HEADER RNA BINDING PROTEIN/RNA 18-JUL-19 6PUN TITLE CRYSTAL STRUCTURE OF A TERNARY COMPLEX OF FBF-2 WITH LST-1 (SITE B) TITLE 2 AND COMPACT FBE RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: FEM-3 MRNA-BINDING FACTOR 2; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: UNP RESIDUES 164-575; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RNA (5'-R(*CP*UP*GP*UP*GP*AP*AP*U)-3'); COMPND 8 CHAIN: B, D; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: LST-1; COMPND 12 CHAIN: E, F; COMPND 13 FRAGMENT: UNP RESIDUES 64-88; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_TAXID: 6239; SOURCE 4 GENE: FBF-2, F21H12.5; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPULS(DE3)-RIL; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 11 ORGANISM_TAXID: 6239; SOURCE 12 MOL_ID: 3; SOURCE 13 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 14 ORGANISM_TAXID: 6239; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PUF, PROTEIN-RNA COMPLEX, RNA BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.QIU,Z.T.CAMPBELL,T.M.T.HALL REVDAT 2 11-OCT-23 6PUN 1 LINK REVDAT 1 21-AUG-19 6PUN 0 JRNL AUTH C.QIU,V.D.BHAT,S.RAJEEV,C.ZHANG,A.E.LASLEY,R.N.WINE, JRNL AUTH 2 Z.T.CAMPBELL,T.M.T.TANAKA HALL JRNL TITL A CRYSTAL STRUCTURE OF A COLLABORATIVE RNA REGULATORY JRNL TITL 2 COMPLEX REVEALS MECHANISMS TO REFINE TARGET SPECIFICITY. JRNL REF ELIFE V. 8 2019 JRNL REFN ESSN 2050-084X JRNL PMID 31397673 JRNL DOI 10.7554/ELIFE.48968 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 50104 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.990 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.6910 - 5.0563 0.99 3519 146 0.1796 0.2116 REMARK 3 2 5.0563 - 4.0143 0.89 3190 133 0.1638 0.2390 REMARK 3 3 4.0143 - 3.5071 0.99 3504 145 0.1769 0.2194 REMARK 3 4 3.5071 - 3.1866 0.99 3535 147 0.2050 0.2420 REMARK 3 5 3.1866 - 2.9582 0.99 3543 148 0.2147 0.2500 REMARK 3 6 2.9582 - 2.7839 0.99 3522 146 0.2161 0.2119 REMARK 3 7 2.7839 - 2.6445 0.99 3496 146 0.2184 0.2688 REMARK 3 8 2.6445 - 2.5294 0.91 3246 135 0.2237 0.2718 REMARK 3 9 2.5294 - 2.4320 0.91 3250 134 0.2301 0.2438 REMARK 3 10 2.4320 - 2.3481 0.98 3457 145 0.2251 0.2698 REMARK 3 11 2.3481 - 2.2747 0.98 3512 146 0.2336 0.2543 REMARK 3 12 2.2747 - 2.2096 0.98 3480 144 0.2508 0.2968 REMARK 3 13 2.2096 - 2.1515 0.99 3461 144 0.2733 0.3569 REMARK 3 14 2.1515 - 2.0990 