data_6PUQ # _entry.id 6PUQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.359 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6PUQ pdb_00006puq 10.2210/pdb6puq/pdb WWPDB D_1000243106 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6PUQ _pdbx_database_status.recvd_initial_deposition_date 2019-07-18 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Sjekloca, L.' 1 0000-0002-4508-1743 ;Ferre-D'Amare, A.R. ; 2 0000-0003-4549-1619 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'MicroPubl Biol' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2578-9430 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 2022 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;Biochemical and structural characterization of the flavodoxin-like domain of the Schizosaccharomyces japonicus putative tRNAPhe 4-demethylwyosine synthase Tyw1 in complex with FMN. ; _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.17912/micropub.biology.000570 _citation.pdbx_database_id_PubMed 35693892 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sjekloca, L.' 1 ? primary ;Ferre-D'Amare, A.R. ; 2 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 91.860 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6PUQ _cell.details ? _cell.formula_units_Z ? _cell.length_a 28.298 _cell.length_a_esd ? _cell.length_b 73.087 _cell.length_b_esd ? _cell.length_c 42.518 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 2 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PUQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Wybutosine biosynthesis protein Tyw1' 24772.379 1 ? ? ? ? 2 non-polymer syn 'FLAVIN MONONUCLEOTIDE' 456.344 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 5 ? ? ? ? 4 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 1 ? ? ? ? 5 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 6 water nat water 18.015 64 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;KKLAKPEKIASATSLKGSTPKAPKVFRKTEKTKHSNRKIACEASTKSSRKLTDISACSINIFYSTLGGSTQKFAEHVADR IRSSLQTELVEILNLDYIDLDEYFSKGNSNTVYLVLLPSYAIESSIDYFLSALQTTIDDFRIVARPLEKLRGFAVLGFGD FEQYAGDLFCYQAIAADQRLAKLGAQRIAPLGVVNVKLEKAQVYEAMEAWTDLFLQYAKEKA ; _entity_poly.pdbx_seq_one_letter_code_can ;KKLAKPEKIASATSLKGSTPKAPKVFRKTEKTKHSNRKIACEASTKSSRKLTDISACSINIFYSTLGGSTQKFAEHVADR IRSSLQTELVEILNLDYIDLDEYFSKGNSNTVYLVLLPSYAIESSIDYFLSALQTTIDDFRIVARPLEKLRGFAVLGFGD FEQYAGDLFCYQAIAADQRLAKLGAQRIAPLGVVNVKLEKAQVYEAMEAWTDLFLQYAKEKA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 LYS n 1 3 LEU n 1 4 ALA n 1 5 LYS n 1 6 PRO n 1 7 GLU n 1 8 LYS n 1 9 ILE n 1 10 ALA n 1 11 SER n 1 12 ALA n 1 13 THR n 1 14 SER n 1 15 LEU n 1 16 LYS n 1 17 GLY n 1 18 SER n 1 19 THR n 1 20 PRO n 1 21 LYS n 1 22 ALA n 1 23 PRO n 1 24 LYS n 1 25 VAL n 1 26 PHE n 1 27 ARG n 1 28 LYS n 1 29 THR n 1 30 GLU n 1 31 LYS n 1 32 THR n 1 33 LYS n 1 34 HIS n 1 35 SER n 1 36 ASN n 1 37 ARG n 1 38 LYS n 1 39 ILE n 1 40 ALA n 1 41 CYS n 1 42 GLU n 1 43 ALA n 1 44 SER n 1 45 THR n 1 46 LYS n 1 47 SER n 1 48 SER n 1 49 ARG n 1 50 LYS n 1 51 LEU n 1 52 THR n 1 53 ASP n 1 54 ILE n 1 55 SER n 1 56 ALA n 1 57 CYS n 1 58 SER n 1 59 ILE n 1 60 ASN n 1 61 ILE n 1 62 PHE n 1 63 TYR n 1 64 SER n 1 65 THR n 1 66 LEU n 1 67 GLY n 1 68 GLY n 1 69 SER n 1 70 THR n 1 71 GLN n 1 72 LYS n 1 73 PHE n 1 74 ALA n 1 75 GLU n 1 76 HIS n 1 77 VAL n 1 78 ALA n 1 79 ASP n 1 80 ARG n 1 81 ILE n 1 82 ARG n 1 83 SER n 1 84 SER n 1 85 LEU n 1 86 GLN n 1 87 THR n 1 88 GLU n 1 89 LEU n 1 90 VAL n 1 91 GLU n 1 92 ILE n 1 93 LEU n 1 94 ASN n 1 95 LEU n 1 96 ASP n 1 97 TYR n 1 98 ILE n 1 99 ASP n 1 100 LEU n 1 101 ASP n 1 102 GLU n 1 103 TYR n 1 104 PHE n 1 105 SER n 1 106 LYS n 1 107 GLY n 1 108 ASN n 1 109 SER n 1 110 ASN n 1 111 THR n 1 112 VAL n 1 113 TYR n 1 114 LEU n 1 115 VAL n 1 116 LEU n 1 117 LEU n 1 118 PRO n 1 119 SER n 1 120 TYR n 1 121 ALA n 1 122 ILE n 1 123 GLU n 1 124 SER n 1 125 SER n 1 126 ILE n 1 127 ASP n 1 128 TYR n 1 129 PHE n 1 130 LEU n 1 131 SER n 1 132 ALA n 1 133 LEU n 1 134 GLN n 1 135 THR n 1 136 THR n 1 137 ILE n 1 138 ASP n 1 139 ASP n 1 140 PHE n 1 141 ARG n 1 142 ILE n 1 143 VAL n 1 144 ALA n 1 145 ARG n 1 146 PRO n 1 147 LEU n 1 148 GLU n 1 149 LYS n 1 150 LEU n 1 151 ARG n 1 152 GLY n 1 153 PHE n 1 154 ALA