HEADER BIOSYNTHETIC PROTEIN 20-JUL-19 6PVF TITLE CRYSTAL STRUCTURE OF PHQK IN COMPLEX WITH MALBRANCHEAMIDE B COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAD MONOOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PENICILLIUM FELLUTANUM; SOURCE 3 ORGANISM_TAXID: 70095; SOURCE 4 GENE: PHQK; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PKLD116 KEYWDS FLAVIN, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.E.FRALEY,J.L.SMITH,D.H.SHERMAN REVDAT 2 19-FEB-20 6PVF 1 JRNL REVDAT 1 22-JAN-20 6PVF 0 JRNL AUTH A.E.FRALEY,K.CADDELL HAATVEIT,Y.YE,S.P.KELLY,S.A.NEWMISTER, JRNL AUTH 2 F.YU,R.M.WILLIAMS,J.L.SMITH,K.N.HOUK,D.H.SHERMAN JRNL TITL MOLECULAR BASIS FOR SPIROCYCLE FORMATION IN THE JRNL TITL 2 PARAHERQUAMIDE BIOSYNTHETIC PATHWAY. JRNL REF J.AM.CHEM.SOC. V. 142 2244 2020 JRNL REFN ESSN 1520-5126 JRNL PMID 31904957 JRNL DOI 10.1021/JACS.9B09070 REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 100627 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.750 REMARK 3 FREE R VALUE TEST SET COUNT : 3778 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.3100 - 5.0683 1.00 3642 144 0.1515 0.1844 REMARK 3 2 5.0683 - 4.0235 1.00 3623 144 0.1275 0.1233 REMARK 3 3 4.0235 - 3.5151 1.00 3658 147 0.1268 0.1564 REMARK 3 4 3.5151 - 3.1938 1.00 3612 143 0.1440 0.2038 REMARK 3 5 3.1938 - 2.9649 1.00 3652 142 0.1547 0.1957 REMARK 3 6 2.9649 - 2.7901 1.00 3630 146 0.1608 0.1666 REMARK 3 7 2.7901 - 2.6504 1.00 3654 139 0.1646 0.2081 REMARK 3 8 2.6504 - 2.5350 1.00 3668 144 0.1651 0.2620 REMARK 3 9 2.5350 - 2.4374 1.00 3631 142 0.1698 0.2492 REMARK 3 10 2.4374 - 2.3533 1.00 3654 146 0.1663 0.1937 REMARK 3 11 2.3533 - 2.2797 1.00 3612 141 0.1641 0.2168 REMARK 3 12 2.2797 - 2.2146 1.00 3632 137 0.1938 0.2402 REMARK 3 13 2.2146 - 2.1563 1.00 3662 143 0.1724 0.2150 REMARK 3 14 2.1563 - 2.1037 1.00 3652 142 0.1859 0.2198 REMARK 3 15 2.1037 - 2.0558 1.00 3681 138 0.1945 0.2408 REMARK 3 16 2.0558 - 2.0121 1.00 3593 134 0.1894 0.2445 REMARK 3 17 2.0121 - 1.9718 1.00 3665 147 0.1862 0.2394 REMARK 3 18 1.9718 - 1.9346 1.00 3633 139 0.2021 0.2351 REMARK 3 19 1.9346 - 1.9001 1.00 3663 143 0.2903 0.3131 REMARK 3 20 1.9001 - 1.8679 1.00 3620 140 0.2525 0.2988 REMARK 3 21 1.8679 - 1.8377 1.00 3605 140 0.2675 0.2989 REMARK 3 22 1.8377 - 1.8095 1.00 3692 145 0.2726 0.3525 REMARK 3 23 1.8095 - 1.7829 1.00 3604 145 0.2917 0.3100 REMARK 3 24 1.7829 - 1.7577 0.98 3572 139 0.3094 0.3609 REMARK 3 25 1.7577 - 1.7340 0.93 3386 129 0.3240 0.3342 REMARK 3 26 1.7340 - 1.7115 0.89 3228 123 0.3508 0.3637 REMARK 3 27 1.7115 - 1.6901 0.79 2925 116 0.3532 0.3739 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7373 25.8130 