0.94 3389 141 0.2966 0.3325 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 167 THROUGH 568) REMARK 3 ORIGIN FOR THE GROUP (A): -21.6104 -18.8288 30.6786 REMARK 3 T TENSOR REMARK 3 T11: 0.2857 T22: 0.3332 REMARK 3 T33: 0.3419 T12: 0.0282 REMARK 3 T13: 0.0243 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.3975 L22: 0.8102 REMARK 3 L33: 1.9832 L12: 0.3734 REMARK 3 L13: 0.3156 L23: 0.9548 REMARK 3 S TENSOR REMARK 3 S11: -0.0269 S12: -0.0019 S13: -0.0027 REMARK 3 S21: 0.0256 S22: 0.0640 S23: -0.0108 REMARK 3 S31: 0.0206 S32: 0.2084 S33: -0.0465 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 1 THROUGH 8) REMARK 3 ORIGIN FOR THE GROUP (A): -31.7057 -18.3940 37.9916 REMARK 3 T TENSOR REMARK 3 T11: 0.5413 T22: 0.5574 REMARK 3 T33: 0.4034 T12: -0.0661 REMARK 3 T13: 0.0805 T23: -0.0857 REMARK 3 L TENSOR REMARK 3 L11: 0.1098 L22: 1.1805 REMARK 3 L33: 2.1149 L12: -0.0178 REMARK 3 L13: 0.0595 L23: 1.5558 REMARK 3 S TENSOR REMARK 3 S11: 0.0081 S12: -0.0708 S13: 0.0850 REMARK 3 S21: 0.3205 S22: -0.2327 S23: 0.3477 REMARK 3 S31: 0.4884 S32: -0.3750 S33: 0.2048 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 167 THROUGH 564) REMARK 3 ORIGIN FOR THE GROUP (A): -33.1862 7.9871 12.4524 REMARK 3 T TENSOR REMARK 3 T11: 0.2805 T22: 0.3375 REMARK 3 T33: 0.3488 T12: -0.0298 REMARK 3 T13: -0.0410 T23: 0.0166 REMARK 3 L TENSOR REMARK 3 L11: 0.6592 L22: 0.9978 REMARK 3 L33: 1.8456 L12: 0.1734 REMARK 3 L13: -0.1882 L23: 0.5067 REMARK 3 S TENSOR REMARK 3 S11: -0.0268 S12: -0.0442 S13: 0.1111 REMARK 3 S21: 0.0261 S22: -0.0235 S23: 0.0688 REMARK 3 S31: -0.1238 S32: 0.0669 S33: 0.0550 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 2 THROUGH 8) REMARK 3 ORIGIN FOR THE GROUP (A): -24.1663 13.8081 15.0217 REMARK 3 T TENSOR REMARK 3 T11: 0.5492 T22: 0.5444 REMARK 3 T33: 0.3666 T12: -0.1749 REMARK 3 T13: 0.0054 T23: -0.0573 REMARK 3 L TENSOR REMARK 3 L11: 0.3883 L22: 1.0570 REMARK 3 L33: 2.2237 L12: -0.0121 REMARK 3 L13: 0.2813 L23: 1.0498 REMARK 3 S TENSOR REMARK 3 S11: 0.0864 S12: -0.2867 S13: 0.2660 REMARK 3 S21: 0.0278 S22: -0.0217 S23: -0.1815 REMARK 3 S31: -0.3944 S32: 0.2692 S33: 0.0088 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN 'E' AND RESID 76 THROUGH 80) REMARK 3 ORIGIN FOR THE GROUP (A): -23.3897 8.1307 51.0508 REMARK 3 T TENSOR REMARK 3 T11: 0.7221 T22: 0.6416 REMARK 3 T33: 0.6738 T12: -0.1480 