L11: 6.7042 L22: 1.7351 REMARK 3 L33: 8.7601 L12: 1.2943 REMARK 3 L13: -4.3137 L23: -1.8598 REMARK 3 S TENSOR REMARK 3 S11: -0.0793 S12: 1.1606 S13: -0.3016 REMARK 3 S21: -0.4789 S22: -0.2117 S23: 0.1976 REMARK 3 S31: 0.2956 S32: -0.7681 S33: 0.2909 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 107 REMARK 3 ORIGIN FOR THE GROUP (A): -43.1170 0.9960 -17.4550 REMARK 3 T TENSOR REMARK 3 T11: -0.1131 T22: 0.0732 REMARK 3 T33: 0.0144 T12: 0.0174 REMARK 3 T13: 0.0167 T23: -0.0777 REMARK 3 L TENSOR REMARK 3 L11: 4.2484 L22: 2.3705 REMARK 3 L33: 3.3890 L12: 0.7305 REMARK 3 L13: 1.3379 L23: 0.6401 REMARK 3 S TENSOR REMARK 3 S11: -0.0744 S12: -0.3074 S13: 0.3804 REMARK 3 S21: 0.0173 S22: -0.3407 S23: 0.5981 REMARK 3 S31: -0.0985 S32: -0.8990 S33: 0.4152 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 108 A 335 REMARK 3 ORIGIN FOR THE GROUP (A): -23.7210 1.4280 -12.2640 REMARK 3 T TENSOR REMARK 3 T11: -0.1121 T22: -0.1568 REMARK 3 T33: -0.1423 T12: -0.0065 REMARK 3 T13: 0.0251 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 3.4144 L22: 1.1867 REMARK 3 L33: 2.0081 L12: 0.6737 REMARK 3 L13: 1.6041 L23: 0.8481 REMARK 3 S TENSOR REMARK 3 S11: -0.0871 S12: 0.0239 S13: 0.1364 REMARK 3 S21: 0.0159 S22: -0.0831 S23: 0.0903 REMARK 3 S31: -0.1140 S32: -0.0387 S33: 0.1702 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 336 A 401 REMARK 3 ORIGIN FOR THE GROUP (A): -12.4440 -7.2500 -19.7660 REMARK 3 T TENSOR REMARK 3 T11: -0.1574 T22: -0.1805 REMARK 3 T33: -0.1246 T12: 0.0408 REMARK 3 T13: 0.0209 T23: -0.0442 REMARK 3 L TENSOR REMARK 3 L11: 3.2283 L22: 5.3164 REMARK 3 L33: 5.1610 L12: 1.9666 REMARK 3 L13: 0.4544 L23: 2.8770 REMARK 3 S TENSOR REMARK 3 S11: -0.0108 S12: 0.2332 S13: -0.1992 REMARK 3 S21: -0.1601 S22: 0.0102 S23: -0.1431 REMARK 3 S31: -0.1844 S32: 0.2137 S33: 0.0006 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 6PU7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1000243087. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100.000 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39145 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.430 REMARK 200 RESOLUTION RANGE LOW (A) : 77.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.44300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.610 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: UNAVAILABLE, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 43.21350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.86250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.25800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.86250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.21350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.25800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 362 REMARK 465 LYS