HEADER SIGNALING PROTEIN 23-JUL-19 6PWJ TITLE VIBRIO CHOLERAE LAPD S HELIX-GGDEF-EAL (APO) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GGDEF AND EAL DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE O1 STR. 2010EL-1786; SOURCE 3 ORGANISM_TAXID: 914149; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BIOFILM FORMATION, CELL ADHESION, C-DI-GMP SIGNALING, RECEPTOR, KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.M.GIGLIO,R.B.COOLEY,H.SONDERMANN REVDAT 4 13-MAR-24 6PWJ 1 LINK REVDAT 3 22-APR-20 6PWJ 1 JRNL REVDAT 2 27-NOV-19 6PWJ 1 REMARK REVDAT 1 09-OCT-19 6PWJ 0 JRNL AUTH G.KITTS,K.M.GIGLIO,D.ZAMORANO-SANCHEZ,J.H.PARK,L.TOWNSLEY, JRNL AUTH 2 R.B.COOLEY,B.R.WUCHER,K.E.KLOSE,C.D.NADELL,F.H.YILDIZ, JRNL AUTH 3 H.SONDERMANN JRNL TITL A CONSERVED REGULATORY CIRCUIT CONTROLS LARGE ADHESINS IN JRNL TITL 2 VIBRIO CHOLERAE. JRNL REF MBIO V. 10 2019 JRNL REFN ESSN 2150-7511 JRNL PMID 31796544 JRNL DOI 10.1128/MBIO.02822-19 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 3 NUMBER OF REFLECTIONS : 28845 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.840 REMARK 3 FREE R VALUE TEST SET COUNT : 1974 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 12.6900 - 6.2600 0.92 1964 142 0.1732 0.2192 REMARK 3 2 6.2600 - 5.0700 0.92 1925 137 0.1937 0.2231 REMARK 3 3 5.0700 - 4.4600 0.93 1915 142 0.1650 0.1960 REMARK 3 4 4.4600 - 4.0700 0.94 1917 138 0.1654 0.2050 REMARK 3 5 4.0700 - 3.7800 0.94 1927 142 0.1811 0.2554 REMARK 3 6 3.7800 - 3.5700 0.94 1921 140 0.1950 0.2458 REMARK 3 7 3.5700 - 3.3900 0.94 1911 139 0.2114 0.2223 REMARK 3 8 3.3900 - 3.2500 0.95 1930 146 0.2201 0.2685 REMARK 3 9 3.2500 - 3.1200 0.95 1904 138 0.2308 0.2611 REMARK 3 10 3.1200 - 3.0200 0.94 1912 142 0.2465 0.2983 REMARK 3 11 3.0200 - 2.9200 0.95 1914 145 0.2437 0.2930 REMARK 3 12 2.9200 - 2.8400 0.95 1907 142 0.2526 0.2821 REMARK 3 13 2.8400 - 2.7700 0.95 1926 141 0.2558 0.3481 REMARK 3 14 2.7700 - 2.7000 0.95 1898 140 0.2501 0.2937 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.316 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.782 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.001 6627 REMARK 3 ANGLE : 0.366 8961 REMARK 3 CHIRALITY : 0.039 994 REMARK 3 PLANARITY : 0.003 1159 REMARK 3 DIHEDRAL : 13.427 3926 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 221:636 REMARK 3 ORIGIN FOR THE GROUP (A): 53.7192 -47.4094 5.5551 REMARK 3 T TENSOR REMARK 3 T11: 0.2760 T22: 0.3072 REMARK 3 T33: 0.2925 T12: -0.0626 REMARK 3 T13: 0.0611 T23: 0.0354 REMARK 3 L TENSOR