REMARK 3 T13: -0.0725 T23: -0.0682 REMARK 3 L TENSOR REMARK 3 L11: 1.4332 L22: 1.9850 REMARK 3 L33: 1.8019 L12: 0.4470 REMARK 3 L13: -0.1351 L23: -0.2005 REMARK 3 S TENSOR REMARK 3 S11: -0.0402 S12: 0.1739 S13: 0.2282 REMARK 3 S21: 0.1164 S22: 0.0305 S23: -0.3421 REMARK 3 S31: -0.6775 S32: 0.4157 S33: 0.0289 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN 'F' AND RESID 75 THROUGH 80) REMARK 3 ORIGIN FOR THE GROUP (A): -28.7567 16.7006 44.9447 REMARK 3 T TENSOR REMARK 3 T11: 0.6882 T22: 0.7237 REMARK 3 T33: 0.7821 T12: 0.0059 REMARK 3 T13: -0.0144 T23: -0.1041 REMARK 3 L TENSOR REMARK 3 L11: 1.8398 L22: 3.6566 REMARK 3 L33: 3.0039 L12: 0.4936 REMARK 3 L13: 0.3323 L23: -0.4986 REMARK 3 S TENSOR REMARK 3 S11: -0.1558 S12: -0.1639 S13: -0.0300 REMARK 3 S21: 0.4517 S22: 0.0455 S23: -0.5005 REMARK 3 S31: 0.1432 S32: -0.1985 S33: 0.1323 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6PUN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1000243105. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50128 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.099 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.74900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3V74 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17-20% W/V PEG3350, 0.2 M MAGNESIUM REMARK 280 CHLORIDE, 0.1 M MES, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 163 REMARK 465 SER A 164 REMARK 465 ASN A 165 REMARK 465 ASN A 166 REMARK 465 ASP A 376 REMARK 465 SER A 377 REMARK 465 MET A 378 REMARK 465 ASN A 379 REMARK 465 VAL A 380 REMARK 465 ASP A 381 REMARK 465 HIS A 569 REMARK 465 PRO A 570 REMARK 465 ILE A 571 REMARK 465 TYR A 572 REMARK 465 GLU A 573 REMARK 465 LEU A 574 REMARK 465 GLN A 575 REMARK 465 GLY C 163 REMARK 465 SER C 164 REMARK 465 ASN C 165 REMARK 465 ASN C 166 REMARK 465 ASP C 376 REMARK 465 SER C 377 REMARK 465 MET C 378 REMARK 465 ASN C 379 REMARK 465 VAL C 380 REMARK 465 ASP C 381 REMARK 465 GLY C 524 REMARK 465 TYR C 525 REMARK 465 ASP C 526 REMARK 465 HIS C 527 REMARK 465 LEU C 565 REMARK 465 ARG C 566 REMARK 465 SER C 567 REMARK 465 THR C 568 REMARK 465 HIS C 569 REMARK 465 PRO C 570 REMARK 465 ILE C 571 REMARK 465 TYR C 572 REMARK 465 GLU C 573 REMARK 465 LEU C 574 REMARK 465 GLN C 575 REMARK 465 C D 1 REMARK 465 GLY E 70 REMARK 465 SER E 71 REMARK 465 ASN E 72 REMARK 465 SER E 73 REMARK 465 SER E 74 