A 363 REMARK 465 GLU A 364 REMARK 465 ASN A 365 REMARK 465 LYS A 366 REMARK 465 THR A 367 REMARK 465 SER A 368 REMARK 465 GLU A 369 REMARK 465 ASP A 370 REMARK 465 PRO A 371 REMARK 465 SER A 372 REMARK 465 LYS A 373 REMARK 465 LEU A 374 REMARK 465 GLU A 375 REMARK 465 ALA A 376 REMARK 465 LYS A 377 REMARK 465 GLY A 378 REMARK 465 GLU A 402 REMARK 465 PRO B 362 REMARK 465 LYS B 363 REMARK 465 GLU B 364 REMARK 465 ASN B 365 REMARK 465 LYS B 366 REMARK 465 THR B 367 REMARK 465 SER B 368 REMARK 465 GLU B 369 REMARK 465 ASP B 370 REMARK 465 PRO B 371 REMARK 465 SER B 372 REMARK 465 LYS B 373 REMARK 465 LEU B 374 REMARK 465 GLU B 375 REMARK 465 ALA B 376 REMARK 465 LYS B 377 REMARK 465 GLY B 378 REMARK 465 THR B 379 REMARK 465 GLY B 380 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MET A 10 CE REMARK 480 ILE A 11 CD1 REMARK 480 LYS A 13 CE NZ REMARK 480 LYS A 44 CD CE NZ REMARK 480 LYS A 61 CE NZ REMARK 480 LYS A 101 CD CE NZ REMARK 480 ILE A 107 CD1 REMARK 480 LYS A 116 CE NZ REMARK 480 LYS A 135 NZ REMARK 480 LYS A 141 CE NZ REMARK 480 GLU A 146 CD OE1 OE2 REMARK 480 LYS A 186 CE NZ REMARK 480 LYS A 198 NZ REMARK 480 LYS A 224 CD CE NZ REMARK 480 LYS A 238 CE NZ REMARK 480 GLU A 254 CG CD OE1 OE2 REMARK 480 PHE A 270 CG CD1 CD2 CE1 CE2 CZ REMARK 480 ARG A 297 CD NE CZ NH1 NH2 REMARK 480 LYS A 401 CG CD CE NZ REMARK 480 MET B 10 CE REMARK 480 LYS B 13 CD CE NZ REMARK 480 GLU B 19 CD OE1 OE2 REMARK 480 LYS B 44 CD CE NZ REMARK 480 ILE B 107 CD1 REMARK 480 LYS B 117 NZ REMARK 480 LYS B 135 NZ REMARK 480 LYS B 141 CE NZ REMARK 480 LYS B 186 CE NZ REMARK 480 LYS B 209 NZ REMARK 480 LYS B 224 CG CD CE NZ REMARK 480 HIS B 287 CG ND1 CD2 CE1 NE2 REMARK 480 GLU B 330 CG CD OE1 OE2 REMARK 480 LYS B 337 CD CE NZ REMARK 480 ILE B 356 CD1 REMARK 480 THR B 382 OG1 CG2 REMARK 480 LYS B 389 NZ REMARK 480 LYS B 397 CE NZ REMARK 480 LYS B 401 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 27 65.76 29.28 REMARK 500 ASN A 133 52.21 -113.72 REMARK 500 ILE A 354 -54.61 -120.76 REMARK 500 ASN B 27 69.74 28.13 REMARK 500 ASN B 133 54.83 -106.29 REMARK 500 VAL B 229 -67.08 -122.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 346 NE2 REMARK 620 2 HEM A 501 NA 83.0 REMARK 620 3 HEM A 501 NB 92.7 91.2 REMARK 620 4 HEM A 501 NC 93.4 175.4 86.0 REMARK 620 5 HEM A 501 ND 86.1 92.0 176.4 90.6 REMARK 620 6 OY4 A 502 O11 153.0 78.1 106.7 106.3 75.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 346 NE2 REMARK 620 2 HEM B 501 NA 82.6 REMARK 620 3 HEM B 501 NB 92.2 92.4 REMARK 620 4 HEM B 501 NC 93.0 175.6 87.9 REMARK 620 5 HEM B 501 ND 85.3 88.0 177.5 91.5 REMARK 620 6 OY4 B 502 O11 150.9 77.3 109.3 106.7 73.