n 1 155 VAL n 1 156 LEU n 1 157 GLY n 1 158 PHE n 1 159 GLY n 1 160 ASP n 1 161 PHE n 1 162 GLU n 1 163 GLN n 1 164 TYR n 1 165 ALA n 1 166 GLY n 1 167 ASP n 1 168 LEU n 1 169 PHE n 1 170 CYS n 1 171 TYR n 1 172 GLN n 1 173 ALA n 1 174 ILE n 1 175 ALA n 1 176 ALA n 1 177 ASP n 1 178 GLN n 1 179 ARG n 1 180 LEU n 1 181 ALA n 1 182 LYS n 1 183 LEU n 1 184 GLY n 1 185 ALA n 1 186 GLN n 1 187 ARG n 1 188 ILE n 1 189 ALA n 1 190 PRO n 1 191 LEU n 1 192 GLY n 1 193 VAL n 1 194 VAL n 1 195 ASN n 1 196 VAL n 1 197 LYS n 1 198 LEU n 1 199 GLU n 1 200 LYS n 1 201 ALA n 1 202 GLN n 1 203 VAL n 1 204 TYR n 1 205 GLU n 1 206 ALA n 1 207 MET n 1 208 GLU n 1 209 ALA n 1 210 TRP n 1 211 THR n 1 212 ASP n 1 213 LEU n 1 214 PHE n 1 215 LEU n 1 216 GLN n 1 217 TYR n 1 218 ALA n 1 219 LYS n 1 220 GLU n 1 221 LYS n 1 222 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 222 _entity_src_gen.gene_src_common_name 'Fission yeast' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene SJAG_04265 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'yFS275 / FY16936' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Schizosaccharomyces japonicus (strain yFS275 / FY16936)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 402676 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code B6K6D6_SCHJY _struct_ref.pdbx_db_accession B6K6D6 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;KKLAKPEKIASATSLKGSTPKAPKVFRKTEKTKHSNRKIACEASTKSSRKLTDISACSINIFYSTLGGSTQKFAEHVADR IRSSLQTELVEILNLDYIDLDEYFSKGNSNTVYLVLLPSYAIESSIDYFLSALQTTIDDFRIVARPLEKLRGFAVLGFGD FEQYAGDLFCYQAIAADQRLAKLGAQRIAPLGVVNVKLEKAQVYEAMEAWTDLFLQYAKEKA ; _struct_ref.pdbx_align_begin 30 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6PUQ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 222 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession B6K6D6 _struct_ref_seq.db_align_beg 30 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 251 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 30 _struct_ref_seq.pdbx_auth_seq_align_end 251 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FMN non-polymer . 'FLAVIN MONONUCLEOTIDE' 'RIBOFLAVIN MONOPHOSPHATE' 'C17 H21 N4 O9 P' 456.344 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6PUQ _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.77 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 30.66 _exptl_crystal.description ;yellow pyramidal or tetragonal crystals 300 x 300 x 300 um3 ; _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 288 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '200 mM sodium acetate trihydrate, 30% PEG 4000, 100 mM Tris- HCl pH 8.5' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 S 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-11-30 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 5.0.2 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate 21.380 _reflns.entry_id 6PUQ _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.560 _reflns.d_resolution_low 73.090 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 41931 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 87.900 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.700 _reflns.pdbx_Rmerge_I_obs 0.075 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 11.200 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.082 _reflns.pdbx_Rpim_I_all 0.033 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.996 _reflns.pdbx_R_split ? _reflns.pdbx_CC_star ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split _reflns_shell.pdbx_CC_star 1.560 1.600 ? ? ? ? ? ? 743 41.500 ? ? ? ? 0.978 ? ? ? ? ? ? ? ? 3.400 ? ? ? ? 1.162 0.612 ? 1 1 0.612 ? ? 1.56 6.98 ? ? ? ? ? ? 291 99.800 ? ? ? ? 0.058 ? ? ? ? ? ? ? ? 6.200 ? ? ? ? 0.064 0.026 ? 