HEADER HYDROLASE 19-JUL-19 6PV5 TITLE STRUCTURE OF CPGH84B COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE O-GLCNACASE NAGJ; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PERFRINGENS (STRAIN ATCC 13124 / SOURCE 3 DSM 756 / JCM 1290 / NCIMB 6125 / NCTC 8237 / TYPE A); SOURCE 4 ORGANISM_TAXID: 195103; SOURCE 5 STRAIN: ATCC 13124 / DSM 756 / JCM 1290 / NCIMB 6125 / NCTC 8237 / SOURCE 6 TYPE A; SOURCE 7 GENE: CPF_0875; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS GLYCOSIDE HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.PLUVINAGE,A.B.BORASTON REVDAT 5 11-OCT-23 6PV5 1 REMARK REVDAT 4 08-JAN-20 6PV5 1 REMARK REVDAT 3 01-JAN-20 6PV5 1 JRNL REVDAT 2 20-NOV-19 6PV5 1 JRNL REVDAT 1 11-SEP-19 6PV5 0 JRNL AUTH B.PLUVINAGE,P.M.MASSEL,K.BURAK,A.B.BORASTON JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF FOUR FAMILY 84 JRNL TITL 2 GLYCOSIDE HYDROLASES FROM THE OPPORTUNISTIC PATHOGEN JRNL TITL 3 CLOSTRIDIUM PERFRINGENS. JRNL REF GLYCOBIOLOGY V. 30 49 2019 JRNL REFN ESSN 1460-2423 JRNL PMID 31701135 JRNL DOI 10.1093/GLYCOB/CWZ069 REMARK 2 REMARK 2 RESOLUTION. 2.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0253 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 35974 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1861 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.18 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.24 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2597 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 150 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4313 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 233 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.54000 REMARK 3 B22 (A**2) : 0.54000 REMARK 3 B33 (A**2) : -1.74000 REMARK 3 B12 (A**2) : 0.27000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.216 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.189 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.134 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.221 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4492 ; 0.005 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6095 ; 1.296 ; 1.632 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 574 ; 6.679 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 220 ;32.356 ;24.318 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 718 ;14.348 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;13.980 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 600 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3460 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6PV5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1000243153. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37842 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.180 REMARK 200 RESOLUTION RANGE LOW (A) : 39.