REMARK 3 L11: 3.2749 L22: 1.0506 REMARK 3 L33: 1.2032 L12: -0.4916 REMARK 3 L13: -0.3269 L23: -0.0219 REMARK 3 S TENSOR REMARK 3 S11: 0.2251 S12: 0.2531 S13: 0.3875 REMARK 3 S21: -0.0982 S22: -0.0512 S23: -0.0148 REMARK 3 S31: -0.0220 S32: -0.1173 S33: -0.1408 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B AND RESID 221:636 REMARK 3 ORIGIN FOR THE GROUP (A): 34.1618 -73.4984 14.0054 REMARK 3 T TENSOR REMARK 3 T11: 0.3196 T22: 0.4020 REMARK 3 T33: 0.4311 T12: -0.0466 REMARK 3 T13: 0.0052 T23: -0.1112 REMARK 3 L TENSOR REMARK 3 L11: 2.3250 L22: 1.4360 REMARK 3 L33: 1.1672 L12: -0.7771 REMARK 3 L13: 0.1601 L23: 0.0545 REMARK 3 S TENSOR REMARK 3 S11: 0.1462 S12: 0.3855 S13: -0.4971 REMARK 3 S21: -0.1315 S22: 0.0225 S23: -0.0056 REMARK 3 S31: 0.2332 S32: 0.0908 S33: -0.1774 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6PWJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1000243199. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.6309 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.8 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29068 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 19.534 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.41400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.5 M SODIUM ACETATE TRIHYDRATE, PH REMARK 280 7.0 15% GLYCEROL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.29400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.14700 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 38.14700 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 76.29400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 345 REMARK 465 ASP A 346 REMARK 465 PRO A 347 REMARK 465 THR A 348 REMARK 465 GLY A 349 REMARK 465 MET A 350 REMARK 465 ALA A 351 REMARK 465 LYS A 352 REMARK 465 THR A 397 REMARK 465 ASP A 398 REMARK 465 PRO B 345 REMARK 465 ASP B 346 REMARK 465 PRO B 347 REMARK 465 THR B 348 REMARK 465 GLY B 349 REMARK 465 MET B 350 REMARK 465 ALA B 351 REMARK 465 LYS B 352 REMARK 465 THR B 397 REMARK 465 ASP B 398 REMARK 465 ALA B 637 REMARK 465 ALA B 638 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 444 CG CD OE1 OE2 REMARK 470 LYS A 445 CG CD CE NZ REMARK 470 VAL A 448 CG1 CG2 REMARK 470 LYS B 221 CG CD CE NZ REMARK 470 LYS B 224 CG CD CE NZ REMARK 470 ILE B 304 CG1 CG2 CD1 REMARK 470 GLU B 387 CG CD OE1 OE2 REMARK 470 LEU B 388 CG CD1 CD2 REMARK 470 LYS B 399 CG CD CE NZ REMARK 470 LYS B 404 CG CD CE NZ REMARK 470 VAL B 448 CG1 CG2 REMARK 470 GLU B 484 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 636 OD2 ASP B 585 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 262 -53.72 -134.53 REMARK 500 PRO A 386 22.53 -78.78 REMARK 500 ASN A 463 -8.36 77.72 REMARK 500 HIS A 514 39.65 -143.69 REMARK 500 HIS B 244 19.19 59.26 REMARK 500 SER B 262 -60.98 -144.07 REMARK 500 HIS B 514 43.38 -144.98 REMARK 500 GLN B 561 -136.08 -127.