2 1 0.993 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 70.250 _refine.B_iso_mean 29.2538 _refine.B_iso_min 11.570 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6PUQ _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.5600 _refine.ls_d_res_low 42.4960 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 41931 _refine.ls_number_reflns_R_free 3866 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 86.4800 _refine.ls_percent_reflns_R_free 9.2200 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1992 _refine.ls_R_factor_R_free 0.2271 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1963 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.340 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 29.9400 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2300 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 1.5600 _refine_hist.d_res_low 42.4960 _refine_hist.number_atoms_solvent 64 _refine_hist.number_atoms_total 1469 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 171 _refine_hist.pdbx_B_iso_mean_ligand 31.84 _refine_hist.pdbx_B_iso_mean_solvent 36.99 _refine_hist.pdbx_number_atoms_protein 1358 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 47 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.006 ? 1545 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.859 ? 2111 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.049 ? 236 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.004 ? 267 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 16.856 ? 936 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.5600 1.6158 . . 176 1775 40.0000 . . . 0.5354 0.0000 0.4552 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.6158 1.6805 . . 248 2468 56.0000 . . . 0.4269 0.0000 0.3843 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.6805 1.7569 . . 360 3343 77.0000 . . . 0.3718 0.0000 0.3560 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.7569 1.8496 . . 420 4157 94.0000 . . . 0.2988 0.0000 0.2866 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.8496 1.9655 . . 440 4350 99.0000 . . . 0.2956 0.0000 0.2402 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.9655 2.1172 . . 450 4407 99.0000 . . . 0.2412 0.0000 0.2032 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.1172 2.3303 . . 443 4364 100.0000 . . . 0.2276 0.0000 0.1874 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3303 2.6674 . . 437 4409 100.0000 . . . 0.1990 0.0000 0.1881 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.6674 3.3604 . . 454 4380 100.0000 . . . 0.2138 0.0000 0.1842 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.3604 42.4960 . . 438 4412 100.0000 . . . 0.1907 0.0000 0.1596 . . . . . . . . . . # _struct.entry_id 6PUQ _struct.title ;1.56 A crystal structure of flavodoxin-like domain of Schizosaccharomyces japonicus putative tRNAPhe 4-demethylwyosine synthase Tyw1 in complex with FMN ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6PUQ _struct_keywords.text 'tRNA, hypermodification, wyosine, FLAVOPROTEIN' _struct_keywords.pdbx_keywords FLAVOPROTEIN # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 4 ? I N N 5 ? J N N 6 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ARG A 49 ? ILE A 54 ? ARG A 78 ILE A 83 1 ? 6 HELX_P HELX_P2 AA2 GLY A 68 ? GLN A 86 ? GLY A 97 GLN A 115 1 ? 19 HELX_P HELX_P3 AA3 ASP A 99 ? SER A 105 ? ASP A 128 SER A 134 1 ? 7 HELX_P HELX_P4 AA4 SER A 124 ? ASP A 139 ? SER A 153 ASP A 168 1 ? 16 HELX_P HELX_P5 AA5 ASP A 160 ? ALA A 165 ? ASP A 189 ALA A 194 1 ? 6 HELX_P HELX_P6 AA6 CYS A 170 ? LEU A 183 ? CYS A 199 LEU A 212 1 ? 14 HELX_P HELX_P7 AA7 GLU A 199 ? LYS A 219 ? GLU A 228 LYS A 248 1 ? 21 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A SER 64 OG ? ? ? 1_555 G MG . MG ? ? A SER 93 A MG 306 1_555 ? ? ? ? ? ? ? 2.907 ? ? metalc2 metalc both ? A THR 65 N ? ? ? 1_555 G MG . MG ? ? A THR 94 A MG 306 1_555 ? ? ? ? ? ? ? 2.891 ? ? metalc3 metalc ? ? A SER 69 OG ? ? ? 1_555 C MG . MG ? ? A SER 98 A MG 302 1_555 ? ? ? ? ? ? ? 2.891 ? ? metalc4 metalc ? ? A THR 70 OG1 ? ? ? 1_555 C MG . MG ? ? A THR 99 A MG 302 1_555 ? ? ? ? ? ? ? 2.882 ? ? metalc5 metalc ? ? A ASN 94 OD1 ? ? ? 1_555 G MG . MG ? ? A ASN 123 A MG 306 1_555 ? ? ? ? ? ? ? 2.941 ? ? metalc6 metalc ? ? A ASP 96 OD2 ? ? ? 1_555 G MG . MG ? ? A ASP 125 A MG 306 1_555 ? ? ? ? ? ? ? 2.308 ? ? metalc7 metalc ? ? A LEU 117 O ? ? ? 1_555 D MG . MG ? ? A LEU 146 A MG 303 1_555 ? ? ? ? ? ? ? 2.763 ? ? metalc8 metalc ? ? A SER 119 OG ? ? ? 1_555 D MG . MG ? ? A SER 148 A MG 303 1_555 ? ? ? ? ? ? ? 2.756 ? ? metalc9 metalc ? ? A ILE 122 O ? ? ? 1_555 F MG . MG ? ? A ILE 151 A MG 305 1_555 ? ? ? ? ? ? ? 2.705 ? ? metalc10 metalc ? ? A SER 124 OG ? ? ? 