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 9.40 REMARK 200 R MERGE FOR SHELL (I) : 0.49100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2V5C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS HCL AND 2.0 M AMMONIUM REMARK 280 SULPHATE, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 85.69450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.47574 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 42.93233 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 85.69450 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 49.47574 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 42.93233 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 85.69450 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 49.47574 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 42.93233 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 85.69450 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 49.47574 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 42.93233 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 85.69450 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 49.47574 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 42.93233 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 85.69450 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 49.47574 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 42.93233 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 98.95149 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 85.86467 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 98.95149 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 85.86467 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 98.95149 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 85.86467 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 98.95149 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 85.86467 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 98.95149 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 85.86467 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 98.95149 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 85.86467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 743 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 774 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 GLY A -21 REMARK 465 SER A -20 REMARK 465 SER A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 SER A -12 REMARK 465 SER A -11 REMARK 465 GLY A -10 REMARK 465 LEU A -9 REMARK 465 VAL A -8 REMARK 465 PRO A -7 REMARK 465 ARG A -6 REMARK 465 GLY A -5 REMARK 465 SER A -4 REMARK 465 HIS A -3 REMARK 465 MET A -2 REMARK 465 ALA A -1 REMARK 465 SER A 0 REMARK 465 ASP A 1 REMARK 465 GLU A 2 REMARK 465 GLY A 3 REMARK 465 LEU A 4 REMARK 465 LYS A 5 REMARK 465 ASN A 6 REMARK 465 GLU A 7 REMARK 465 ILE A 8 REMARK 465 LYS A 9 REMARK 465 ASN A 10 REMARK 465 ASN A 11 REMARK 465 ASP A 12 REMARK 465 ILE A 13 REMARK 465 THR A 14 REMARK 465 LYS A 15 REMARK 465 GLY A 44 REMARK 465 ASP A 45 REMARK 465 PHE A 62 REMARK 465 GLY A 63 REMARK 465 ILE A 71 REMARK 465 GLU A 72 REMARK 465 GLY A 73 REMARK 465 ALA A 74 REMARK 465 THR A 75 REMARK 465 THR A 76 REMARK 465 ILE A 77 REMARK 465 ASN A 116 REMARK 465 THR A 117 REMARK 465 GLU A 118 REMARK 465 GLY A 119 REMARK 465 GLU A 146 REMARK 465 ASP A 147 REMARK 465 GLU A 598 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 16 CG OD1 OD2 REMARK 470 ILE A 17 CG1 CG2 CD1 REMARK 470 LYS A 24 CG CD CE NZ REMARK 470 ASN A 30 CG OD1 ND2 REMARK 470 SER A 31 OG REMARK 470 GLU A 32 CG CD OE1 OE2 REMARK 470 GLU A 36 CG CD OE1 OE2 REMARK 470 ASP A 37 CG OD1 OD2 REMARK 470 SER A 38 OG REMARK 470 VAL A 39 CG1 CG2 REMARK 470 ASN A 40 CG OD1 ND2 REMARK 470 ILE A 41 CG1 CG2 CD1 REMARK 470 VAL A 42 CG1 CG2 REMARK 470 LEU A 46 CG CD1 