REMARK 465 GLY E 75 REMARK 465 ARG E 91 REMARK 465 VAL E 92 REMARK 465 ARG E 93 REMARK 465 ALA E 94 REMARK 465 MET E 95 REMARK 465 ILE E 96 REMARK 465 PRO E 97 REMARK 465 GLN E 98 REMARK 465 GLY F 70 REMARK 465 SER F 71 REMARK 465 ASN F 72 REMARK 465 SER F 73 REMARK 465 SER F 74 REMARK 465 ARG F 91 REMARK 465 VAL F 92 REMARK 465 ARG F 93 REMARK 465 ALA F 94 REMARK 465 MET F 95 REMARK 465 ILE F 96 REMARK 465 PRO F 97 REMARK 465 GLN F 98 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 182 84.16 53.42 REMARK 500 ASP A 312 -153.47 -97.47 REMARK 500 ASP A 488 -164.52 -103.31 REMARK 500 ASP C 312 -155.59 -82.81 REMARK 500 ARG C 441 -3.86 69.41 REMARK 500 ASN E 89 47.57 -95.30 REMARK 500 ASN F 89 -15.78 -148.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 300 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 707 O REMARK 620 2 HOH B 402 O 63.3 REMARK 620 3 HOH C 751 O 91.0 61.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 601 DBREF 6PUN A 164 575 UNP Q09312 FBF2_CAEEL 164 575 DBREF 6PUN B 1 8 PDB 6PUN 6PUN 1 8 DBREF 6PUN C 164 575 UNP Q09312 FBF2_CAEEL 164 575 DBREF 6PUN D 1 8 PDB 6PUN 6PUN 1 8 DBREF 6PUN E 74 98 UNP Q86RT0 Q86RT0_CAEEL 64 88 DBREF 6PUN F 74 98 UNP Q86RT0 Q86RT0_CAEEL 64 88 SEQADV 6PUN GLY A 163 UNP Q09312 EXPRESSION TAG SEQADV 6PUN GLY C 163 UNP Q09312 EXPRESSION TAG SEQADV 6PUN GLY E 70 UNP Q86RT0 EXPRESSION TAG SEQADV 6PUN SER E 71 UNP Q86RT0 EXPRESSION TAG SEQADV 6PUN ASN E 72 UNP Q86RT0 EXPRESSION TAG SEQADV 6PUN SER E 73 UNP Q86RT0 EXPRESSION TAG SEQADV 6PUN GLY F 70 UNP Q86RT0 EXPRESSION TAG SEQADV 6PUN SER F 71 UNP Q86RT0 EXPRESSION TAG SEQADV 6PUN ASN F 72 UNP Q86RT0 EXPRESSION TAG SEQADV 6PUN SER F 73 UNP Q86RT0 EXPRESSION TAG SEQRES 1 A 413 GLY SER ASN ASN VAL LEU PRO THR TRP SER LEU ASP SER SEQRES 2 A 413 ASN GLY GLU MET ARG SER ARG LEU SER LEU SER GLU VAL SEQRES 3 A 413 LEU ASP SER GLY ASP LEU MET LYS PHE ALA VAL ASP LYS SEQRES 4 A 413 THR GLY CYS GLN PHE LEU GLU LYS ALA VAL LYS GLY SER SEQRES 5 A 413 LEU THR SER TYR GLN LYS PHE GLN LEU PHE GLU GLN VAL SEQRES 6 A 413 ILE GLY ARG LYS ASP ASP PHE LEU LYS LEU SER THR ASN SEQRES 7 A 413 ILE PHE GLY ASN TYR LEU VAL GLN SER VAL ILE GLY ILE SEQRES 8 A 413 SER LEU ALA THR ASN ASP ASP GLY TYR THR LYS ARG GLN SEQRES 9 A 413 GLU LYS LEU LYS ASN PHE ILE SER SER GLN MET THR ASP SEQRES 10 A 413 MET CYS LEU ASP LYS PHE ALA CYS ARG VAL