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OY4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OY4 B 502 DBREF 6PU7 A 11 402 UNP P14902 I23O1_HUMAN 11 402 DBREF 6PU7 B 11 402 UNP P14902 I23O1_HUMAN 11 402 SEQADV 6PU7 MET A 10 UNP P14902 INITIATING METHIONINE SEQADV 6PU7 MET B 10 UNP P14902 INITIATING METHIONINE SEQRES 1 A 393 MET ILE SER LYS GLU TYR HIS ILE ASP GLU GLU VAL GLY SEQRES 2 A 393 PHE ALA LEU PRO ASN PRO GLN GLU ASN LEU PRO ASP PHE SEQRES 3 A 393 TYR ASN ASP TRP MET PHE ILE ALA LYS HIS LEU PRO ASP SEQRES 4 A 393 LEU ILE GLU SER GLY GLN LEU ARG GLU ARG VAL GLU LYS SEQRES 5 A 393 LEU ASN MET LEU SER ILE ASP HIS LEU THR ASP HIS LYS SEQRES 6 A 393 SER GLN ARG LEU ALA ARG LEU VAL LEU GLY CYS ILE THR SEQRES 7 A 393 MET ALA TYR VAL TRP GLY LYS GLY HIS GLY ASP VAL ARG SEQRES 8 A 393 LYS VAL LEU PRO ARG ASN ILE ALA VAL PRO TYR CYS GLN SEQRES 9 A 393 LEU SER LYS LYS LEU GLU LEU PRO PRO ILE LEU VAL TYR SEQRES 10 A 393 ALA ASP CYS VAL LEU ALA ASN TRP LYS LYS LYS ASP PRO SEQRES 11 A 393 ASN LYS PRO LEU THR TYR GLU ASN MET ASP VAL LEU PHE SEQRES 12 A 393 SER PHE ARG ASP GLY ASP CYS SER LYS GLY PHE PHE LEU SEQRES 13 A 393 VAL SER LEU LEU VAL GLU ILE ALA ALA ALA SER ALA ILE SEQRES 14 A 393 LYS VAL ILE PRO THR VAL PHE LYS ALA MET GLN MET GLN SEQRES 15 A 393 GLU ARG ASP THR LEU LEU LYS ALA LEU LEU GLU ILE ALA SEQRES 16 A 393 SER CYS LEU GLU LYS ALA LEU GLN VAL PHE HIS GLN ILE SEQRES 17 A 393 HIS ASP HIS VAL ASN PRO LYS ALA PHE PHE SER VAL LEU SEQRES 18 A 393 ARG ILE TYR LEU SER GLY TRP LYS GLY ASN PRO GLN LEU SEQRES 19 A 393 SER ASP GLY LEU VAL TYR GLU GLY PHE TRP GLU ASP PRO SEQRES 20 A 393 LYS GLU PHE ALA GLY GLY SER ALA GLY GLN SER SER VAL SEQRES 21 A 393 PHE GLN CYS PHE ASP VAL LEU LEU GLY ILE GLN GLN THR SEQRES 22 A 393 ALA GLY GLY GLY HIS ALA ALA GLN PHE LEU GLN ASP MET SEQRES 23 A 393 ARG ARG TYR MET PRO PRO ALA HIS ARG ASN PHE LEU CYS SEQRES 24 A 393 SER LEU GLU SER ASN PRO SER VAL ARG GLU PHE VAL LEU SEQRES 25 A 393 SER LYS GLY ASP ALA GLY LEU ARG GLU ALA TYR ASP ALA SEQRES 26 A 393 CYS VAL LYS ALA LEU VAL SER LEU ARG SER TYR HIS LEU SEQRES 27 A 393 GLN ILE VAL THR LYS TYR ILE LEU ILE PRO ALA SER GLN SEQRES 28 A 393 GLN PRO LYS GLU ASN LYS THR SER GLU ASP PRO SER LYS SEQRES 29 A 393 LEU GLU ALA LYS GLY THR GLY GLY THR ASP LEU MET ASN SEQRES 30 A 393 PHE LEU LYS THR VAL ARG SER THR THR GLU LYS SER LEU SEQRES 31 A 393 LEU LYS GLU SEQRES 1 B 393 MET ILE SER LYS GLU TYR HIS ILE ASP GLU GLU VAL GLY SEQRES 2 B 393 PHE ALA LEU PRO ASN PRO GLN GLU ASN LEU PRO ASP PHE SEQRES 3 B 393 TYR ASN ASP TRP MET PHE ILE ALA LYS HIS LEU PRO ASP SEQRES 4 B 393 LEU ILE GLU SER GLY GLN LEU ARG GLU ARG VAL GLU LYS SEQRES 5 B 393 LEU ASN MET LEU SER ILE ASP HIS LEU THR ASP HIS LYS SEQRES 6 B 393 SER GLN ARG LEU ALA ARG LEU VAL LEU GLY CYS ILE THR SEQRES 7 B 393 MET ALA TYR VAL TRP GLY LYS GLY HIS GLY ASP VAL ARG SEQRES 8 B 393 LYS VAL LEU PRO ARG