CD2 REMARK 470 THR A 49 OG1 CG2 REMARK 470 GLU A 53 CG CD OE1 OE2 REMARK 470 GLU A 61 CG CD OE1 OE2 REMARK 470 ILE A 64 CG1 CG2 CD1 REMARK 470 LYS A 65 CG CD CE NZ REMARK 470 ILE A 66 CG1 CG2 CD1 REMARK 470 ASN A 67 CG OD1 ND2 REMARK 470 GLU A 68 CG CD OE1 OE2 REMARK 470 SER A 69 OG REMARK 470 GLU A 70 CG CD OE1 OE2 REMARK 470 TYR A 78 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE A 79 CG1 CG2 CD1 REMARK 470 GLU A 81 CG CD OE1 OE2 REMARK 470 ASP A 83 CG OD1 OD2 REMARK 470 ILE A 86 CG1 CG2 CD1 REMARK 470 GLU A 88 CG CD OE1 OE2 REMARK 470 MET A 89 CG SD CE REMARK 470 GLU A 90 CG CD OE1 OE2 REMARK 470 ASN A 91 CG OD1 ND2 REMARK 470 THR A 92 OG1 CG2 REMARK 470 LEU A 93 CG CD1 CD2 REMARK 470 GLU A 94 CG CD OE1 OE2 REMARK 470 GLU A 95 CG CD OE1 OE2 REMARK 470 MET A 96 CG SD CE REMARK 470 VAL A 98 CG1 CG2 REMARK 470 ASP A 99 CG OD1 OD2 REMARK 470 THR A 100 OG1 CG2 REMARK 470 GLU A 115 CG CD OE1 OE2 REMARK 470 LYS A 121 CG CD CE NZ REMARK 470 ILE A 122 CG1 CG2 CD1 REMARK 470 ARG A 125 NE CZ NH1 NH2 REMARK 470 LYS A 140 CG CD CE NZ REMARK 470 LYS A 144 CG CD CE NZ REMARK 470 LYS A 145 CG CD CE NZ REMARK 470 ASN A 148 CG OD1 ND2 REMARK 470 LYS A 149 CG CD CE NZ REMARK 470 VAL A 150 CG1 CG2 REMARK 470 ILE A 151 CG1 CG2 CD1 REMARK 470 LEU A 152 CG CD1 CD2 REMARK 470 LYS A 158 CE NZ REMARK 470 GLU A 180 CG CD OE1 OE2 REMARK 470 LYS A 187 CG CD CE NZ REMARK 470 LEU A 220 CG CD1 CD2 REMARK 470 LYS A 224 CG CD CE NZ REMARK 470 LYS A 228 CG CD CE NZ REMARK 470 GLU A 252 CG CD OE1 OE2 REMARK 470 LYS A 259 CG CD CE NZ REMARK 470 GLU A 284 CG CD OE1 OE2 REMARK 470 GLU A 307 CG CD OE1 OE2 REMARK 470 LYS A 310 CE NZ REMARK 470 GLU A 328 CG CD OE1 OE2 REMARK 470 GLU A 339 CG CD OE1 OE2 REMARK 470 GLU A 363 CG CD OE1 OE2 REMARK 470 LYS A 443 CG CD CE NZ REMARK 470 GLU A 455 CG CD OE1 OE2 REMARK 470 GLU A 523 CG CD OE1 OE2 REMARK 470 LYS A 558 CG CD CE NZ REMARK 470 MET A 560 CG SD CE REMARK 470 TRP A 564 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 564 CZ3 CH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 39 -64.15 -121.02 REMARK 500 ASN A 40 106.52 72.34 REMARK 500 MET A 96 42.92 -87.25 REMARK 500 SER A 102 58.62 -118.62 REMARK 500 GLU A 107 -3.15 73.45 REMARK 500 ARG A 208 -81.70 -143.32 REMARK 500 LYS A 210 45.09 -109.47 REMARK 500 PRO A 216 169.68 -49.31 REMARK 500 ASP A 246 -4.70 -143.46 REMARK 500 PHE A 302 -65.70 -127.91 REMARK 500 LYS A 388 65.56 -153.48 REMARK 500 SER A 467 48.45 -145.62 REMARK 500 LEU A 470 -119.23 -111.99 REMARK 500 SER A 477 64.35 32.03 REMARK 500 ASP A 559 79.58 -107.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 605 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6PV4 RELATED DB: PDB DBREF1 6PV5 A 1 598 UNP A0A0H2YTZ1_CLOP1 DBREF2 6PV5 A A0A0H2YTZ1 31 628 SEQADV 6PV5 MET A -22 UNP A0A0H2YTZ INITIATING METHIONINE SEQADV 6PV5 GLY A -21 UNP A0A0H2YTZ EXPRESSION TAG SEQADV 6PV5 SER A -20 UNP A0A0H2YTZ EXPRESSION TAG SEQADV 6PV5 SER A -19 UNP A0A0H2YTZ EXPRESSION TAG SEQADV 6PV5 HIS A -18 UNP A0A0H2YTZ EXPRESSION TAG SEQADV 6PV5 HIS A -17 UNP A0A0H2YTZ EXPRESSION TAG SEQADV 6PV5 HIS A -16 UNP A0A0H2YTZ EXPRESSION TAG SEQADV 6PV5 HIS A -15 UNP A0A0H2YTZ EXPRESSION TAG SEQADV 6PV5 HIS A -14 UNP A0A0H2YTZ EXPRESSION TAG SEQADV 6PV5 HIS A -13 UNP A0A0H2YTZ EXPRESSION TAG SEQADV 6PV5 SER A -12 UNP