1_555 F MG . MG ? ? A SER 153 A MG 305 1_555 ? ? ? ? ? ? ? 2.487 ? ? metalc11 metalc both ? A VAL 155 N ? ? ? 1_555 E MG . MG ? ? A VAL 184 A MG 304 1_555 ? ? ? ? ? ? ? 2.917 ? ? metalc12 metalc ? ? A PHE 158 O ? ? ? 1_555 D MG . MG ? ? A PHE 187 A MG 303 1_555 ? ? ? ? ? ? ? 2.855 ? ? metalc13 metalc one ? A GLN 172 NE2 ? ? ? 1_555 F MG . MG ? ? A GLN 201 A MG 305 1_555 ? ? ? ? ? ? ? 2.978 ? ? metalc14 metalc ? ? A ASP 177 OD1 ? ? ? 1_555 E MG . MG ? ? A ASP 206 A MG 304 1_555 ? ? ? ? ? ? ? 2.867 ? ? metalc15 metalc ? ? A ALA 189 O ? ? ? 1_555 E MG . MG ? ? A ALA 218 A MG 304 1_555 ? ? ? ? ? ? ? 2.823 ? ? metalc16 metalc ? ? B FMN . "O4'" ? ? ? 1_555 C MG . MG ? ? A FMN 301 A MG 302 1_555 ? ? ? ? ? ? ? 2.632 ? ? metalc17 metalc ? ? G MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 306 A HOH 459 1_555 ? ? ? ? ? ? ? 2.701 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 90 ? ASN A 94 ? VAL A 119 ASN A 123 AA1 2 SER A 58 ? TYR A 63 ? SER A 87 TYR A 92 AA1 3 THR A 111 ? PRO A 118 ? THR A 140 PRO A 147 AA1 4 GLY A 152 ? GLY A 159 ? GLY A 181 GLY A 188 AA1 5 GLY A 192 ? ASN A 195 ? GLY A 221 ASN A 224 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O GLU A 91 ? O GLU A 120 N ILE A 61 ? N ILE A 90 AA1 2 3 N ASN A 60 ? N ASN A 89 O VAL A 112 ? O VAL A 141 AA1 3 4 N VAL A 115 ? N VAL A 144 O LEU A 156 ? O LEU A 185 AA1 4 5 N GLY A 157 ? N GLY A 186 O GLY A 192 ? O GLY A 221 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A FMN 301 ? 23 'binding site for residue FMN A 301' AC2 Software A MG 302 ? 5 'binding site for residue MG A 302' AC3 Software A MG 303 ? 7 'binding site for residue MG A 303' AC4 Software A MG 304 ? 6 'binding site for residue MG A 304' AC5 Software A MG 305 ? 5 'binding site for residue MG A 305' AC6 Software A MG 306 ? 5 'binding site for residue MG A 306' AC7 Software A PEG 307 ? 2 'binding site for residue PEG A 307' AC8 Software A ACT 308 ? 1 'binding site for residue ACT A 308' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 23 THR A 65 ? THR A 94 . ? 1_555 ? 2 AC1 23 LEU A 66 ? LEU A 95 . ? 1_555 ? 3 AC1 23 GLY A 67 ? GLY A 96 . ? 1_555 ? 4 AC1 23 GLY A 68 ? GLY A 97 . ? 1_555 ? 5 AC1 23 SER A 69 ? SER A 98 . ? 1_555 ? 6 AC1 23 THR A 70 ? THR A 99 . ? 1_555 ? 7 AC1 23 PRO A 118 ? PRO A 147 . ? 1_555 ? 8 AC1 23 SER A 119 ? SER A 148 . ? 1_555 ? 9 AC1 23 TYR A 120 ? TYR A 149 . ? 1_555 ? 10 AC1 23 ALA A 121 ? ALA A 150 . ? 1_555 ? 11 AC1 23 GLY A 159 ? GLY A 188 . ? 1_555 ? 12 AC1 23 ASP A 160 ? ASP A 189 . ? 1_555 ? 13 AC1 23 TYR A 164 ? TYR A 193 . ? 1_555 ? 14 AC1 23 LEU A 168 ? LEU A 197 . ? 1_555 ? 15 AC1 23 PHE A 169 ? PHE A 198 . ? 1_555 ? 16 AC1 23 CYS A 170 ? CYS A 199 . ? 1_555 ? 17 AC1 23 TYR A 171 ? TYR A 200 . ? 1_555 ? 18 AC1 23 VAL A 196 ? VAL A 225 . ? 1_555 ? 19 AC1 23 MG C . ? MG A 302 . ? 1_555 ? 20 AC1 23 HOH J . ? HOH A 415 . ? 1_555 ? 21 AC1 23 HOH J . ? HOH A 435 . ? 1_555 ? 22 AC1 23 HOH J . ? HOH A 440 . ? 1_555 ? 23 AC1 23 HOH J . ? HOH A 452 . ? 1_555 ? 24 AC2 5 SER A 69 ? SER A 98 . ? 1_555 ? 25 AC2 5 THR A 70 ? THR A 99 . ? 1_555 ? 26 AC2 5 PHE A 73 ? PHE A 102 . ? 1_555 ? 27 AC2 5 PHE A 158 ? PHE A 187 . ? 1_555 ? 28 AC2 5 FMN B . ? FMN A 301 . ? 1_555 ? 29 AC3 7 LEU A 117 ? LEU A 146 . ? 1_555 ? 30 AC3 7 PRO A 118 ? PRO A 147 . ? 1_555 ? 31 AC3 7 SER A 119 ? SER A 148 . ? 1_555 ? 32 AC3 7 GLY A 157 ? GLY A 186 . ? 1_555 ? 33 AC3 7 PHE A 158 ? PHE A 187 . ? 1_555 ? 34 AC3 7 CYS A 170 ? CYS A 199 . ? 1_555 ? 35 AC3 7 ALA A 173 ? ALA A 202 . ? 1_555 ? 36 AC4 6 ALA A 154 ? ALA A 183 . ? 1_555 ? 37 AC4 6 VAL A 155 ? VAL A 184 . ? 1_555 ? 38 AC4 6 ASP A 177 ? ASP A 206 . ? 1_555 ? 39 AC4 6 ALA A 189 ? ALA A 218 . ? 1_555 ? 40 AC4 6 PRO A 190 ? PRO A 219 . ? 1_555 ? 41 AC4 6 LEU A 191 ? LEU A 220 . ? 1_555 ? 42 AC5 5 TYR A 120 ? TYR A 149 . ? 1_555 ? 43 AC5 5 ILE A 122 ? ILE A 151 . ? 1_555 ? 44 AC5 5 SER A 124 ? SER A 153 . ? 1_555 ? 45 AC5 5 ASP A 127 ? ASP A 156 . ? 1_555 ? 46 AC5 5 GLN A 172 ? GLN A 201 . ? 1_555 ? 47 AC6 5 SER A 64 ? SER A 93 . ? 1_555 ? 48 AC6 5 THR A 65 ? THR A 94 . ? 1_555 ? 49 AC6 5 ASN A 94 ? ASN A 123 . ? 1_555 ? 50 AC6 5 ASP A 96 ? ASP A 125 . ? 1_555 ? 51 AC6 5 HOH J . ? HOH A 459 . ? 1_555 ? 