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1000 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 438 OE2 REMARK 620 2 ASN A 492 OD1 96.3 REMARK 620 3 GLU A 524 OE1 86.3 84.1 REMARK 620 4 ASP A 554 OD2 175.1 85.6 89.5 REMARK 620 5 HOH A1102 O 97.1 166.3 94.0 80.8 REMARK 620 6 HOH A1105 O 95.1 112.9 162.6 88.2 68.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 701 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 438 OE2 REMARK 620 2 ASN B 492 OD1 94.0 REMARK 620 3 GLU B 524 OE1 80.1 83.6 REMARK 620 4 ASP B 554 OD2 160.7 92.6 82.6 REMARK 620 5 HOH B 802 O 94.4 169.5 104.1 81.5 REMARK 620 6 HOH B 805 O 93.0 97.6 173.1 104.1 75.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE B 702 DBREF1 6PWJ A 221 636 UNP A0A0H6T0A6_VIBCL DBREF2 6PWJ A A0A0H6T0A6 119 534 DBREF1 6PWJ B 221 636 UNP A0A0H6T0A6_VIBCL DBREF2 6PWJ B A0A0H6T0A6 119 534 SEQADV 6PWJ ALA A 637 UNP A0A0H6T0A EXPRESSION TAG SEQADV 6PWJ ALA A 638 UNP A0A0H6T0A EXPRESSION TAG SEQADV 6PWJ ALA B 637 UNP A0A0H6T0A EXPRESSION TAG SEQADV 6PWJ ALA B 638 UNP A0A0H6T0A EXPRESSION TAG SEQRES 1 A 418 LYS ALA PHE LYS ALA GLN ALA LYS GLU ALA GLN GLN LEU SEQRES 2 A 418 ARG GLU ARG ALA TYR LEU ASP PRO VAL SER HIS LEU GLY SEQRES 3 A 418 ASN ARG ALA TYR TYR MET SER GLN LEU SER GLY TRP LEU SEQRES 4 A 418 SER GLU SER GLY ILE GLY GLY VAL ALA ILE LEU GLN ALA SEQRES 5 A 418 GLU PHE ILE LYS GLU LEU TYR GLU GLU LYS GLY TYR GLU SEQRES 6 A 418 ALA GLY ASP GLY MET VAL ARG GLU LEU ALA ASP ARG LEU SEQRES 7 A 418 LYS ASN SER ILE THR ILE LYS ASP ILE SER ILE ALA ARG SEQRES 8 A 418 ILE SER THR TYR GLU PHE GLY ILE ILE MET PRO ASN MET SEQRES 9 A 418 ASP GLU THR GLU LEU LYS ILE VAL ALA GLU SER ILE ILE SEQRES 10 A 418 THR CYS VAL ASP ASP ILE ASN PRO ASP PRO THR GLY MET SEQRES 11 A 418 ALA LYS ALA ASN LEU SER LEU GLY VAL VAL SER ASN LYS SEQRES 12 A 418 ARG GLN SER SER THR THR THR LEU LEU SER LEU LEU ASP SEQRES 13 A 418 ASN ALA LEU ALA LYS ALA LYS SER ASN PRO GLU LEU ASN SEQRES 14 A 418 TYR GLY PHE ILE SER SER ASP THR ASP LYS ILE ILE LEU SEQRES 15 A 418 GLY LYS GLN GLN TRP LYS THR LEU VAL GLU GLU ALA ILE SEQRES 16 A 418 HIS ASN ASP TRP PHE THR PHE ARG TYR GLN ALA ALA ASN SEQRES 17 A 418 SER SER