24.2611 REMARK 3 T TENSOR REMARK 3 T11: 0.1851 T22: 0.1688 REMARK 3 T33: 0.1808 T12: -0.0077 REMARK 3 T13: -0.0146 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 1.2358 L22: 1.0831 REMARK 3 L33: 2.5050 L12: 0.1178 REMARK 3 L13: -0.1782 L23: -0.6363 REMARK 3 S TENSOR REMARK 3 S11: 0.0008 S12: -0.0402 S13: 0.0724 REMARK 3 S21: 0.1001 S22: -0.0402 S23: -0.0684 REMARK 3 S31: -0.1417 S32: 0.1930 S33: 0.0422 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 76 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.8982 18.7903 27.9030 REMARK 3 T TENSOR REMARK 3 T11: 0.1409 T22: 0.1616 REMARK 3 T33: 0.1681 T12: 0.0144 REMARK 3 T13: -0.0089 T23: -0.0261 REMARK 3 L TENSOR REMARK 3 L11: 0.5022 L22: 1.0638 REMARK 3 L33: 1.1541 L12: 0.1990 REMARK 3 L13: -0.1603 L23: -0.9100 REMARK 3 S TENSOR REMARK 3 S11: 0.0209 S12: -0.0379 S13: -0.0204 REMARK 3 S21: 0.1037 S22: -0.1084 S23: -0.0584 REMARK 3 S31: -0.0714 S32: 0.0784 S33: 0.1221 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 151 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.7476 15.8369 8.7601 REMARK 3 T TENSOR REMARK 3 T11: 0.2575 T22: 0.2176 REMARK 3 T33: 0.2013 T12: -0.0112 REMARK 3 T13: 0.0024 T23: -0.0308 REMARK 3 L TENSOR REMARK 3 L11: 1.0695 L22: 1.0203 REMARK 3 L33: 2.6948 L12: 0.8690 REMARK 3 L13: -0.8514 L23: -1.5049 REMARK 3 S TENSOR REMARK 3 S11: -0.1506 S12: 0.0961 S13: -0.1805 REMARK 3 S21: -0.4607 S22: 0.0049 S23: -0.1102 REMARK 3 S31: 0.4250 S32: -0.1198 S33: 0.1456 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 189 THROUGH 310 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3133 8.7799 34.8133 REMARK 3 T TENSOR REMARK 3 T11: 0.1934 T22: 0.1790 REMARK 3 T33: 0.2332 T12: 0.0118 REMARK 3 T13: 0.0012 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 0.9146 L22: 0.6925 REMARK 3 L33: 1.4061 L12: 0.5276 REMARK 3 L13: -0.6223 L23: -0.8951 REMARK 3 S TENSOR REMARK 3 S11: 0.0044 S12: -0.0303 S13: -0.0254 REMARK 3 S21: 0.0508 S22: 0.0359 S23: 0.0831 REMARK 3 S31: -0.0397 S32: -0.1476 S33: -0.0350 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 311 THROUGH 378 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.6138 12.9197 17.6705 REMARK 3 T TENSOR REMARK 3 T11: 0.1556 T22: 0.1569 REMARK 3 T33: 0.1405 T12: 0.0188 REMARK 3 T13: -0.0042 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 2.5076 L22: 2.4034 REMARK 3 L33: 1.7182 L12: 0.5349 REMARK 3 L13: 0.0490 L23: 0.1423 REMARK 3 S TENSOR REMARK 3 S11: 0.0420 S12: -0.0715 S13: -0.1008 REMARK 3 S21: 0.1154 S22: -0.0863 S23: 0.0220 REMARK 3 S31: 0.1420 S32: -0.0391 S33: 0.0344 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 379 THROUGH 409 