52 AC7 2 CYS A 57 ? CYS A 86 . ? 1_555 ? 53 AC7 2 HOH J . ? HOH A 405 . ? 1_555 ? 54 AC8 1 THR A 87 ? THR A 116 . ? 1_555 ? # _atom_sites.entry_id 6PUQ _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.035338 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001149 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013682 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023532 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 30 ? ? ? A . n A 1 2 LYS 2 31 ? ? ? A . n A 1 3 LEU 3 32 ? ? ? A . n A 1 4 ALA 4 33 ? ? ? A . n A 1 5 LYS 5 34 ? ? ? A . n A 1 6 PRO 6 35 ? ? ? A . n A 1 7 GLU 7 36 ? ? ? A . n A 1 8 LYS 8 37 ? ? ? A . n A 1 9 ILE 9 38 ? ? ? A . n A 1 10 ALA 10 39 ? ? ? A . n A 1 11 SER 11 40 ? ? ? A . n A 1 12 ALA 12 41 ? ? ? A . n A 1 13 THR 13 42 ? ? ? A . n A 1 14 SER 14 43 ? ? ? A . n A 1 15 LEU 15 44 ? ? ? A . n A 1 16 LYS 16 45 ? ? ? A . n A 1 17 GLY 17 46 ? ? ? A . n A 1 18 SER 18 47 ? ? ? A . n A 1 19 THR 19 48 ? ? ? A . n A 1 20 PRO 20 49 ? ? ? A . n A 1 21 LYS 21 50 ? ? ? A . n A 1 22 ALA 22 51 ? ? ? A . n A 1 23 PRO 23 52 ? ? ? A . n A 1 24 LYS 24 53 ? ? ? A . n A 1 25 VAL 25 54 ? ? ? A . n A 1 26 PHE 26 55 ? ? ? A . n A 1 27 ARG 27 56 ? ? ? A . n A 1 28 LYS 28 57 ? ? ? A . n A 1 29 THR 29 58 ? ? ? A . n A 1 30 GLU 30 59 ? ? ? A . n A 1 31 LYS 31 60 ? ? ? A . n A 1 32 THR 32 61 ? ? ? A . n A 1 33 LYS 33 62 ? ? ? A . n A 1 34 HIS 34 63 ? ? ? A . n A 1 35 SER 35 64 ? ? ? A . n A 1 36 ASN 36 65 ? ? ? A . n A 1 37 ARG 37 66 ? ? ? A . n A 1 38 LYS 38 67 ? ? ? A . n A 1 39 ILE 39 68 ? ? ? A . n A 1 40 ALA 40 69 ? ? ? A . n A 1 41 CYS 41 70 ? ? ? A . n A 1 42 GLU 42 71 ? ? ? A . n A 1 43 ALA 43 72 ? ? ? A . n A 1 44 SER 44 73 ? ? ? A . n A 1 45 THR 45 74 ? ? ? A . n A 1 46 LYS 46 75 ? ? ? A . n A 1 47 SER 47 76 ? ? ? A . n A 1 48 SER 48 77 ? ? ? A . n A 1 49 ARG 49 78 78 ARG ARG A . n A 1 50 LYS 50 79 79 LYS LYS A . n A 1 51 LEU 51 80 80 LEU LEU A . n A 1 52 THR 52 81 81 THR THR A . n A 1 53 ASP 53 82 82 ASP ASP A . n A 1 54 ILE 54 83 83 ILE ILE A . n A 1 55 SER 55 84 84 SER SER A . n A 1 56 ALA 56 85 85 ALA ALA A . n A 1 57 CYS 57 86 86 CYS CYS A . n A 1 58 SER 58 87 87 SER SER A . n A 1 59 ILE 59 88 88 ILE ILE A . n A 1 60 ASN 60 89 89 ASN ASN A . n A 1 61 ILE 61 90 90 ILE ILE A . n A 1 62 PHE 62 91 91 PHE PHE A . n A 1 63 TYR 63 92 92 TYR TYR A . n A 1 64 SER 64 93 93 SER SER A . n A 1 65 THR 65 94 94 THR THR A . n A 1 66 LEU 66 95 95 LEU LEU A . n A 1 67 GLY 67 96 96 GLY GLY A . n A 1 68 GLY 68 97 97 GLY GLY A . n A 1 69 SER 69 98 98 SER SER A . n A 1 70 THR 70 99 99 THR THR A . n A 1 71 GLN 71 100 100 GLN GLN A . n A 1 72 LYS 72 101 101 LYS LYS A . n A 1 73 PHE 73 102 102 PHE PHE A . n A 1 74 ALA 74 103 103 ALA ALA A . n A 1 75 GLU 75 104 104 GLU GLU A . n A 1 76 HIS 76 105 105 HIS HIS A . n A 1 77 VAL 77 106 106 VAL VAL A . n A 1 78 ALA 78 107 107 ALA ALA A . n A 1 79 ASP 79 108 108 ASP ASP A . n A 1 80 ARG 80 109 109 ARG ARG A . n A 1 81 ILE 81 110 110 ILE ILE A . n A 1 82 ARG 82 111 111 ARG ARG A . n A 1 83 SER 83 112 112 SER SER A . n A 1 84 SER 84 113 113 SER SER A . n A 1 85 LEU 85 114 114 LEU LEU A . n A 1 86 GLN 86 115 115 GLN GLN A . n A 1 87 THR 87 116 116 THR THR A . n A 1 88 GLU 88 117 117 GLU GLU A . n A 1 89 LEU 89 118 118 LEU LEU A . n A 1 90 VAL 90 119 119 VAL VAL A . n A 1 91 GLU 91 120 120 GLU GLU A . n A 1 92 ILE 92 121 121 ILE ILE A . n A 1 93 LEU 93 122 122 LEU LEU A . n A 1 94 ASN 94 123 123 ASN ASN A . n A 1 95 LEU 95 124 124 LEU LEU A . n A 1 96 ASP 96 125 125 ASP ASP A . n A 1 97 TYR 97 126 126 TYR TYR A . n A 1 98 ILE 98 127 127 ILE ILE A . n A 1 99 ASP 99 128 128 ASP ASP A . n A 1 100 LEU 100 129 129 LEU LEU A . n A 1 101 ASP 101 130 130 ASP ASP A . n A 1 102 GLU 102 131 131 GLU GLU A . n A 1 103 TYR 103 132 132 TYR TYR A . n A 1 104 PHE 104 133 133 PHE PHE A . n A 1 105 SER 105 134 134 SER SER A . n A 1 106 LYS 106 135 135 LYS LYS A . n A 1 107 GLY 107 136 136 GLY GLY A . n A 1 108 ASN 108 137 137 ASN ASN A . n A 1 109 SER 109 138 138 SER SER A . n A 1 110 ASN 110 139 139 ASN ASN A . n A 1 111 THR 111 140 140 THR THR A . n A 1 112 VAL 112 141 141 VAL VAL A . n A 1 113 TYR 113 142 142 TYR TYR A . n A 1 114 LEU 114 143 143 LEU LEU A . n A 1 115 VAL 115 144 