HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 21-JUL-19 6PVY TITLE E.COLI DSBA IN COMPLEX WITH BENZOFURAN COMPOUND 26 ([6-(3- TITLE 2 METHOXYPHENOXY)-1-BENZOFURAN-3-YL]ACETIC ACID) COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL:DISULFIDE INTERCHANGE PROTEIN DSBA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: DSBA, DSF, PPFA, B3860, JW3832; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS INHIBITOR, COMPLEX, DISULFIDE OXIDOREDUCTASE, FRAGMENTS, KEYWDS 2 OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.WANG,B.HERAS REVDAT 4 16-OCT-24 6PVY 1 REMARK REVDAT 3 11-OCT-23 6PVY 1 REMARK REVDAT 2 07-OCT-20 6PVY 1 JRNL REVDAT 1 25-DEC-19 6PVY 0 JRNL AUTH L.F.DUNCAN,G.WANG,O.V.ILYICHOVA,M.J.SCANLON,B.HERAS, JRNL AUTH 2 B.M.ABBOTT JRNL TITL THE FRAGMENT-BASED DEVELOPMENT OF A BENZOFURAN HIT AS A NEW JRNL TITL 2 CLASS OF ESCHERICHIA COLI DSBA INHIBITORS. JRNL REF MOLECULES V. 24 2019 JRNL REFN ESSN 1420-3049 JRNL PMID 31635355 JRNL DOI 10.3390/MOLECULES24203756 REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 45558 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.310 REMARK 3 FREE R VALUE TEST SET COUNT : 2417 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.6367 - 4.4619 0.97 2568 152 0.1667 0.1805 REMARK 3 2 4.4619 - 3.5427 0.98 2543 142 0.1510 0.1855 REMARK 3 3 3.5427 - 3.0952 0.99 2543 160 0.1854 0.2336 REMARK 3 4 3.0952 - 2.8123 0.99 2558 126 0.2059 0.2512 REMARK 3 5 2.8123 - 2.6108 0.99 2521 172 0.2094 0.2573 REMARK 3 6 2.6108 - 2.4570 0.99 2562 129 0.2208 0.2561 REMARK 3 7 2.4570 - 2.3339 0.99 2542 146 0.2143 0.2324 REMARK 3 8 2.3339 - 2.2324 1.00 2559 148 0.2184 0.2605 REMARK 3 9 2.2324 - 2.1464 1.00 2532 170 0.2211 0.2657 REMARK 3 10 2.1464 - 2.0724 1.00 2544 155 0.2205 0.2330 REMARK 3 11 2.0724 - 2.0076 0.99 2520 145 0.2296 0.2802 REMARK 3 12 2.0076 - 1.9502 0.99 2569 114 0.2325 0.2102 REMARK 3 13 1.9502 - 1.8989 0.99 2569 132 0.2401 0.2681 REMARK 3 14 1.8989 - 1.8525 0.99 2538 127 0.2503 0.2914 REMARK 3 15 1.8525 - 1.8104 0.99 2538 149 0.2591 0.3056 REMARK 3 16 1.8104 - 1.7719 0.99 2562 134 0.2715 0.3073 REMARK 3 17 1.7719 - 1.7365 0.93 2373 116 0.3109 0.3511 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2973 REMARK 3 ANGLE : 0.612 4037 REMARK 3 CHIRALITY : 0.041 444 REMARK 3 PLANARITY : 0.004 525 REMARK 3 DIHEDRAL : 9.852 1742 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.7373 -9.6978 0.9308 REMARK 3 T TENSOR REMARK 3 T11: 0.2670 T22: 0.3849 REMARK 3 T33: 0.2953 T12: -0.0936 REMARK 3 T13: -0.0058 T23: -0.0582 REMARK 3 L TENSOR REMARK 3 L11: -0.0423 L22: 5.8586 REMARK 3 L33: 4.9787 L12: -0.5829 REMARK 3 L13: 1.3362 L23: 4.0237 REMARK 3 S TENSOR REMARK 3 S11: 0.0038 S12: 0.3026 S13: -0.0261 REMARK 3 S21: -0.1545 S22: 0.0354 S23: 0.0342 REMARK 3 S31: -0.0565 S32: 0.2996 S33: -0.0251 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.9356 -1.4260 16.9620 REMARK 3 T TENSOR REMARK 3 T11: 0.2037 T22: 0.2178 REMARK 3 T33: 0.2355 T12: -0.0183 REMARK 3 T13: -0.0239 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 3.2168 L22: 2.5323 REMARK 3 L33: 4.9540 L12: 1.1004 REMARK 3 L13: 0.0125 L23: 0.1402 REMARK 3 S TENSOR REMARK 3 S11: -0.1713 S12: 0.1114 S13: 0.0177 REMARK 3 S21: -0.0097 S22: 0.0855 S23: -0.1245 REMARK 3 S31: 0.0639 S32: 0.3262 S33: 0.0800 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 145 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.3800 -13.3044 -3.9271 REMARK 3 T TENSOR REMARK 3 T11: 0.3377 T22: 0.4268 REMARK 3 T33: 0.3590 T12: -0.0055 REMARK 3 T13: -0.0631 T23: -0.0830 REMARK 