HEADER FLAVOPROTEIN 18-JUL-19 6PUP TITLE 1.9 A CRYSTAL STRUCTURE OF FLAVODOXIN-LIKE DOMAIN OF TITLE 2 SCHIZOSACCHAROMYCES JAPONICUS PUTATIVE TRNAPHE 4-DEMETHYLWYOSINE TITLE 3 SYNTHASE TYW1 IN COMPLEX WITH FMN COMPND MOL_ID: 1; COMPND 2 MOLECULE: WYBUTOSINE BIOSYNTHESIS PROTEIN TYW1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FLAVODOXIN-LIKE DOMAIN, RESIDUES 76-251; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES JAPONICUS (STRAIN YFS275 / SOURCE 3 FY16936); SOURCE 4 ORGANISM_COMMON: FISSION YEAST; SOURCE 5 ORGANISM_TAXID: 402676; SOURCE 6 STRAIN: YFS275 / FY16936; SOURCE 7 GENE: SJAG_04265; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRNA, HYPERMODIFICATION, WYOSINE, METAL BINDING, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.SJEKLOCA,A.R.FERRE D'AMARE REVDAT 2 22-JUN-22 6PUP 1 TITLE JRNL REVDAT 1 29-JUL-20 6PUP 0 JRNL AUTH L.SJEKLOCA,A.R.FERRE-D'AMARE JRNL TITL BIOCHEMICAL AND STRUCTURAL CHARACTERIZATION OF THE JRNL TITL 2 FLAVODOXIN-LIKE DOMAIN OF THE SCHIZOSACCHAROMYCES JAPONICUS JRNL TITL 3 PUTATIVE TRNAPHE 4-DEMETHYLWYOSINE SYNTHASE TYW1 IN COMPLEX JRNL TITL 4 WITH FMN. JRNL REF MICROPUBL BIOL V.2022 2022 JRNL PMID 35693892 JRNL DOI 10.17912/MICROPUB.BIOLOGY.000570 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 67.3 REMARK 3 NUMBER OF REFLECTIONS : 9600 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1081 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.89 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.94 REMARK 3 REFLECTION IN BIN (WORKING SET) : 99 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 9.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.3250 REMARK 3 BIN FREE R VALUE SET COUNT : 12 REMARK 3 BIN FREE R VALUE : 0.3590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1339 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 46 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.99000 REMARK 3 B22 (A**2) : -0.72000 REMARK 3 B33 (A**2) : 1.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.41000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.230 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.188 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.146 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1404 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1282 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1910 ; 1.551 ; 1.667 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2964 ; 1.358 ; 1.589 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 170 ; 6.428 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 73 ;32.885 ;23.151 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 230 ;14.858 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;17.022 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 184 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1568 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 303 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6PUP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1000243095. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10359 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 54.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 77.4 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.11500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 28.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.97800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CRANK2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: YELLOW TETRAGONAL CRYSTALS, 150 X 50 X 50 UM3 REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES-NAOH PH 7.5, 100 MM MOPS REMARK 280 PH 7.5, 9.37% V/V MPD, 9.37% PEG1000, 9.37% W/V PEG 3350, 300 MM REMARK 280 MGCL2 X 6 H20; 300 MM CACL2 X 2 H20, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 31.13400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.31600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 31.13400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.31600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 432 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 76 REMARK 465 SER A 77 REMARK 465 ARG A 78 REMARK 465 LYS A 79 REMARK 465 LEU A 80 REMARK 465 LYS A 250 REMARK 465 ALA A 251 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 MN MN A 302 O HOH A 401 0.75 REMARK 500 MN MN A 301 O HOH A 401 1.00 REMARK 500 OD2 ASP A 128 O HOH A 401 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 402 O HOH A 402 2657 1.94 REMARK 500 O HOH A 444 O HOH A 445 2556 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 118 45.07 -102.20 REMARK 500 LYS A 135 144.08 -171.