ILE GLN SER SEQRES 11 A 413 SER LEU GLN ASN MET ASP LEU SER LEU ALA CYS LYS LEU SEQRES 12 A 413 VAL GLN ALA LEU PRO ARG ASP ALA ARG LEU ILE ALA ILE SEQRES 13 A 413 CYS VAL ASP GLN ASN ALA ASN HIS VAL ILE GLN LYS VAL SEQRES 14 A 413 VAL ALA VAL ILE PRO LEU LYS ASN TRP GLU PHE ILE VAL SEQRES 15 A 413 ASP PHE VAL ALA THR PRO GLU HIS LEU ARG GLN ILE CYS SEQRES 16 A 413 SER ASP LYS TYR GLY CYS ARG VAL VAL GLN THR ILE ILE SEQRES 17 A 413 GLU LYS LEU THR ALA ASP SER MET ASN VAL ASP LEU THR SEQRES 18 A 413 SER ALA ALA GLN ASN LEU ARG GLU ARG ALA LEU GLN ARG SEQRES 19 A 413 LEU MET THR SER VAL THR ASN ARG CYS GLN GLU LEU ALA SEQRES 20 A 413 THR ASN GLU TYR ALA ASN TYR ILE ILE GLN HIS ILE VAL SEQRES 21 A 413 SER ASN ASP ASP LEU ALA VAL TYR ARG GLU CYS ILE ILE SEQRES 22 A 413 GLU LYS CYS LEU MET ARG ASN LEU LEU SER LEU SER GLN SEQRES 23 A 413 GLU LYS PHE ALA SER HIS VAL VAL GLU LYS ALA PHE LEU SEQRES 24 A 413 HIS ALA PRO LEU GLU LEU LEU ALA GLU MET MET ASP GLU SEQRES 25 A 413 ILE PHE ASP GLY TYR ILE PRO HIS PRO ASP THR GLY LYS SEQRES 26 A 413 ASP ALA LEU ASP ILE MET MET PHE HIS GLN PHE GLY ASN SEQRES 27 A 413 TYR VAL VAL GLN CYS MET LEU THR ILE CYS CYS ASP ALA SEQRES 28 A 413 VAL SER GLY ARG ARG GLN THR LYS GLU GLY GLY TYR ASP SEQRES 29 A 413 HIS ALA ILE SER PHE GLN ASP TRP LEU LYS LYS LEU HIS SEQRES 30 A 413 SER ARG VAL THR LYS GLU ARG HIS ARG LEU SER ARG PHE SEQRES 31 A 413 SER SER GLY LYS LYS MET ILE GLU THR LEU ALA ASN LEU SEQRES 32 A 413 ARG SER THR HIS PRO ILE TYR GLU LEU GLN SEQRES 1 B 8 C U G U G A A U SEQRES 1 C 413 GLY SER ASN ASN VAL LEU PRO THR TRP SER LEU ASP SER SEQRES 2 C 413 ASN GLY GLU MET ARG SER ARG LEU SER LEU SER GLU VAL SEQRES 3 C 413 LEU ASP SER GLY ASP LEU MET LYS PHE ALA VAL ASP LYS SEQRES 4 C 413 THR GLY CYS GLN PHE LEU GLU LYS ALA VAL LYS GLY SER SEQRES 5 C 413 LEU THR SER TYR GLN LYS PHE GLN LEU PHE GLU GLN VAL SEQRES 6 C 413 ILE GLY ARG LYS ASP ASP PHE LEU LYS LEU SER THR ASN SEQRES 7 C 413 ILE PHE GLY ASN TYR LEU VAL GLN SER VAL ILE GLY ILE SEQRES 8 C 413 SER LEU ALA THR ASN ASP ASP GLY TYR THR LYS ARG GLN SEQRES 9 C 413 GLU LYS LEU LYS ASN PHE ILE SER SER GLN MET THR ASP SEQRES 10 C 413 MET CYS LEU ASP LYS PHE ALA CYS ARG VAL ILE GLN SER SEQRES 11 C 413 SER LEU GLN ASN MET ASP LEU SER LEU ALA CYS LYS LEU SEQRES 12 C 413 VAL GLN ALA LEU PRO ARG ASP ALA ARG LEU ILE ALA ILE SEQRES 13 C 413 CYS VAL ASP