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3794 -1.5116 35.2203 REMARK 3 T TENSOR REMARK 3 T11: 0.2308 T22: 0.2441 REMARK 3 T33: 0.2980 T12: 0.0266 REMARK 3 T13: -0.0117 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 4.1482 L22: 4.9767 REMARK 3 L33: 1.6512 L12: 4.5754 REMARK 3 L13: -2.6357 L23: -2.8968 REMARK 3 S TENSOR REMARK 3 S11: -0.0089 S12: 0.0645 S13: -0.2635 REMARK 3 S21: -0.1189 S22: -0.0577 S23: -0.0498 REMARK 3 S31: -0.0019 S32: -0.0445 S33: 0.0836 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 410 THROUGH 449 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.9330 7.7888 15.9860 REMARK 3 T TENSOR REMARK 3 T11: 0.2920 T22: 0.1887 REMARK 3 T33: 0.2549 T12: 0.0466 REMARK 3 T13: 0.0087 T23: 0.0145 REMARK 3 L TENSOR REMARK 3 L11: 2.1718 L22: 1.6693 REMARK 3 L33: 3.1496 L12: -0.0689 REMARK 3 L13: -1.3152 L23: -1.4336 REMARK 3 S TENSOR REMARK 3 S11: -0.1643 S12: 0.0864 S13: -0.4049 REMARK 3 S21: -0.3023 S22: -0.0712 S23: -0.2141 REMARK 3 S31: 0.7300 S32: 0.2596 S33: 0.1995 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6PVF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1000243043. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 100693 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 48.314 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 1.5500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 200 MM AMMONIUM ACETATE, REMARK 280 100 MM BIS-TRIS PH 5.5, 2% 2,2,2-TRIFLUOROETHANOL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.97500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.65800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.17950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.65800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.97500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.17950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 LEU A 4 REMARK 465 ASP A 449 REMARK 465 VAL A 450 REMARK 465 LYS A 451 REMARK 465 GLU A 452 REMARK 465 PRO A 453 REMARK 465 LEU A 454 REMARK 465 GLN A 455 REMARK 465 ASN A 456 REMARK 465 LYS A 457 REMARK 465 SER A 458 REMARK 465 PRO A 459 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 610 O HOH A 735 2.11 REMARK 500 O HOH A 1042 O HOH A 1047 2.14 REMARK 500 O HOH A 795 O HOH A 892 2.17 REMARK 500 O HOH A 936 O HOH A 946 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 15 57.05 -118.24 REMARK 500 ASP A 47 -122.14 -125.27 REMARK 500 PHE A 219 80.54 -150.17 REMARK 500 ASN A 391 -156.53 -154.