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 128 OD2 REMARK 620 2 ASP A 130 OD1 74.7 REMARK 620 3 ASP A 130 OD2 95.3 50.9 REMARK 620 4 HOH A 405 O 65.9 98.8 148.9 REMARK 620 5 HOH A 440 O 132.0 69.5 86.2 89.0 REMARK 620 6 HOH A 444 O 134.4 148.0 122.8 86.1 79.1 REMARK 620 7 HOH A 445 O 124.6 112.8 133.4 58.7 50.2 44.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 128 OD2 REMARK 620 2 ASP A 130 OD1 80.9 REMARK 620 3 GLU A 131 OE2 82.3 99.1 REMARK 620 4 HOH A 405 O 70.1 147.6 63.5 REMARK 620 5 HOH A 439 O 145.5 127.6 74.9 76.6 REMARK 620 6 HOH A 440 O 142.8 91.8 134.9 120.1 64.1 REMARK 620 7 HOH A 445 O 116.1 143.6 114.3 66.0 54.6 54.6 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 303 DBREF 6PUP A 76 251 UNP B6K6D6 B6K6D6_SCHJY 76 251 SEQRES 1 A 176 SER SER ARG LYS LEU THR ASP ILE SER ALA CYS SER ILE SEQRES 2 A 176 ASN ILE PHE TYR SER THR LEU GLY GLY SER THR GLN LYS SEQRES 3 A 176 PHE ALA GLU HIS VAL ALA ASP ARG ILE ARG SER SER LEU SEQRES 4 A 176 GLN THR GLU LEU VAL GLU ILE LEU ASN LEU ASP TYR ILE SEQRES 5 A 176 ASP LEU ASP GLU TYR PHE SER LYS GLY ASN SER ASN THR SEQRES 6 A 176 VAL TYR LEU VAL LEU LEU PRO SER TYR ALA ILE GLU SER SEQRES 7 A 176 SER ILE ASP TYR PHE LEU SER ALA LEU GLN THR THR ILE SEQRES 8 A 176 ASP ASP PHE ARG ILE VAL ALA ARG PRO LEU GLU LYS LEU SEQRES 9 A 176 ARG GLY PHE ALA VAL LEU GLY PHE GLY ASP PHE GLU GLN SEQRES 10 A 176 TYR ALA GLY ASP LEU PHE CYS TYR GLN ALA ILE ALA ALA SEQRES 11 A 176 ASP GLN ARG LEU ALA LYS LEU GLY ALA GLN ARG ILE ALA SEQRES 12 A 176 PRO LEU GLY VAL VAL ASN VAL LYS LEU GLU LYS ALA GLN SEQRES 13 A 176 VAL TYR GLU ALA MET GLU ALA TRP THR ASP LEU PHE LEU SEQRES 14 A 176 GLN TYR ALA LYS GLU LYS ALA HET MN A 301 1 HET MN A 302 1 HET FMN A 303 31 HETNAM MN MANGANESE (II) ION HETNAM FMN FLAVIN MONONUCLEOTIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 MN 2(MN 2+) FORMUL 4 FMN C17 H21 N4 O9 P FORMUL 5 HOH *46(H2 O) HELIX 1 AA1 ASP A 82 CYS A 86 5 5 HELIX 2 AA2 GLY A 97 GLN A 115 1 19 HELIX 3 AA3 ASP A 125 ILE A 127 5 3 HELIX 4 AA4 ASP A 128 SER A 134 1 7 HELIX 5 AA5 SER A 153 ASP A 168 1 16 HELIX 6 AA6 ASP A 189 ALA A 194 1 6 HELIX 7 AA7 CYS A 199 LEU A 212 1 14 HELIX 8 AA8 GLU A 228 GLU A 249 1 22 SHEET 1 AA1 5 VAL A 119 ASN A 123 0 SHEET 2 AA1 5 SER A 87 TYR A 92 1 N ILE A 90 O GLU A 120 SHEET 3 AA1 5 THR A 140 PRO A 147 1 O LEU A 145 N PHE A 91 SHEET 4 AA1 5 GLY A 181 GLY A 188 1 O LEU A 185 N VAL A 144 SHEET 5 AA1 5 GLY A 221 ASN A 224 1 O GLY A 221 N GLY A 186 LINK OD2 ASP A 128 MN MN A 301 1555 1555 2.30 LINK OD2 ASP A 128 MN MN A 302 1555 1555 2.59 LINK OD1 ASP A 130 MN MN A 301 1555 1555 2.77 LINK OD2 ASP A 130 MN MN A 301 1555 1555 2.23 LINK OD1 ASP A 130 MN MN A 302 1555 1555 2.15 LINK OE2 GLU A 131 MN MN A 302 1555 1555 2.50 LINK MN MN A 301 O HOH A 405 1555 1555 2.77 LINK MN MN A 301 O HOH A 440 1555 1555 2.54 LINK MN MN A 301 O HOH A 444 1555 2556 2.75 LINK MN MN A 301 O HOH A 445 1555 1555 2.77 LINK MN MN A 302 O HOH A 405 1555 1555 2.22 LINK MN MN A 302 O HOH A 439 1555 1555 2.47 LINK MN MN A 302 O HOH A 440 1555 1555 2.07 LINK MN MN A 302 O HOH A 445 1555 1555 2.71 SITE 1 AC1 8 ASP A 128 ASP A 130 MN A 302 HOH A 401 SITE 2 AC1 8 HOH A 405 HOH A 440 HOH A 444 HOH A 445 SITE 1 AC2 8 ASP A 128 ASP A 130 GLU A 131 MN A 301 SITE 2 AC2 8 HOH A 405 HOH A 439 HOH A 440 HOH A 445 SITE 1 AC3 22 THR A 94 LEU A 95 GLY A 96 GLY A 97 SITE 2 AC3 22 SER A 98 THR A 99 PRO A 147 SER A 148 SITE 3 AC3 22 TYR A 149 ALA A 150 GLY A 188 ASP A 189 SITE 4 AC3 22 TYR A 193 LEU A 197 PHE A 198 CYS A 199 SITE 5 AC3 22 TYR A 200 VAL A 225 HOH A 403 HOH A 408 SITE 6 AC3 22 HOH A 428 HOH A 435 CRYST1 62.268 58.632 62.520 90.00 118.71 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016060 0.000000 0.008797 0.00000 SCALE2 0.000000 0.017056 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018237 0.00000