144 VAL VAL A . n A 1 116 LEU 116 145 145 LEU LEU A . n A 1 117 LEU 117 146 146 LEU LEU A . n A 1 118 PRO 118 147 147 PRO PRO A . n A 1 119 SER 119 148 148 SER SER A . n A 1 120 TYR 120 149 149 TYR TYR A . n A 1 121 ALA 121 150 150 ALA ALA A . n A 1 122 ILE 122 151 151 ILE ILE A . n A 1 123 GLU 123 152 152 GLU GLU A . n A 1 124 SER 124 153 153 SER SER A . n A 1 125 SER 125 154 154 SER SER A . n A 1 126 ILE 126 155 155 ILE ILE A . n A 1 127 ASP 127 156 156 ASP ASP A . n A 1 128 TYR 128 157 157 TYR TYR A . n A 1 129 PHE 129 158 158 PHE PHE A . n A 1 130 LEU 130 159 159 LEU LEU A . n A 1 131 SER 131 160 160 SER SER A . n A 1 132 ALA 132 161 161 ALA ALA A . n A 1 133 LEU 133 162 162 LEU LEU A . n A 1 134 GLN 134 163 163 GLN GLN A . n A 1 135 THR 135 164 164 THR THR A . n A 1 136 THR 136 165 165 THR THR A . n A 1 137 ILE 137 166 166 ILE ILE A . n A 1 138 ASP 138 167 167 ASP ASP A . n A 1 139 ASP 139 168 168 ASP ASP A . n A 1 140 PHE 140 169 169 PHE PHE A . n A 1 141 ARG 141 170 170 ARG ARG A . n A 1 142 ILE 142 171 171 ILE ILE A . n A 1 143 VAL 143 172 172 VAL VAL A . n A 1 144 ALA 144 173 173 ALA ALA A . n A 1 145 ARG 145 174 174 ARG ARG A . n A 1 146 PRO 146 175 175 PRO PRO A . n A 1 147 LEU 147 176 176 LEU LEU A . n A 1 148 GLU 148 177 177 GLU GLU A . n A 1 149 LYS 149 178 178 LYS LYS A . n A 1 150 LEU 150 179 179 LEU LEU A . n A 1 151 ARG 151 180 180 ARG ARG A . n A 1 152 GLY 152 181 181 GLY GLY A . n A 1 153 PHE 153 182 182 PHE PHE A . n A 1 154 ALA 154 183 183 ALA ALA A . n A 1 155 VAL 155 184 184 VAL VAL A . n A 1 156 LEU 156 185 185 LEU LEU A . n A 1 157 GLY 157 186 186 GLY GLY A . n A 1 158 PHE 158 187 187 PHE PHE A . n A 1 159 GLY 159 188 188 GLY GLY A . n A 1 160 ASP 160 189 189 ASP ASP A . n A 1 161 PHE 161 190 190 PHE PHE A . n A 1 162 GLU 162 191 191 GLU GLU A . n A 1 163 GLN 163 192 192 GLN GLN A . n A 1 164 TYR 164 193 193 TYR TYR A . n A 1 165 ALA 165 194 194 ALA ALA A . n A 1 166 GLY 166 195 195 GLY GLY A . n A 1 167 ASP 167 196 196 ASP ASP A . n A 1 168 LEU 168 197 197 LEU LEU A . n A 1 169 PHE 169 198 198 PHE PHE A . n A 1 170 CYS 170 199 199 CYS CYS A . n A 1 171 TYR 171 200 200 TYR TYR A . n A 1 172 GLN 172 201 201 GLN GLN A . n A 1 173 ALA 173 202 202 ALA ALA A . n A 1 174 ILE 174 203 203 ILE ILE A . n A 1 175 ALA 175 204 204 ALA ALA A . n A 1 176 ALA 176 205 205 ALA ALA A . n A 1 177 ASP 177 206 206 ASP ASP A . n A 1 178 GLN 178 207 207 GLN GLN A . n A 1 179 ARG 179 208 208 ARG ARG A . n A 1 180 LEU 180 209 209 LEU LEU A . n A 1 181 ALA 181 210 210 ALA ALA A . n A 1 182 LYS 182 211 211 LYS LYS A . n A 1 183 LEU 183 212 212 LEU LEU A . n A 1 184 GLY 184 213 213 GLY GLY A . n A 1 185 ALA 185 214 214 ALA ALA A . n A 1 186 GLN 186 215 215 GLN GLN A . n A 1 187 ARG 187 216 216 ARG ARG A . n A 1 188 ILE 188 217 217 ILE ILE A . n A 1 189 ALA 189 218 218 ALA ALA A . n A 1 190 PRO 190 219 219 PRO PRO A . n A 1 191 LEU 191 220 220 LEU LEU A . n A 1 192 GLY 192 221 221 GLY GLY A . n A 1 193 VAL 193 222 222 VAL VAL A . n A 1 194 VAL 194 223 223 VAL VAL A . n A 1 195 ASN 195 224 224 ASN ASN A . n A 1 196 VAL 196 225 225 VAL VAL A . n A 1 197 LYS 197 226 226 LYS LYS A . n A 1 198 LEU 198 227 227 LEU LEU A . n A 1 199 GLU 199 228 228 GLU GLU A . n A 1 200 LYS 200 229 229 LYS LYS A . n A 1 201 ALA 201 230 230 ALA ALA A . n A 1 202 GLN 202 231 231 GLN GLN A . n A 1 203 VAL 203 232 232 VAL VAL A . n A 1 204 TYR 204 233 233 TYR TYR A . n A 1 205 GLU 205 234 234 GLU GLU A . n A 1 206 ALA 206 235 235 ALA ALA A . n A 1 207 MET 207 236 236 MET MET A . n A 1 208 GLU 208 237 237 GLU GLU A . n A 1 209 ALA 209 238 238 ALA ALA A . n A 1 210 TRP 210 239 239 TRP TRP A . n A 1 211 THR 211 240 240 THR THR A . n A 1 212 ASP 212 241 241 ASP ASP A . n A 1 213 LEU 213 242 242 LEU LEU A . n A 1 214 PHE 214 243 243 PHE PHE A . n A 1 215 LEU 215 244 244 LEU LEU A . n A 1 216 GLN 216 245 245 GLN GLN A . n A 1 217 TYR 217 246 246 TYR TYR A . n A 1 218 ALA 218 247 247 ALA ALA A . n A 1 219 LYS 219 248 248 LYS LYS A . n A 1 220 GLU 220 249 ? ? ? A . n A 1 221 LYS 221 250 ? ? ? A . n A 1 222 ALA 222 251 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN 1 301 1 FMN FMN A . C 3 MG 1 302 1 MG MG A . D 3 MG 1 303 2 MG MG A . E 3 MG 1 304 