TRP GLY LYS THR PHE HIS ARG GLU VAL PHE SER SEQRES 18 A 418 ALA PHE GLU LYS ASP GLY VAL ARG TYR THR ALA ASN GLN SEQRES 19 A 418 PHE LEU PHE ALA LEU GLU GLN LEU ASN ALA SER HIS ILE SEQRES 20 A 418 PHE ASP GLN TYR VAL ILE GLU ARG VAL ILE GLN GLN LEU SEQRES 21 A 418 GLU LYS GLY GLU LEU THR ASP PRO LEU ALA ILE ASN ILE SEQRES 22 A 418 ALA GLN GLY SER ILE SER GLN PRO SER PHE ILE ARG TRP SEQRES 23 A 418 ILE SER GLN THR LEU SER LYS HIS LEU SER VAL ALA ASN SEQRES 24 A 418 LEU LEU HIS PHE GLU ILE PRO GLU GLY CYS PHE VAL ASN SEQRES 25 A 418 GLU PRO HIS TYR THR ALA LEU PHE CYS ASN ALA VAL ARG SEQRES 26 A 418 ASN ALA GLY ALA ASP PHE GLY VAL ASP ASN TYR GLY ARG SEQRES 27 A 418 ASN PHE GLN SER LEU ASP TYR ILE ASN GLU PHE ARG PRO SEQRES 28 A 418 LYS TYR VAL LYS LEU ASP TYR LEU PHE THR HIS HIS LEU SEQRES 29 A 418 ASP ASP GLU ARG GLN LYS PHE THR LEU THR SER ILE SER SEQRES 30 A 418 ARG THR ALA HIS ASN LEU GLY ILE THR THR ILE ALA SER SEQRES 31 A 418 ARG VAL GLU THR GLN THR GLN LEU ASP PHE LEU SER GLU SEQRES 32 A 418 HIS PHE ILE GLU VAL PHE GLN GLY PHE ILE VAL ASP LYS SEQRES 33 A 418 ALA ALA SEQRES 1 B 418 LYS ALA PHE LYS ALA GLN ALA LYS GLU ALA GLN GLN LEU SEQRES 2 B 418 ARG GLU ARG ALA TYR LEU ASP PRO VAL SER HIS LEU GLY SEQRES 3 B 418 ASN ARG ALA TYR TYR MET SER GLN LEU SER GLY TRP LEU SEQRES 4 B 418 SER GLU SER GLY ILE GLY GLY VAL ALA ILE LEU GLN ALA SEQRES 5 B 418 GLU PHE ILE LYS GLU LEU TYR GLU GLU LYS GLY TYR GLU SEQRES 6 B 418 ALA GLY ASP GLY MET VAL ARG GLU LEU ALA ASP ARG LEU SEQRES 7 B 418 LYS ASN SER ILE THR ILE LYS ASP ILE SER ILE ALA ARG SEQRES 8 B 418 ILE SER THR TYR GLU PHE GLY ILE ILE MET PRO ASN MET SEQRES 9 B 418 ASP GLU THR GLU LEU LYS ILE VAL ALA GLU SER ILE ILE SEQRES 10 B 418 THR CYS VAL ASP ASP ILE ASN PRO ASP PRO THR GLY MET SEQRES 11 B 418 ALA LYS ALA ASN LEU SER LEU GLY VAL VAL SER ASN LYS SEQRES 12 B 418 ARG GLN SER SER THR THR THR LEU LEU SER LEU LEU ASP SEQRES 13 B 418 ASN ALA LEU ALA LYS ALA LYS SER ASN PRO GLU LEU ASN SEQRES 14 B 418 TYR GLY PHE ILE SER SER ASP THR ASP LYS ILE ILE LEU SEQRES 15 B 418 GLY LYS GLN GLN TRP LYS THR LEU VAL GLU GLU ALA ILE SEQRES 16 B 418 HIS ASN ASP TRP PHE THR PHE ARG TYR GLN ALA ALA ASN SEQRES 17 B 418 SER SER TRP GLY LYS THR PHE HIS ARG GLU VAL PHE SER SEQRES 18 B 418 ALA PHE GLU LYS ASP GLY VAL ARG TYR THR ALA ASN GLN SEQRES 19 B 418 PHE LEU PHE ALA LEU GLU GLN LEU ASN ALA SER HIS ILE SEQRES 20 B 418 PHE ASP GLN TYR VAL ILE GLU ARG VAL ILE GLN GLN LEU SEQRES 21 B 418 GLU LYS GLY GLU LEU THR ASP PRO LEU ALA ILE ASN ILE SEQRES 22 