GLN ASN ALA ASN HIS VAL ILE GLN LYS VAL SEQRES 14 C 413 VAL ALA VAL ILE PRO LEU LYS ASN TRP GLU PHE ILE VAL SEQRES 15 C 413 ASP PHE VAL ALA THR PRO GLU HIS LEU ARG GLN ILE CYS SEQRES 16 C 413 SER ASP LYS TYR GLY CYS ARG VAL VAL GLN THR ILE ILE SEQRES 17 C 413 GLU LYS LEU THR ALA ASP SER MET ASN VAL ASP LEU THR SEQRES 18 C 413 SER ALA ALA GLN ASN LEU ARG GLU ARG ALA LEU GLN ARG SEQRES 19 C 413 LEU MET THR SER VAL THR ASN ARG CYS GLN GLU LEU ALA SEQRES 20 C 413 THR ASN GLU TYR ALA ASN TYR ILE ILE GLN HIS ILE VAL SEQRES 21 C 413 SER ASN ASP ASP LEU ALA VAL TYR ARG GLU CYS ILE ILE SEQRES 22 C 413 GLU LYS CYS LEU MET ARG ASN LEU LEU SER LEU SER GLN SEQRES 23 C 413 GLU LYS PHE ALA SER HIS VAL VAL GLU LYS ALA PHE LEU SEQRES 24 C 413 HIS ALA PRO LEU GLU LEU LEU ALA GLU MET MET ASP GLU SEQRES 25 C 413 ILE PHE ASP GLY TYR ILE PRO HIS PRO ASP THR GLY LYS SEQRES 26 C 413 ASP ALA LEU ASP ILE MET MET PHE HIS GLN PHE GLY ASN SEQRES 27 C 413 TYR VAL VAL GLN CYS MET LEU THR ILE CYS CYS ASP ALA SEQRES 28 C 413 VAL SER GLY ARG ARG GLN THR LYS GLU GLY GLY TYR ASP SEQRES 29 C 413 HIS ALA ILE SER PHE GLN ASP TRP LEU LYS LYS LEU HIS SEQRES 30 C 413 SER ARG VAL THR LYS GLU ARG HIS ARG LEU SER ARG PHE SEQRES 31 C 413 SER SER GLY LYS LYS MET ILE GLU THR LEU ALA ASN LEU SEQRES 32 C 413 ARG SER THR HIS PRO ILE TYR GLU LEU GLN SEQRES 1 D 8 C U G U G A A U SEQRES 1 E 29 GLY SER ASN SER SER GLY LEU ARG SER GLN LYS LEU HIS SEQRES 2 E 29 LEU THR TYR ILE GLU LYS ASN LYS ARG VAL ARG ALA MET SEQRES 3 E 29 ILE PRO GLN SEQRES 1 F 29 GLY SER ASN SER SER GLY LEU ARG SER GLN LYS LEU HIS SEQRES 2 F 29 LEU THR TYR ILE GLU LYS ASN LYS ARG VAL ARG ALA MET SEQRES 3 F 29 ILE PRO GLN HET GOL A 601 6 HET EDO A 602 4 HET EDO A 603 4 HET EDO A 604 4 HET NA B 300 1 HET EDO C 601 4 HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 7 GOL C3 H8 O3 FORMUL 8 EDO 4(C2 H6 O2) FORMUL 11 NA NA 1+ FORMUL 13 HOH *166(H2 O) HELIX 1 AA1 PRO A 169 LEU A 173 5 5 HELIX 2 AA2 SER A 184 GLY A 192 1 9 HELIX 3 AA3 ASP A 193 VAL A 199 1 7 HELIX 4 AA4 ASP A 200 VAL A 211 1 12 HELIX 5 AA5 THR A 216 GLY A 229 1 14 HELIX 6 AA6 ARG A 230 THR A 239 1 10 HELIX 7 AA7 PHE A 242 THR A 257 1 16 HELIX 8 AA8 GLY A 261 GLN A 276 1 16 HELIX 9 AA9 GLN A 276 LEU A 282 1 7 HELIX 10 AB1 PHE A 285 MET A 297 1 13 HELIX 11 AB2 ASP A 298 ALA A 308 1 11 HELIX 12 AB3 ALA A 313 ASP A 321 1 9 HELIX 13 AB4 ALA