3 MG MG A . F 3 MG 1 305 4 MG MG A . G 3 MG 1 306 5 MG MG A . H 4 PEG 1 307 1 PEG PEG A . I 5 ACT 1 308 1 ACT ACT A . J 6 HOH 1 401 16 HOH HOH A . J 6 HOH 2 402 25 HOH HOH A . J 6 HOH 3 403 129 HOH HOH A . J 6 HOH 4 404 130 HOH HOH A . J 6 HOH 5 405 110 HOH HOH A . J 6 HOH 6 406 116 HOH HOH A . J 6 HOH 7 407 124 HOH HOH A . J 6 HOH 8 408 44 HOH HOH A . J 6 HOH 9 409 96 HOH HOH A . J 6 HOH 10 410 118 HOH HOH A . J 6 HOH 11 411 128 HOH HOH A . J 6 HOH 12 412 123 HOH HOH A . J 6 HOH 13 413 121 HOH HOH A . J 6 HOH 14 414 22 HOH HOH A . J 6 HOH 15 415 24 HOH HOH A . J 6 HOH 16 416 29 HOH HOH A . J 6 HOH 17 417 125 HOH HOH A . J 6 HOH 18 418 20 HOH HOH A . J 6 HOH 19 419 27 HOH HOH A . J 6 HOH 20 420 7 HOH HOH A . J 6 HOH 21 421 40 HOH HOH A . J 6 HOH 22 422 106 HOH HOH A . J 6 HOH 23 423 19 HOH HOH A . J 6 HOH 24 424 37 HOH HOH A . J 6 HOH 25 425 23 HOH HOH A . J 6 HOH 26 426 9 HOH HOH A . J 6 HOH 27 427 18 HOH HOH A . J 6 HOH 28 428 30 HOH HOH A . J 6 HOH 29 429 17 HOH HOH A . J 6 HOH 30 430 28 HOH HOH A . J 6 HOH 31 431 57 HOH HOH A . J 6 HOH 32 432 119 HOH HOH A . J 6 HOH 33 433 126 HOH HOH A . J 6 HOH 34 434 5 HOH HOH A . J 6 HOH 35 435 109 HOH HOH A . J 6 HOH 36 436 120 HOH HOH A . J 6 HOH 37 437 2 HOH HOH A . J 6 HOH 38 438 11 HOH HOH A . J 6 HOH 39 439 84 HOH HOH A . J 6 HOH 40 440 59 HOH HOH A . J 6 HOH 41 441 46 HOH HOH A . J 6 HOH 42 442 112 HOH HOH A . J 6 HOH 43 443 31 HOH HOH A . J 6 HOH 44 444 122 HOH HOH A . J 6 HOH 45 445 39 HOH HOH A . J 6 HOH 46 446 113 HOH HOH A . J 6 HOH 47 447 107 HOH HOH A . J 6 HOH 48 448 48 HOH HOH A . J 6 HOH 49 449 8 HOH HOH A . J 6 HOH 50 450 117 HOH HOH A . J 6 HOH 51 451 127 HOH HOH A . J 6 HOH 52 452 108 HOH HOH A . J 6 HOH 53 453 114 HOH HOH A . J 6 HOH 54 454 6 HOH HOH A . J 6 HOH 55 455 55 HOH HOH A . J 6 HOH 56 456 111 HOH HOH A . J 6 HOH 57 457 3 HOH HOH A . J 6 HOH 58 458 10 HOH HOH A . J 6 HOH 59 459 36 HOH HOH A . J 6 HOH 60 460 13 HOH HOH A . J 6 HOH 61 461 15 HOH HOH A . J 6 HOH 62 462 14 HOH HOH A . J 6 HOH 63 463 45 HOH HOH A . J 6 HOH 64 464 83 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OG ? A SER 64 ? A SER 93 ? 1_555 MG ? G MG . ? A MG 306 ? 1_555 N ? A THR 65 ? A THR 94 ? 1_555 63.6 ? 2 OG ? A SER 64 ? A SER 93 ? 1_555 MG ? G MG . ? A MG 306 ? 1_555 OD1 ? A ASN 94 ? A ASN 123 ? 1_555 119.3 ? 3 N ? A THR 65 ? A THR 94 ? 1_555 MG ? G MG . ? A MG 306 ? 1_555 OD1 ? A ASN 94 ? A ASN 123 ? 1_555 122.5 ? 4 OG ? A SER 64 ? A SER 93 ? 1_555 MG ? G MG . ? A MG 306 ? 1_555 OD2 ? A ASP 96 ? A ASP 125 ? 1_555 91.5 ? 5 N ? A THR 65 ? A THR 94 ? 1_555 MG ? G MG . ? A MG 306 ? 1_555 OD2 ? A ASP 96 ? A ASP 125 ? 1_555 138.3 ? 6 OD1 ? A ASN 94 ? A ASN 123 ? 1_555 MG ? G MG . ? A MG 306 ? 1_555 OD2 ? A ASP 96 ? A ASP 125 ? 1_555 98.6 ? 7 OG ? A SER 64 ? A SER 93 ? 1_555 MG ? G MG . ? A MG 306 ? 1_555 O ? J HOH . ? A HOH 459 ? 1_555 152.3 ? 8 N ? A THR 65 ? A THR 94 ? 1_555 MG ? G MG . ? A MG 306 ? 1_555 O ? J HOH . ? A HOH 459 ? 1_555 99.8 ? 9 OD1 ? A ASN 94 ? A ASN 123 ? 1_555 MG ? G MG . ? A MG 306 ? 1_555 O ? J HOH . ? A HOH 459 ? 1_555 88.2 ? 10 OD2 ? A ASP 96 ? A ASP 125 ? 1_555 MG ? G MG . ? A MG 306 ? 1_555 O ? J HOH . ? A HOH 459 ? 1_555 87.6 ? 11 OG ? A SER 69 ? A SER 98 ? 1_555 MG ? C MG . ? A MG 302 ? 1_555 OG1 ? A THR 70 ? A THR 99 ? 1_555 92.6 ? 12 OG ? A SER 69 ? A SER 98 ? 1_555 MG ? C MG . ? A MG 302 ? 1_555 "O4'" ? B FMN . ? A FMN 301 ? 1_555 79.6 ? 13 OG1 ? A THR 70 ? A THR 99 ? 1_555 MG ? C MG . ? A MG 302 ? 1_555 "O4'" ? B FMN . ? A FMN 301 ? 1_555 119.0 ? 14 O ? A LEU 117 ? A LEU 146 ? 1_555 MG ? D MG . ? A MG 303 ? 1_555 OG ? A SER 119 ? A SER 148 ? 1_555 126.9 ? 15 O ? A LEU 117 ? A LEU 146 ? 1_555 MG ? D MG . ? A MG 303 ? 1_555 O ? A PHE 158 ? A PHE 187 ? 1_555 84.1 ? 16 OG ? A SER 119 ? A SER 148 ? 1_555 MG ? D MG . ? A MG 303 ? 1_555 O ? A PHE 158 ? A PHE 187 ? 1_555 106.0 ? 17 O ? A ILE 122 ? A ILE 151 ? 1_555 MG ? F MG . ? A MG 305 ? 1_555 OG ? A SER 124 ? A SER 153 ? 1_555 105.2 ? 18 O ? A ILE 122 ? A ILE 151 ? 1_555 MG ? F MG . ? A MG 305 ? 1_555 NE2 ? A GLN 172 ? A GLN 201 ? 1_555 138.3 ? 19 OG ? A SER 124 ? A SER 153 ? 1_555 MG ? F MG . ? A MG 305 ? 1_555 NE2 ? A GLN 172 ? A GLN 201 ? 1_555 116.1 ? 20 N ? A VAL 155 ? A VAL 184 ? 