B 418 ALA GLN GLY SER ILE SER GLN PRO SER PHE ILE ARG TRP SEQRES 23 B 418 ILE SER GLN THR LEU SER LYS HIS LEU SER VAL ALA ASN SEQRES 24 B 418 LEU LEU HIS PHE GLU ILE PRO GLU GLY CYS PHE VAL ASN SEQRES 25 B 418 GLU PRO HIS TYR THR ALA LEU PHE CYS ASN ALA VAL ARG SEQRES 26 B 418 ASN ALA GLY ALA ASP PHE GLY VAL ASP ASN TYR GLY ARG SEQRES 27 B 418 ASN PHE GLN SER LEU ASP TYR ILE ASN GLU PHE ARG PRO SEQRES 28 B 418 LYS TYR VAL LYS LEU ASP TYR LEU PHE THR HIS HIS LEU SEQRES 29 B 418 ASP ASP GLU ARG GLN LYS PHE THR LEU THR SER ILE SER SEQRES 30 B 418 ARG THR ALA HIS ASN LEU GLY ILE THR THR ILE ALA SER SEQRES 31 B 418 ARG VAL GLU THR GLN THR GLN LEU ASP PHE LEU SER GLU SEQRES 32 B 418 HIS PHE ILE GLU VAL PHE GLN GLY PHE ILE VAL ASP LYS SEQRES 33 B 418 ALA ALA HET MG A1000 1 HET MG B 701 1 HET PGE B 702 24 HETNAM MG MAGNESIUM ION HETNAM PGE TRIETHYLENE GLYCOL FORMUL 3 MG 2(MG 2+) FORMUL 5 PGE C6 H14 O4 FORMUL 6 HOH *11(H2 O) HELIX 1 AA1 ALA A 222 LEU A 239 1 18 HELIX 2 AA2 ASN A 247 SER A 262 1 16 HELIX 3 AA3 ALA A 272 LYS A 282 1 11 HELIX 4 AA4 GLY A 283 ILE A 302 1 20 HELIX 5 AA5 ASP A 325 ASP A 342 1 18 HELIX 6 AA6 SER A 367 ASN A 385 1 19 HELIX 7 AA7 GLY A 403 ASP A 418 1 16 HELIX 8 AA8 PHE A 455 LEU A 462 1 8 HELIX 9 AA9 ALA A 464 LYS A 482 1 19 HELIX 10 AB1 ALA A 494 SER A 499 1 6 HELIX 11 AB2 GLN A 500 LYS A 513 1 14 HELIX 12 AB3 VAL A 517 ASN A 519 5 3 HELIX 13 AB4 GLU A 527 GLU A 533 1 7 HELIX 14 AB5 GLU A 533 ASN A 546 1 14 HELIX 15 AB6 ASP A 564 ARG A 570 1 7 HELIX 16 AB7 TYR A 578 THR A 581 5 4 HELIX 17 AB8 ASP A 586 ASN A 602 1 17 HELIX 18 AB9 THR A 614 GLU A 623 1 10 HELIX 19 AC1 GLY A 631 LYS A 636 1 6 HELIX 20 AC2 ALA B 222 LEU B 239 1 18 HELIX 21 AC3 ASN B 247 SER B 262 1 16 HELIX 22 AC4 ALA B 272 GLY B 283 1 12 HELIX 23 AC5 GLY B 283 SER B 301 1 19 HELIX 24 AC6 ASP B 325 ASP B 342 1 18 HELIX 25 AC7 SER B 367 ASN B 385 1 19 HELIX 26 AC8 GLY B 403 ASP B 418 1 16 HELIX 27 AC9 ALA B 452 LEU B 462 1 11 HELIX 28 AD1 ALA B 464 LYS B 482 1 19 HELIX 29 AD2 ALA B 494 SER B 499 1 6 HELIX 30 AD3 GLN B 500 LYS B 513 1 14 HELIX 31 AD4 HIS B 514 ASN B 519 5 6 HELIX 32 AD5 GLU B 527 GLU B 533 1 7 HELIX 33 AD6 GLU B 533 ALA B 547 1 15 HELIX 34 AD7 ASP B 564 ARG B 570 1 7 HELIX 35 AD8 ASP B 577 HIS B 582 1 6 HELIX 36 AD9 ASP B 586 ASN B 602 1 17 HELIX 37 AE1 THR B 614 HIS B 624 1 11 SHEET 1 AA1 5 SER A 308 ARG A 311 0 SHEET 2 AA1 5 GLU A 316 PRO A 322 -1 O GLY A 318 N ALA A 310 SHEET 3 AA1 5 GLY A 265 GLN A 271 -1 N GLY A 266 O MET A 321 SHEET 4 AA1 5 SER A 356 ASN A 362 -1 O ASN A 