A 324 ILE A 335 1 12 HELIX 14 AB5 PRO A 336 THR A 349 1 14 HELIX 15 AB6 THR A 349 SER A 358 1 10 HELIX 16 AB7 TYR A 361 ALA A 375 1 15 HELIX 17 AB8 THR A 383 ARG A 404 1 22 HELIX 18 AB9 ARG A 404 THR A 410 1 7 HELIX 19 AC1 ALA A 414 ASN A 424 1 11 HELIX 20 AC2 LEU A 427 CYS A 438 1 12 HELIX 21 AC3 ASN A 442 GLN A 448 1 7 HELIX 22 AC4 PHE A 451 ALA A 463 1 13 HELIX 23 AC5 PRO A 464 GLY A 478 1 15 HELIX 24 AC6 ASP A 488 PHE A 495 1 8 HELIX 25 AC7 PHE A 498 SER A 515 1 18 HELIX 26 AC8 HIS A 527 GLU A 545 1 19 HELIX 27 AC9 GLU A 545 SER A 550 1 6 HELIX 28 AD1 PHE A 552 THR A 568 1 17 HELIX 29 AD2 PRO C 169 LEU C 173 5 5 HELIX 30 AD3 SER C 184 GLY C 192 1 9 HELIX 31 AD4 ASP C 193 VAL C 199 1 7 HELIX 32 AD5 ASP C 200 VAL C 211 1 12 HELIX 33 AD6 THR C 216 GLY C 229 1 14 HELIX 34 AD7 ARG C 230 THR C 239 1 10 HELIX 35 AD8 PHE C 242 THR C 257 1 16 HELIX 36 AD9 GLY C 261 GLN C 276 1 16 HELIX 37 AE1 GLN C 276 ASP C 283 1 8 HELIX 38 AE2 PHE C 285 MET C 297 1 13 HELIX 39 AE3 ASP C 298 ALA C 308 1 11 HELIX 40 AE4 ARG C 314 ASP C 321 1 8 HELIX 41 AE5 ASN C 323 ILE C 335 1 13 HELIX 42 AE6 PRO C 336 THR C 349 1 14 HELIX 43 AE7 THR C 349 SER C 358 1 10 HELIX 44 AE8 TYR C 361 ALA C 375 1 15 HELIX 45 AE9 THR C 383 ARG C 404 1 22 HELIX 46 AF1 ARG C 404 THR C 410 1 7 HELIX 47 AF2 ALA C 414 ASN C 424 1 11 HELIX 48 AF3 LEU C 427 LEU C 439 1 13 HELIX 49 AF4 ASN C 442 GLN C 448 1 7 HELIX 50 AF5 PHE C 451 ALA C 463 1 13 HELIX 51 AF6 PRO C 464 GLY C 478 1 15 HELIX 52 AF7 ASP C 488 PHE C 495 1 8 HELIX 53 AF8 PHE C 498 SER C 515 1 18 HELIX 54 AF9 ILE C 529 GLU C 545 1 17 HELIX 55 AG1 GLU C 545 SER C 550 1 6 HELIX 56 AG2 PHE C 552 ALA C 563 1 12 SHEET 1 AA1 2 LYS A 521 GLU A 522 0 SHEET 2 AA1 2 TYR A 525 ASP A 526 -1 O TYR A 525 N GLU A 522 LINK O HOH A 707 NA NA B 300 1555 1555 2.94 LINK NA NA B 300 O HOH B 402 1555 1555 2.63 LINK NA NA B 300 O HOH C 751 1555 1556 2.43 SITE 1 AC1 3 THR A 239 ASN A 240 ILE A 241 SITE 1 AC2 4 ARG A 230 ASP A 233 LYS A 544 HOH A 749 SITE 1 AC3 4 SER A 274 ALA A 308 HOH A 722 HOH A 732 SITE 1 AC4 5 HOH A 707 G B 3 HOH B 402 GLU C 178 SITE 2 AC4 5 HOH C 751 SITE 1 AC5 4 GLU A 522 GLY A 523 HOH A 736 C B 1 CRYST1 42.751 74.380 81.547 107.17 104.40 101.76 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023391 0.004869 0.008359 0.00000 SCALE2 0.000000 0.013733 0.005379 0.00000 SCALE3 0.000000 0.000000 0.013597 0.00000