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MB5 A 502 DBREF 6PVF A 1 459 UNP L0E4H0 L0E4H0_9EURO 1 459 SEQRES 1 A 459 MET GLY SER LEU GLY GLU GLU VAL GLN VAL ILE ILE VAL SEQRES 2 A 459 GLY LEU GLY ILE VAL GLY LEU ALA ALA ALA ILE GLU CYS SEQRES 3 A 459 ARG GLU LYS GLY HIS SER VAL HIS ALA PHE GLU LYS SER SEQRES 4 A 459 ASN ILE LEU LYS SER ILE GLY ASP CYS ILE GLY LEU GLN SEQRES 5 A 459 SER ASN ALA THR ARG ILE ILE LYS ARG TRP GLY ASP GLY SEQRES 6 A 459 ALA VAL HIS GLU ALA LEU ARG PRO TRP ILE VAL SER SER SEQRES 7 A 459 LYS GLU ILE ARG ILE HIS ASN SER SER GLY ARG LEU ILE SEQRES 8 A 459 ILE ARG GLN ASP LEU SER GLU VAL CYS GLU GLN PRO ASN SEQRES 9 A 459 TYR LEU LEU PRO ARG SER GLU LEU ILE ARG VAL MET TYR SEQRES 10 A 459 GLU HIS ALA LEU LYS ILE GLY VAL GLU ILE SER LEU GLY SEQRES 11 A 459 VAL GLU VAL CYS GLU PRO SER GLU ASP GLU GLU GLY ALA SEQRES 12 A 459 SER VAL VAL ALA LEU THR ARG ASP GLY GLU ARG GLN ILE SEQRES 13 A 459 VAL ARG GLY ASP PHE ILE ILE CYS SER ASP GLY VAL HIS SEQRES 14 A 459 SER LYS MET ARG LYS ALA ILE MET PRO GLN PRO VAL GLU SEQRES 15 A 459 PRO ARG PRO SER GLY TYR ALA ALA PHE ARG ALA LEU VAL SEQRES 16 A 459 ASP THR GLU THR LEU LYS GLY ASP PRO GLU ALA SER TRP SEQRES 17 A 459 VAL PHE GLU GLY VAL GLU GLU ASN ASP ARG PHE ASP VAL SEQRES 18 A 459 PHE PHE LEU SER GLY ALA GLN ILE ALA LEU GLN SER CYS SEQRES 19 A 459 ASN LYS GLY LYS VAL PHE SER TRP PHE CYS ILE HIS GLN SEQRES 20 A 459 ASP THR ARG ASN LEU LEU ASP VAL TRP THR SER PRO ALA SEQRES 21 A 459 ASP PRO ASN GLU MET LEU ASP LEU ILE LYS VAL TRP PRO SEQRES 22 A 459 ILE GLY GLN ARG LEU TRP SER VAL ILE ARG HIS THR GLN SEQRES 23 A 459 PRO GLN LYS PHE ILE ASN TYR PRO LEU LEU ASN HIS LYS SEQRES 24 A 459 PRO LEU ASP HIS TRP VAL SER SER HIS GLY ARG LEU ILE SEQRES 25 A 459 LEU ILE GLY ASP ALA ALA HIS PRO LEU SER PRO ALA ALA SEQRES 26 A 459 GLY GLN GLY ALA SER GLN GLY ILE GLU ASP ALA ASN VAL SEQRES 27 A 459 LEU ALA THR SER LEU SER LEU ALA GLY ARG GLN ARG VAL SEQRES 28 A 459 SER LEU ALA LEU HIS VAL ALA GLU ARG ILE ARG TYR ALA SEQRES 29 A 459 ARG ALA SER ALA VAL GLN LEU ILE SER HIS ARG VAL ASN SEQRES 30 A 459 GLU GLY TRP ARG ASN GLN ASP TRP ASP ALA TYR GLU PRO SEQRES 31 A 459 ASN GLU GLN ASN ILE ALA SER LEU PRO LEU GLU THR TRP SEQRES 32 A 459 ILE TYR GLY HIS ASP SER GLN ALA TYR THR GLU GLN GLU SEQRES 33 A 459 PHE GLU MSE VAL VAL ARG ALA VAL GLN GLU GLY GLU GLU SEQRES 34 A 459 TYR HIS ALA THR ASN LEU PRO ASP LYS LEU ARG VAL GLN SEQRES 35 A 459 LEU GLY ILE ARG ASN VAL ASP VAL LYS GLU PRO LEU GLN SEQRES 36 A 459 ASN LYS SER PRO MODRES 6PVF MSE A 419 MET MODIFIED RESIDUE HET MSE A 419 8 HET FAD A 501 53 HET MB5 A 502 26 HETNAM MSE SELENOMETHIONINE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM MB5 (5AS,12AS,13AS)-9-CHLORO-12,12-DIMETHYL-2,3,11,12,12A, HETNAM 2 MB5 13-HEXAHYDRO-1H,5H,6H-5A,13A-(EPIMINOMETHANO) HETNAM 3 MB5 