3 L TENSOR REMARK 3 L11: 2.0650 L22: 3.1285 REMARK 3 L33: 4.8269 L12: 1.0197 REMARK 3 L13: -0.0344 L23: 1.6368 REMARK 3 S TENSOR REMARK 3 S11: 0.0176 S12: 0.2977 S13: 0.0308 REMARK 3 S21: -0.5384 S22: 0.0300 S23: 0.5277 REMARK 3 S31: -0.1260 S32: 0.3780 S33: -0.0374 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6133 -2.3201 21.5995 REMARK 3 T TENSOR REMARK 3 T11: 0.3744 T22: 0.3630 REMARK 3 T33: 0.4534 T12: 0.0869 REMARK 3 T13: 0.0544 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.8190 L22: 4.4334 REMARK 3 L33: 3.7029 L12: 0.4965 REMARK 3 L13: -0.4960 L23: 2.7926 REMARK 3 S TENSOR REMARK 3 S11: 0.3105 S12: 0.1854 S13: 0.4320 REMARK 3 S21: -0.5064 S22: -0.2964 S23: 0.4057 REMARK 3 S31: -0.6496 S32: -0.6911 S33: -0.0267 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 66 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3416 -20.8838 15.0370 REMARK 3 T TENSOR REMARK 3 T11: 0.2297 T22: 0.2746 REMARK 3 T33: 0.2801 T12: -0.0352 REMARK 3 T13: -0.0204 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 3.2016 L22: 6.8095 REMARK 3 L33: 5.1538 L12: -0.2790 REMARK 3 L13: -3.1362 L23: 1.9421 REMARK 3 S TENSOR REMARK 3 S11: 0.0211 S12: -0.0674 S13: -0.4552 REMARK 3 S21: -0.2387 S22: -0.1229 S23: -0.0850 REMARK 3 S31: -0.0211 S32: -0.0044 S33: 0.1285 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 115 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.3995 -27.6826 12.0695 REMARK 3 T TENSOR REMARK 3 T11: 0.3285 T22: 0.4738 REMARK 3 T33: 0.3779 T12: -0.0732 REMARK 3 T13: 0.0062 T23: -0.0277 REMARK 3 L TENSOR REMARK 3 L11: 5.9581 L22: 2.2488 REMARK 3 L33: 2.1129 L12: 2.0777 REMARK 3 L13: 0.4996 L23: 1.5910 REMARK 3 S TENSOR REMARK 3 S11: -0.4323 S12: 0.3803 S13: -0.7361 REMARK 3 S21: -0.5432 S22: -0.1478 S23: 0.3496 REMARK 3 S31: 0.3392 S32: -0.6412 S33: 0.5404 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 129 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9617 -10.0564 8.3642 REMARK 3 T TENSOR REMARK 3 T11: 0.6077 T22: 0.6592 REMARK 3 T33: 0.4696 T12: 0.2372 REMARK 3 T13: -0.1609 T23: 0.1081 REMARK 3 L TENSOR REMARK 3 L11: 2.1249 L22: 9.2328 REMARK 3 L33: 3.2222 L12: 1.1135 REMARK 3 L13: -2.3852 L23: -3.5358 REMARK 3 S TENSOR REMARK 3 S11: 0.0181 S12: 1.0093 S13: 0.2362 REMARK 3 S21: -1.4179 S22: 0.2154 S23: 0.5957 REMARK 3 S31: -0.7069 S32: -1.1030 S33: -0.1465 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 145 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9364 2.3520 16.9027 REMARK 3 T TENSOR REMARK 3 T11: 0.8081 T22: 0.4512 REMARK 3 T33: 0.6440 T12: 0.2132 REMARK 3 T13: 0.1015 T23: 0.0529 REMARK 3 L TENSOR REMARK 3 L11: 6.1266 L22: 4.7303 REMARK 3 L33: 2.0778 L12: 0.6226 REMARK 3 L13: 2.0889 L23: -0.3349 REMARK 3 S TENSOR REMARK 3 S11: 0.4134 S12: -0.1088 S13: 1.3596 REMARK 3 S21: -1.1324 S22: -0.0858 S23: 0.3281 REMARK 3 S31: -1.5574 S32: -0.6723 S33: -0.2372 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 162 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1528 4.1521 29.3427 REMARK 3 T TENSOR REMARK 3 T11: 0.5059 T22: 0.2976 REMARK 3 T33: 0.5325 T12: 0.0614 REMARK 3 T13: 0.1792 T23: -0.0458 REMARK 3 L TENSOR REMARK 3 L11: 4.2098 L22: 5.9389 REMARK 3 L33: 3.3427 L12: 2.4729 REMARK 3 L13: 2.3667 L23: -1.3935 REMARK 3 S TENSOR REMARK 3 S11: 0.1491 S12: 0.0018 S13: 0.5237 REMARK 3 S21: -0.4001 S22: -0.2566 S23: -0.1182 REMARK 3 S31: -0.2336 S32: 0.0134 S33: 0.1080 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6PVY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1000242496. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0-6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95366 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM 7.2.2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.3 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45582 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 48.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.53800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1FVK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11-13% PEG8000, 5-7.5% GLYCEROL, 1 MM REMARK 280 COPPER(II) CHLORIDE, 100 MM SODIUM CACODYLATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.65850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.94750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.65850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.94750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 189 REMARK 465 LYS B 189 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 7 CG CD CE NZ REMARK 470 LYS A 14 CG CD CE NZ REMARK 470 GLN A 21 CG CD OE1 NE2 REMARK 470 LYS A 48 CG CD CE NZ REMARK 470 GLU A 52 CG CD OE1 OE2 REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 GLN A 146 CG CD OE1 NE2 REMARK 470 ARG A 148 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 158 CG CD CE NZ REMARK 470 GLN A 164 CG CD OE1 NE2 REMARK 470 LYS B 14 CG CD CE NZ REMARK 470 LYS B 47 CG CD CE NZ REMARK 470 GLU B 52 CG CD OE1 OE2 REMARK 470 LYS B 55 CG CD CE NZ REMARK 470 ASP B 67 CG OD1 OD2 REMARK 470 LYS B 70 CG CD CE NZ REMARK 470 GLN B 146 CG CD OE1 NE2 REMARK 470 ARG B 148 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 158 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 7 -94.66 -100.20 REMARK 500 LYS A 98 -61.67 -98.78 REMARK 500 LYS B 7 -80.79 -92.01 REMARK 500 PRO B 51 -169.03 -79.92 REMARK 500 LYS B 98 -70.90 -102.76 REMARK 500 SER B 169 -63.07 -96.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 442 DISTANCE = 6.13 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PEG A 203 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 202 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 1 N REMARK 620 2 ALA B 1 O 81.4 REMARK 620 3 GLU B 4 OE2 166.4 98.1 REMARK 620 4 ASP B 44 OD1 103.0 23.2 75.2 REMARK 620 5 ASP B 44 OD2 104.7 23.8 74.4 4.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OZG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU B 202 DBREF 6PVY A 1 189 UNP P0AEG4 DSBA_ECOLI 20 208 DBREF 6PVY B 1 189 UNP P0AEG4 DSBA_ECOLI 20 208 SEQRES 1 A 189 ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU GLU SEQRES 2 A 189 LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE PHE SEQRES 3 A 189 SER PHE PHE CYS PRO HIS CYS TYR GLN PHE GLU GLU VAL SEQRES 4 A 189 LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO GLU SEQRES 5 A 189 GLY VAL LYS MET THR LYS TYR HIS VAL ASN PHE MET GLY SEQRES 6 A 189 GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA VAL SEQRES 7 A 189 ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL PRO SEQRES 8 A 189 LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SER SEQRES 9 A 189 ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY ILE SEQRES 10 A 189 LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE VAL SEQRES 11 A 189 VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA ALA SEQRES 12 A 189 ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL ASN SEQRES 13 A 189 GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SER SEQRES 14 A 189 ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR VAL SEQRES 15 A 189 LYS TYR LEU SER GLU