ASN ILE ALA VAL PRO TYR CYS GLN SEQRES 9 B 393 LEU SER LYS LYS LEU GLU LEU PRO PRO ILE LEU VAL TYR SEQRES 10 B 393 ALA ASP CYS VAL LEU ALA ASN TRP LYS LYS LYS ASP PRO SEQRES 11 B 393 ASN LYS PRO LEU THR TYR GLU ASN MET ASP VAL LEU PHE SEQRES 12 B 393 SER PHE ARG ASP GLY ASP CYS SER LYS GLY PHE PHE LEU SEQRES 13 B 393 VAL SER LEU LEU VAL GLU ILE ALA ALA ALA SER ALA ILE SEQRES 14 B 393 LYS VAL ILE PRO THR VAL PHE LYS ALA MET GLN MET GLN SEQRES 15 B 393 GLU ARG ASP THR LEU LEU LYS ALA LEU LEU GLU ILE ALA SEQRES 16 B 393 SER CYS LEU GLU LYS ALA LEU GLN VAL PHE HIS GLN ILE SEQRES 17 B 393 HIS ASP HIS VAL ASN PRO LYS ALA PHE PHE SER VAL LEU SEQRES 18 B 393 ARG ILE TYR LEU SER GLY TRP LYS GLY ASN PRO GLN LEU SEQRES 19 B 393 SER ASP GLY LEU VAL TYR GLU GLY PHE TRP GLU ASP PRO SEQRES 20 B 393 LYS GLU PHE ALA GLY GLY SER ALA GLY GLN SER SER VAL SEQRES 21 B 393 PHE GLN CYS PHE ASP VAL LEU LEU GLY ILE GLN GLN THR SEQRES 22 B 393 ALA GLY GLY GLY HIS ALA ALA GLN PHE LEU GLN ASP MET SEQRES 23 B 393 ARG ARG TYR MET PRO PRO ALA HIS ARG ASN PHE LEU CYS SEQRES 24 B 393 SER LEU GLU SER ASN PRO SER VAL ARG GLU PHE VAL LEU SEQRES 25 B 393 SER LYS GLY ASP ALA GLY LEU ARG GLU ALA TYR ASP ALA SEQRES 26 B 393 CYS VAL LYS ALA LEU VAL SER LEU ARG SER TYR HIS LEU SEQRES 27 B 393 GLN ILE VAL THR LYS TYR ILE LEU ILE PRO ALA SER GLN SEQRES 28 B 393 GLN PRO LYS GLU ASN LYS THR SER GLU ASP PRO SER LYS SEQRES 29 B 393 LEU GLU ALA LYS GLY THR GLY GLY THR ASP LEU MET ASN SEQRES 30 B 393 PHE LEU LYS THR VAL ARG SER THR THR GLU LYS SER LEU SEQRES 31 B 393 LEU LYS GLU HET HEM A 501 43 HET OY4 A 502 25 HET HEM B 501 43 HET OY4 B 502 25 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM OY4 N-{2-[(4-{N-[(7S)-4-FLUOROBICYCLO[4.2.0]OCTA-1,3,5- HETNAM 2 OY4 TRIEN-7-YL]-N'-HYDROXYCARBAMIMIDOYL}-1,2,5-OXADIAZOL- HETNAM 3 OY4 3-YL)SULFANYL]ETHYL}ACETAMIDE HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 OY4 2(C15 H16 F N5 O3 S) FORMUL 7 HOH *215(H2 O) HELIX 1 AA1 SER A 12 HIS A 16 5 5 HELIX 2 AA2 PRO A 33 PHE A 35 5 3 HELIX 3 AA3 TYR A 36 HIS A 45 1 10 HELIX 4 AA4 HIS A 45 SER A 52 1 8 HELIX 5 AA5 GLN A 54 LYS A 61 1 8 HELIX 6 AA6 ASP A 72 GLY A 93 1 22 HELIX 7 AA7 PRO A 104 GLU A 119 1 16 HELIX 8 AA8 VAL A 125 VAL A 130 1 6 HELIX 9 AA9 THR A 144 GLU A 146 5 3 HELIX 10 AB1 CYS A 159 LYS A 179 1 21 HELIX 11 AB2 VAL A 180 MET A 190 1 11 HELIX 12 AB3 GLU A 192 HIS A 215 1 24 HELIX 13 AB4 GLN A 216 VAL A 221 1 6 HELIX 14 AB5 ASN A 222 VAL A 229 1 8 HELIX 15 AB6 VAL A 229 LEU A 234 1 6 HELIX 16 AB7 ASN A 240 SER A 244 5 5 HELIX 17 AB8 SER A 263 SER A 267 5 5 HELIX 18 AB9 SER A 268 GLY A 278 1 11 HELIX 19 AC1 GLY A 286 MET A 295 1 10 HELIX 20 AC2 ARG A 296 MET A 299 5 4 HELIX 21 AC3 PRO A 300 ASN A 313 1 14 HELIX 22 AC4 SER A 315 SER A 322 1 8 HELIX 23 AC5 ASP