A0A0H2YTZ EXPRESSION TAG SEQADV 6PV5 SER A -11 UNP A0A0H2YTZ EXPRESSION TAG SEQADV 6PV5 GLY A -10 UNP A0A0H2YTZ EXPRESSION TAG SEQADV 6PV5 LEU A -9 UNP A0A0H2YTZ EXPRESSION TAG SEQADV 6PV5 VAL A -8 UNP A0A0H2YTZ EXPRESSION TAG SEQADV 6PV5 PRO A -7 UNP A0A0H2YTZ EXPRESSION TAG SEQADV 6PV5 ARG A -6 UNP A0A0H2YTZ EXPRESSION TAG SEQADV 6PV5 GLY A -5 UNP A0A0H2YTZ EXPRESSION TAG SEQADV 6PV5 SER A -4 UNP A0A0H2YTZ EXPRESSION TAG SEQADV 6PV5 HIS A -3 UNP A0A0H2YTZ EXPRESSION TAG SEQADV 6PV5 MET A -2 UNP A0A0H2YTZ EXPRESSION TAG SEQADV 6PV5 ALA A -1 UNP A0A0H2YTZ EXPRESSION TAG SEQADV 6PV5 SER A 0 UNP A0A0H2YTZ EXPRESSION TAG SEQRES 1 A 621 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 621 LEU VAL PRO ARG GLY SER HIS MET ALA SER ASP GLU GLY SEQRES 3 A 621 LEU LYS ASN GLU ILE LYS ASN ASN ASP ILE THR LYS ASP SEQRES 4 A 621 ILE SER ILE TYR PRO THR PRO LYS ASP MET THR VAL GLY SEQRES 5 A 621 ASN SER GLU PHE THR LEU GLU ASP SER VAL ASN ILE VAL SEQRES 6 A 621 GLY GLY ASP LEU ALA ASP THR TYR ALA PHE GLU LEU LEU SEQRES 7 A 621 LYS ASN MET LEU THR GLU PHE GLY ILE LYS ILE ASN GLU SEQRES 8 A 621 SER GLU ILE GLU GLY ALA THR THR ILE TYR ILE GLY GLU SEQRES 9 A 621 SER ASP ASP ASN ILE GLU GLU MET GLU ASN THR LEU GLU SEQRES 10 A 621 GLU MET ASN VAL ASP THR SER SER ILE SER LYS ASP GLU SEQRES 11 A 621 GLY TYR VAL LEU VAL THR ASP GLU ASN THR GLU GLY ASN SEQRES 12 A 621 LYS ILE VAL ILE ARG GLY ASN ASP GLU THR GLY THR PHE SEQRES 13 A 621 TYR GLY VAL LYS SER LEU LYS GLN LEU ILE LYS LYS GLU SEQRES 14 A 621 ASP ASN LYS VAL ILE LEU ASP GLU VAL VAL ILE LYS ASP SEQRES 15 A 621 GLU PRO SER PHE LYS MET ARG ALA VAL VAL GLU GLY PHE SEQRES 16 A 621 TYR GLY THR PRO TRP SER GLN GLU GLU ARG LEU ASP GLN SEQRES 17 A 621 ILE LYS MET TYR GLY GLU TYR LYS MET ASN ALA TYR ILE SEQRES 18 A 621 TYR ALA PRO LYS SER ASP PRO TYR HIS ARG GLU LYS TRP SEQRES 19 A 621 ARG GLU PRO TYR PRO ALA SER GLU LEU ASP ARG MET LYS SEQRES 20 A 621 GLU LEU ILE LYS THR ALA ASN GLU ASN LYS VAL ASP PHE SEQRES 21 A 621 VAL PHE ALA ILE SER PRO GLY LEU ASP ILE LYS PHE GLU SEQRES 22 A 621 GLY GLU GLU GLY GLU ALA ASP PHE LYS ALA LEU ILE ASN SEQRES 23 A 621 LYS ALA GLU THR LEU TYR ASP MET GLY VAL ARG SER PHE SEQRES 24 A 621 ALA ILE LEU TRP ASP ASP ILE GLU ASN ARG SER GLY VAL SEQRES 25 A 621 GLN GLN ALA GLU VAL LEU ASN ARG PHE ASN LYS GLU PHE SEQRES 26 A 621 ILE LYS ASN LYS GLU GLY VAL LYS PRO LEU ILE THR VAL SEQRES 27 A 621 PRO VAL GLU TYR TRP GLY SER SER MET PHE ASN GLY GLU SEQRES 28 A 621 GLU VAL LYS THR TYR THR LYS GLU PHE ALA GLU THR LEU SEQRES 29 A 621 ASP LYS ASP ILE GLU VAL MET TRP THR GLY ASN ASP VAL SEQRES 30 A 621 ILE PRO PRO ASN GLY VAL SER LEU GLU ASP ALA LYS LYS SEQRES 31 A 621 VAL SER ASN VAL TYR ASN ARG LYS MET MET LEU TRP TRP SEQRES 32 A 621 ASN TYR PRO VAL ASN ASP TYR LYS GLU ASP LYS MET ALA SEQRES 33 A 621 LEU GLY PRO ILE TYR ASP LEU ASP ARG ASN LEU ASP GLU SEQRES 34 A 621 GLU VAL SER GLY PHE ILE VAL ASN PRO MET ARG PHE SER SEQRES 35 A 621 ASP ALA SER LYS ILE SER THR LEU THR GLY ALA ASP TYR SEQRES 36 A 621 GLY TRP ASN SER VAL SER TYR GLU ALA GLU LYS SER TRP SEQRES 37 A 621 ASP LYS ALA ILE GLU ILE ILE ALA GLY GLU MET LYS GLU SEQRES 38 A 621 GLU PHE LYS ILE PHE ALA ASN HIS SER THR ARG LEU ASP SEQRES 39 A 621 THR GLY ARG PRO ASP SER PRO GLU ILE LYS ASN THR ILE SEQRES 40 A 621 ASP SER LEU TRP