LYS LYS SEQRES 1 B 189 ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU GLU SEQRES 2 B 189 LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE PHE SEQRES 3 B 189 SER PHE PHE CYS PRO HIS CYS TYR GLN PHE GLU GLU VAL SEQRES 4 B 189 LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO GLU SEQRES 5 B 189 GLY VAL LYS MET THR LYS TYR HIS VAL ASN PHE MET GLY SEQRES 6 B 189 GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA VAL SEQRES 7 B 189 ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL PRO SEQRES 8 B 189 LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SER SEQRES 9 B 189 ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY ILE SEQRES 10 B 189 LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE VAL SEQRES 11 B 189 VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA ALA SEQRES 12 B 189 ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL ASN SEQRES 13 B 189 GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SER SEQRES 14 B 189 ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR VAL SEQRES 15 B 189 LYS TYR LEU SER GLU LYS LYS HET OZG A 201 35 HET DMS A 202 10 HET PEG A 203 12 HET DMS B 201 10 HET CU B 202 1 HETNAM OZG [6-(3-METHOXYPHENOXY)-1-BENZOFURAN-3-YL]ACETIC ACID HETNAM DMS DIMETHYL SULFOXIDE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM CU COPPER (II) ION FORMUL 3 OZG C17 H14 O5 FORMUL 4 DMS 2(C2 H6 O S) FORMUL 5 PEG C4 H10 O3 FORMUL 7 CU CU 2+ FORMUL 8 HOH *264(H2 O) HELIX 1 AA1 CYS A 30 VAL A 39 1 10 HELIX 2 AA2 HIS A 41 LYS A 48 1 8 HELIX 3 AA3 GLY A 65 GLY A 83 1 19 HELIX 4 AA4 VAL A 84 LYS A 98 1 15 HELIX 5 AA5 SER A 104 ALA A 115 1 12 HELIX 6 AA6 LYS A 118 ASN A 127 1 10 HELIX 7 AA7 SER A 128 VAL A 145 1 18 HELIX 8 AA8 PRO A 163 MET A 166 5 4 HELIX 9 AA9 ASN A 170 GLU A 187 1 18 HELIX 10 AB1 CYS B 30 VAL B 39 1 10 HELIX 11 AB2 HIS B 41 LEU B 50 1 10 HELIX 12 AB3 GLY B 65 GLY B 83 1 19 HELIX 13 AB4 VAL B 84 LYS B 98 1 15 HELIX 14 AB5 SER B 104 ALA B 115 1 12 HELIX 15 AB6 LYS B 118 ASN B 127 1 10 HELIX 16 AB7 SER B 128 VAL B 145 1 18 HELIX 17 AB8 PRO B 163 MET B 166 5 4 HELIX 18 AB9 ASN B 170 GLU B 187 1 18 SHEET 1 AA1 5 TYR A 9 THR A 11 0 SHEET 2 AA1 5 TYR A 159 LEU A 161 -1 O GLN A 160 N THR A 10 SHEET 3 AA1 5 ALA A 152 VAL A 155 -1 N VAL A 155 O TYR A 159 SHEET 4 AA1 5 VAL A 22 PHE A 26 -1 N PHE A 25 O ALA A 152 SHEET 5 AA1 5 MET A 56 HIS A 60 1 O THR A 57 N GLU A 24 SHEET 1 AA2 5 TYR B 9 THR B 11 0 SHEET 2 AA2 5 TYR B 159 LEU B 161 -1 O GLN B 160 N THR B 10 SHEET 3 AA2 5 ALA B 152 VAL B 155 -1 N MET B 153 O LEU B 161 SHEET 4 AA2 5 VAL B 22 PHE B 26 -1 N LEU B 23 O PHE B 154 SHEET 5 AA2 5 MET B 56 HIS B 60 1 O THR B 57 N GLU B 24 SSBOND 1 CYS A 30 CYS A 33 1555 1555 2.05 SSBOND 2 CYS B 30 CYS B 33 1555 1555 2.05 LINK N ALA B 1 CU CU B 202 1555 1555 2.20 LINK O ALA B 1 CU CU B 202 1555 1555 2.05 LINK OE2 GLU B 4 CU CU B 202 1555 1555 2.08 LINK OD1 ASP B 44 CU CU B 202 1555 4546 2.31 LINK OD2 ASP B 44 CU CU B 202 1555 4546 2.27 CISPEP 1 VAL A 150 PRO A 151 0 -3.28 CISPEP 2 VAL B 150 PRO B 151 0 -2.67 SITE 1 AC1 8 HIS A 32 GLN A 35 LEU A 40 VAL A 150 SITE 2 AC1 8 PRO A 151 THR A 168 PHE B 29 GLY B 65 SITE 1 AC2 5 LYS A 118 GLY A 119 HOH A 301 HOH A 403 SITE 2 AC2 5 HOH A 413 SITE 1 AC3 3 ARG A 103 SER A 104 ASP A 107 SITE 1 AC4 2 LEU B 82 ASN B 170 SITE 1 AC5 4 ALA B 1 GLU B 4 ASP B 44 HOH B 384 CRYST1 117.317 63.895 74.461 90.00 125.84 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008524 0.000000 0.006156 0.00000 SCALE2 0.000000 0.015651 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016566 0.00000