INDOLIZINO[7,6-B]CARBAZOL-14-ONE HETSYN MB5 MALBRANCHEAMIDE B FORMUL 1 MSE C5 H11 N O2 SE FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 MB5 C21 H24 CL N3 O FORMUL 4 HOH *476(H2 O) HELIX 1 AA1 GLY A 16 LYS A 29 1 14 HELIX 2 AA2 GLN A 52 TRP A 62 1 11 HELIX 3 AA3 GLY A 65 ARG A 72 1 8 HELIX 4 AA4 PRO A 73 ILE A 75 5 3 HELIX 5 AA5 ARG A 109 ILE A 123 1 15 HELIX 6 AA6 LYS A 171 ILE A 176 5 6 HELIX 7 AA7 ASP A 196 LYS A 201 1 6 HELIX 8 AA8 ASP A 203 GLU A 211 5 9 HELIX 9 AA9 ASP A 261 VAL A 271 1 11 HELIX 10 AB1 ILE A 274 ARG A 283 1 10 HELIX 11 AB2 HIS A 284 THR A 285 5 2 HELIX 12 AB3 GLN A 286 PHE A 290 5 5 HELIX 13 AB4 GLY A 315 ALA A 318 5 4 HELIX 14 AB5 GLN A 327 GLY A 347 1 21 HELIX 15 AB6 ARG A 350 GLU A 378 1 29 HELIX 16 AB7 ASN A 391 ILE A 395 5 5 HELIX 17 AB8 SER A 397 LEU A 400 5 4 HELIX 18 AB9 GLU A 401 GLY A 406 1 6 HELIX 19 AC1 ASP A 408 GLY A 427 1 20 HELIX 20 AC2 PRO A 436 LEU A 443 1 8 SHEET 1 AA1 5 GLU A 126 LEU A 129 0 SHEET 2 AA1 5 SER A 32 GLU A 37 1 N ALA A 35 O GLU A 126 SHEET 3 AA1 5 GLN A 9 VAL A 13 1 N VAL A 10 O SER A 32 SHEET 4 AA1 5 PHE A 161 CYS A 164 1 O ILE A 163 N ILE A 11 SHEET 5 AA1 5 LEU A 311 LEU A 313 1 O ILE A 312 N CYS A 164 SHEET 1 AA2 2 CYS A 48 LEU A 51 0 SHEET 2 AA2 2 TYR A 105 PRO A 108 -1 O LEU A 107 N ILE A 49 SHEET 1 AA3 7 LEU A 90 ASP A 95 0 SHEET 2 AA3 7 GLU A 80 HIS A 84 -1 N ILE A 83 O ILE A 91 SHEET 3 AA3 7 PHE A 219 LEU A 224 1 O VAL A 221 N ARG A 82 SHEET 4 AA3 7 ALA A 227 CYS A 234 -1 O LEU A 231 N ASP A 220 SHEET 5 AA3 7 VAL A 239 GLN A 247 -1 O SER A 241 N GLN A 232 SHEET 6 AA3 7 ARG A 184 LEU A 194 -1 N ALA A 189 O HIS A 246 SHEET 7 AA3 7 ILE A 291 ASN A 297 -1 O ASN A 297 N ARG A 184 SHEET 1 AA4 3 VAL A 131 GLU A 138 0 SHEET 2 AA4 3 ALA A 143 THR A 149 -1 O VAL A 146 N CYS A 134 SHEET 3 AA4 3 ARG A 154 GLY A 159 -1 O GLN A 155 N ALA A 147 LINK C GLU A 418 N MSE A 419 1555 1555 1.33 LINK C MSE A 419 N VAL A 420 1555 1555 1.34 SITE 1 AC1 29 GLY A 14 GLY A 16 ILE A 17 VAL A 18 SITE 2 AC1 29 GLU A 37 LYS A 38 ILE A 45 GLY A 46 SITE 3 AC1 29 ASP A 47 CYS A 48 ILE A 49 ARG A 109 SITE 4 AC1 29 VAL A 131 VAL A 133 ASP A 166 GLY A 167 SITE 5 AC1 29 ARG A 192 TRP A 256 GLY A 315 ASP A 316 SITE 6 AC1 29 ALA A 329 HOH A 614 HOH A 633 HOH A 696 SITE 7 AC1 29 HOH A 715 HOH A 716 HOH A 719 HOH A 742 SITE 8 AC1 29 HOH A 744 SITE 1 AC2 9 GLN A 52 VAL A 221 PHE A 243 ALA A 324 SITE 2 AC2 9 GLY A 326 ILE A 395 ALA A 396 PRO A 399 SITE 3 AC2 9 HOH A 879 CRYST1 47.950 82.359 119.316 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020855 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012142 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008381 0.00000