GLU LYS TRP GLU ALA GLY SER ASP ILE SEQRES 41 A 621 SER LEU GLU LEU SER ASN LEU GLN ASN GLU PHE SER LYS SEQRES 42 A 621 MET VAL GLN VAL PRO ASN LYS LEU ARG SER ASN LEU GLU SEQRES 43 A 621 ASN LYS ALA LEU LEU ASN GLN LEU ASP SER HIS LEU SER SEQRES 44 A 621 LYS PHE GLU ILE TYR GLY ASN ALA GLY LEU LYS SER ILE SEQRES 45 A 621 GLU ILE LEU GLN ASP ILE VAL ASN LYS ASP MET SER GLU SEQRES 46 A 621 PHE TRP SER ASP ASN PHE GLU GLY ILE LYS LEU LEU ARG SEQRES 47 A 621 ASN LEU ASP GLY ILE LYS ALA THR ILE ALA ASN ASN VAL SEQRES 48 A 621 VAL ASP PRO PHE ILE ARG LYS VAL HIS GLU HET EDO A 601 4 HET EDO A 602 4 HET EDO A 603 4 HET EDO A 604 4 HET EDO A 605 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 5(C2 H6 O2) FORMUL 7 HOH *233(H2 O) HELIX 1 AA1 ASP A 48 THR A 60 1 13 HELIX 2 AA2 ASP A 84 GLU A 88 5 5 HELIX 3 AA3 MET A 89 MET A 96 1 8 HELIX 4 AA4 ASP A 128 GLN A 141 1 14 HELIX 5 AA5 SER A 178 TYR A 192 1 15 HELIX 6 AA6 ASP A 204 ARG A 208 5 5 HELIX 7 AA7 PRO A 216 SER A 218 5 3 HELIX 8 AA8 GLU A 219 ASN A 233 1 15 HELIX 9 AA9 SER A 242 ASP A 246 5 5 HELIX 10 AB1 GLU A 250 GLY A 272 1 23 HELIX 11 AB2 SER A 287 PHE A 302 1 16 HELIX 12 AB3 ILE A 303 LYS A 306 5 4 HELIX 13 AB4 TRP A 320 SER A 323 5 4 HELIX 14 AB5 LYS A 331 LEU A 341 1 11 HELIX 15 AB6 SER A 361 ASN A 373 1 13 HELIX 16 AB7 ASN A 403 GLU A 406 5 4 HELIX 17 AB8 SER A 419 ALA A 421 5 3 HELIX 18 AB9 SER A 422 ASN A 435 1 14 HELIX 19 AC1 GLU A 440 GLY A 454 1 15 HELIX 20 AC2 MET A 456 ASN A 465 1 10 HELIX 21 AC3 SER A 477 ALA A 493 1 17 HELIX 22 AC4 ILE A 497 LEU A 522 1 26 HELIX 23 AC5 ASN A 524 ASN A 557 1 34 HELIX 24 AC6 ASP A 559 GLY A 579 1 21 HELIX 25 AC7 VAL A 588 HIS A 597 1 10 SHEET 1 AA1 6 ASP A 25 VAL A 28 0 SHEET 2 AA1 6 VAL A 155 ASP A 159 -1 O VAL A 156 N THR A 27 SHEET 3 AA1 6 TYR A 109 ASP A 114 -1 N LEU A 111 O ILE A 157 SHEET 4 AA1 6 LYS A 121 GLY A 126 -1 O ARG A 125 N VAL A 110 SHEET 5 AA1 6 ILE A 79 ASP A 83 1 N GLU A 81 O ILE A 124 SHEET 6 AA1 6 ILE A 41 VAL A 42 1 N VAL A 42 O GLY A 80 SHEET 1 AA2 2 ILE A 143 LYS A 144 0 SHEET 2 AA2 2 ILE A 151 LEU A 152 -1 O ILE A 151 N LYS A 144 SHEET 1 AA3 9 MET A 165 VAL A 169 0 SHEET 2 AA3 9 ALA A 196 TYR A 199 1 O ILE A 198 N VAL A 168 SHEET 3 AA3 9 ASP A 236 ILE A 241 1 O ASP A 236 N TYR A 197 SHEET 4 AA3 9 SER A 275 LEU A 279 1 O SER A 275 N PHE A 239 SHEET 5 AA3 9 ILE A 313 VAL A 315 1 O ILE A 313 N ILE A 278 SHEET 6 AA3 9 GLU A 346 TRP A 349 1 O MET A 348 N THR A 314 SHEET 7 AA3 9 MET A 376 TRP A 380 1 O TRP A 379 N TRP A 349 SHEET 8 AA3 9 VAL A 408 VAL A 413 1 O ILE A 412 N TRP A 380 SHEET 9 AA3 9 MET A 165 VAL A 169 1 N MET A 165 O PHE A 411 SHEET 1 AA4 2 PHE A 325 ASN A 326 0 SHEET 2 AA4 2 GLU A 329 VAL A 330 -1 O GLU A 329 N ASN A 326 CISPEP 1 TYR A 20 PRO A 21 0 -3.42 CISPEP 2 TYR A 382 PRO A 383 0 7.47 SITE 1 AC1 4 ASN A 381 ASP A 386 GLU A 489 HOH A 812 SITE 1 AC2 5 ASP A 446 LYS A 457 GLU A 458 LYS A 461 SITE 2 AC2 5 HOH A 788 SITE 1 AC3 4 LYS A 343 ARG A 374 LYS A 375 GLU A 407 SITE 1 AC4 3 THR A 175 ARG A 417 HOH A 722 SITE 1 AC5 6 ARG A 286 GLU A 318 LYS A 331 THR A 332 SITE 2 AC5 6 TYR A 333 HOH A 857 CRYST1 171.389 171.389 128.797 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005835 0.003369 0.000000 0.00000 SCALE2 0.000000 0.006737 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007764 0.00000