362 N GLY A 265 SHEET 5 AA1 5 GLY A 391 SER A 395 1 O GLY A 391 N VAL A 359 SHEET 1 AA210 VAL A 448 THR A 451 0 SHEET 2 AA210 THR A 434 LYS A 445 -1 N PHE A 443 O TYR A 450 SHEET 3 AA210 LEU A 489 ASN A 492 1 O ALA A 490 N VAL A 439 SHEET 4 AA210 LEU A 521 PRO A 526 1 O GLU A 524 N ILE A 491 SHEET 5 AA210 ASP A 550 TYR A 556 1 O ASP A 554 N ILE A 525 SHEET 6 AA210 TYR A 573 LEU A 576 1 O LYS A 575 N VAL A 553 SHEET 7 AA210 THR A 606 ALA A 609 1 O ILE A 608 N VAL A 574 SHEET 8 AA210 VAL A 628 GLN A 630 1 O VAL A 628 N ALA A 609 SHEET 9 AA210 PHE A 420 SER A 429 -1 N ASN A 428 O PHE A 629 SHEET 10 AA210 THR A 434 LYS A 445 -1 O ALA A 442 N THR A 421 SHEET 1 AA3 5 SER B 308 ARG B 311 0 SHEET 2 AA3 5 GLU B 316 PRO B 322 -1 O GLY B 318 N ALA B 310 SHEET 3 AA3 5 ILE B 264 GLN B 271 -1 N LEU B 270 O PHE B 317 SHEET 4 AA3 5 SER B 356 LYS B 363 -1 O ASN B 362 N GLY B 265 SHEET 5 AA3 5 GLY B 391 SER B 394 1 O GLY B 391 N VAL B 359 SHEET 1 AA410 VAL B 448 THR B 451 0 SHEET 2 AA410 THR B 434 LYS B 445 -1 N PHE B 443 O TYR B 450 SHEET 3 AA410 LEU B 489 ASN B 492 1 O ALA B 490 N VAL B 439 SHEET 4 AA410 LEU B 521 PRO B 526 1 O HIS B 522 N LEU B 489 SHEET 5 AA410 ASP B 550 TYR B 556 1 O ASP B 554 N ILE B 525 SHEET 6 AA410 TYR B 573 LEU B 576 1 O LYS B 575 N VAL B 553 SHEET 7 AA410 THR B 606 ALA B 609 1 O THR B 606 N VAL B 574 SHEET 8 AA410 VAL B 628 PHE B 629 1 O VAL B 628 N ALA B 609 SHEET 9 AA410 PHE B 420 SER B 429 -1 N ASN B 428 O PHE B 629 SHEET 10 AA410 THR B 434 LYS B 445 -1 O HIS B 436 N ALA B 427 LINK OE2 GLU A 438 MG MG A1000 1555 1555 1.97 LINK OD1 ASN A 492 MG MG A1000 1555 1555 2.06 LINK OE1 GLU A 524 MG MG A1000 1555 1555 2.06 LINK OD2 ASP A 554 MG MG A1000 1555 1555 2.10 LINK MG MG A1000 O HOH A1102 1555 1555 2.06 LINK MG MG A1000 O HOH A1105 1555 1555 2.04 LINK OE2 GLU B 438 MG MG B 701 1555 1555 2.14 LINK OD1 ASN B 492 MG MG B 701 1555 1555 2.00 LINK OE1 GLU B 524 MG MG B 701 1555 1555 2.24 LINK OD2 ASP B 554 MG MG B 701 1555 1555 2.03 LINK MG MG B 701 O HOH B 802 1555 1555 2.15 LINK MG MG B 701 O HOH B 805 1555 1555 2.09 CISPEP 1 SER A 395 ASP A 396 0 1.05 SITE 1 AC1 6 GLU A 438 ASN A 492 GLU A 524 ASP A 554 SITE 2 AC1 6 HOH A1102 HOH A1105 SITE 1 AC2 6 GLU B 438 ASN B 492 GLU B 524 ASP B 554 SITE 2 AC2 6 HOH B 802 HOH B 805 SITE 1 AC3 3 ARG B 598 GLU B 623 HIS B 624 CRYST1 129.830 129.830 114.441 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007702 0.004447 0.000000 0.00000 SCALE2 0.000000 0.008894 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008738 0.00000