1_555 MG ? E MG . ? A MG 304 ? 1_555 OD1 ? A ASP 177 ? A ASP 206 ? 1_555 114.1 ? 21 N ? A VAL 155 ? A VAL 184 ? 1_555 MG ? E MG . ? A MG 304 ? 1_555 O ? A ALA 189 ? A ALA 218 ? 1_555 122.6 ? 22 OD1 ? A ASP 177 ? A ASP 206 ? 1_555 MG ? E MG . ? A MG 304 ? 1_555 O ? A ALA 189 ? A ALA 218 ? 1_555 119.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-07-22 2 'Structure model' 1 1 2022-06-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' audit_author 2 2 'Structure model' citation 3 2 'Structure model' citation_author 4 2 'Structure model' database_2 5 2 'Structure model' pdbx_unobs_or_zero_occ_atoms 6 2 'Structure model' struct # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_audit_author.name' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.pdbx_database_id_PubMed' 8 2 'Structure model' '_citation.title' 9 2 'Structure model' '_citation.year' 10 2 'Structure model' '_citation_author.identifier_ORCID' 11 2 'Structure model' '_citation_author.name' 12 2 'Structure model' '_database_2.pdbx_DOI' 13 2 'Structure model' '_database_2.pdbx_database_accession' 14 2 'Structure model' '_struct.title' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 0.5.27 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.11.1_2575)' 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? DIALS ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _pdbx_entry_details.entry_id 6PUQ _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OD1 A ASN 224 ? B O A HOH 401 ? ? 1.96 2 1 ND2 A ASN 224 ? B O A HOH 402 ? ? 2.00 3 1 NE2 A GLN 215 ? A O A HOH 403 ? ? 2.08 4 1 OE1 A GLN 215 ? B O A HOH 404 ? ? 2.09 5 1 O1 A PEG 307 ? ? O A HOH 405 ? ? 2.12 6 1 NZ A LYS 248 ? ? O A HOH 406 ? ? 2.17 # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag Y _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 0 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id A _pdbx_unobs_or_zero_occ_atoms.auth_comp_id MET _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 236 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id SD _pdbx_unobs_or_zero_occ_atoms.label_alt_id A _pdbx_unobs_or_zero_occ_atoms.label_asym_id A _pdbx_unobs_or_zero_occ_atoms.label_comp_id MET _pdbx_unobs_or_zero_occ_atoms.label_seq_id 207 _pdbx_unobs_or_zero_occ_atoms.label_atom_id SD # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LYS 30 ? A LYS 1 2 1 Y 1 A LYS 31 ? A LYS 2 3 1 Y 1 A LEU 32 ? A LEU 3 4 1 Y 1 A ALA 33 ? A ALA 4 5 1 Y 1 A LYS 34 ? A LYS 5 6 1 Y 1 A PRO 35 ? A PRO 6 7 1 Y 1 A GLU 36 ? A GLU 7 8 1 Y 1 A LYS 37 ? A LYS 8 9 1 Y 1 A ILE 38 ? A ILE 9 10 1 Y 1 A ALA 39 ? A ALA 10 11 1 Y 1 A SER 40 ? A SER 11 12 1 Y 1 A ALA 41 ? A ALA 12 13 1 Y 1 A THR 42 ? A THR 13 14 1 Y 1 A SER 43 ? A SER 14 15 1 Y 1 A LEU 44 ? A LEU 15 16 1 Y 1 A LYS 45 ? A LYS 16 17 1 Y 1 A GLY 46 ? A GLY 17 18 1 Y 1 A SER 47 ? A SER 18 19 1 Y 1 A THR 48 ? A THR 19 20 1 Y 1 A PRO 49 ? A PRO 20 21 1 Y 1 A LYS 50 ? A LYS 21 22 1 Y 1 A ALA 51 ? A ALA 22 23 1 Y 1 A PRO 52 ? A PRO 23 24 1 Y 1 A LYS 53 ? A LYS 24 25 1 Y 1 A VAL 54 ? A VAL 25 26 1 Y 1 A PHE 55 ? A PHE 26 27 1 Y 1 A ARG 56 ? A ARG 27 28 1 Y 1 A LYS 57 ? A LYS 28 29 1 Y 1 A THR 58 ? A THR 29 30 1 Y 1 A GLU 59 ? A GLU 30 31 1 Y 1 A LYS 60 ? A LYS 31 32 1 Y 1 A THR 61 ? A THR 32 33 1 Y 1 A LYS 62 ? A LYS 33 34 1 Y 1 A HIS 63 ? A HIS 34 35 1 Y 1 A SER 64 ? A SER 35 36 1 Y 1 A ASN 65 ? A ASN 36 37 1 Y 1 A ARG 66 ? A ARG 37 38 1 Y 1 A LYS 67 ? A LYS 38 39 1 Y 1 A ILE 68 ? A ILE 39 40 1 Y 1 A ALA 69 ? A ALA 40 41 1 Y 1 A CYS 70 ? A CYS 41 42 1 Y 1 A GLU 71 ? A GLU 42 43 1 Y 1 A ALA 72 ? A ALA 43 44 1 Y 1 A SER 73 ? A SER 44 45 1 Y 1 A THR 74 ? A THR 45 46 1 Y 1 A LYS 75 ? A LYS 46 47 1 Y 1 A SER 76 ? A SER 47 48 1 Y 1 A SER 77 ? A SER 48 49 1 Y 1 A GLU 249 ? A GLU 220 50 1 Y 1 A LYS 250 ? A LYS 221 51 1 Y 1 A ALA 251 ? A ALA 222 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id FMN _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id FMN _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FLAVIN MONONUCLEOTIDE' FMN 3 'MAGNESIUM ION' MG 4 'DI(HYDROXYETHYL)ETHER' PEG 5 'ACETATE ION' ACT 6 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'equilibrium centrifugation' _pdbx_struct_assembly_auth_evidence.details ? #