A 325 ILE A 354 1 30 HELIX 24 AC6 ILE A 354 GLN A 361 1 8 HELIX 25 AC7 GLY A 380 LYS A 397 1 18 HELIX 26 AC8 SER B 12 HIS B 16 5 5 HELIX 27 AC9 PRO B 33 PHE B 35 5 3 HELIX 28 AD1 TYR B 36 HIS B 45 1 10 HELIX 29 AD2 HIS B 45 SER B 52 1 8 HELIX 30 AD3 GLN B 54 LYS B 61 1 8 HELIX 31 AD4 SER B 66 LEU B 70 5 5 HELIX 32 AD5 ASP B 72 GLY B 93 1 22 HELIX 33 AD6 PRO B 104 LEU B 118 1 15 HELIX 34 AD7 VAL B 125 VAL B 130 1 6 HELIX 35 AD8 THR B 144 GLU B 146 5 3 HELIX 36 AD9 CYS B 159 LYS B 179 1 21 HELIX 37 AE1 VAL B 180 MET B 190 1 11 HELIX 38 AE2 GLU B 192 HIS B 215 1 24 HELIX 39 AE3 GLN B 216 VAL B 221 1 6 HELIX 40 AE4 ASN B 222 VAL B 229 1 8 HELIX 41 AE5 VAL B 229 SER B 235 1 7 HELIX 42 AE6 ASN B 240 SER B 244 5 5 HELIX 43 AE7 SER B 263 GLN B 266 5 4 HELIX 44 AE8 SER B 267 LEU B 277 1 11 HELIX 45 AE9 GLY B 286 ARG B 296 1 11 HELIX 46 AF1 ARG B 297 MET B 299 5 3 HELIX 47 AF2 PRO B 300 ASN B 313 1 14 HELIX 48 AF3 SER B 315 SER B 322 1 8 HELIX 49 AF4 ASP B 325 ILE B 354 1 30 HELIX 50 AF5 ILE B 354 GLN B 361 1 8 HELIX 51 AF6 THR B 382 LYS B 397 1 16 SHEET 1 AA1 2 VAL A 102 LEU A 103 0 SHEET 2 AA1 2 VAL A 248 TYR A 249 1 O VAL A 248 N LEU A 103 SHEET 1 AA2 2 LYS A 135 LYS A 136 0 SHEET 2 AA2 2 MET A 148 ASP A 149 -1 O ASP A 149 N LYS A 135 SHEET 1 AA3 2 VAL B 102 LEU B 103 0 SHEET 2 AA3 2 VAL B 248 TYR B 249 1 O VAL B 248 N LEU B 103 SHEET 1 AA4 2 LYS B 135 LYS B 136 0 SHEET 2 AA4 2 MET B 148 ASP B 149 -1 O ASP B 149 N LYS B 135 SSBOND 1 CYS A 308 CYS B 308 1555 1555 2.04 LINK NE2 HIS A 346 FE HEM A 501 1555 1555 2.23 LINK NE2 HIS B 346 FE HEM B 501 1555 1555 2.21 LINK FE HEM A 501 O11 OY4 A 502 1555 1555 2.41 LINK FE HEM B 501 O11 OY4 B 502 1555 1555 2.42 SITE 1 AC1 18 TYR A 126 PHE A 163 SER A 167 PHE A 214 SITE 2 AC1 18 PHE A 226 ALA A 264 GLY A 265 PHE A 291 SITE 3 AC1 18 ARG A 343 HIS A 346 ILE A 349 VAL A 350 SITE 4 AC1 18 ILE A 354 LEU A 384 VAL A 391 OY4 A 502 SITE 5 AC1 18 HOH A 636 HOH A 638 SITE 1 AC2 11 VAL A 130 PHE A 163 SER A 167 PHE A 226 SITE 2 AC2 11 ARG A 231 LEU A 234 GLY A 262 SER A 263 SITE 3 AC2 11 ALA A 264 GLY A 265 HEM A 501 SITE 1 AC3 23 PHE B 163 SER B 167 VAL B 170 PHE B 214 SITE 2 AC3 23 PHE B 226 SER B 263 ALA B 264 GLY B 265 SITE 3 AC3 23 PHE B 270 PHE B 291 ARG B 343 HIS B 346 SITE 4 AC3 23 ILE B 349 VAL B 350 TYR B 353 ILE B 354 SITE 5 AC3 23 LEU B 384 LEU B 388 VAL B 391 OY4 B 502 SITE 6 AC3 23 HOH B 642 HOH B 677 HOH B 694 SITE 1 AC4 12 TYR B 126 VAL B 130 PHE B 163 SER B 167 SITE 2 AC4 12 PHE B 226 ARG B 231 LEU B 234 GLY B 262 SITE 3 AC4 12 SER B 263 ALA B 264 GLY B 265 HEM B 501 CRYST1 86.427 96.516 127.725 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011570 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010361 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007829 0.00000