HEADER VIRAL PROTEIN 24-JUL-19 6PX4 TITLE CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN PERIPLASMIC DOMAINS OF TITLE 2 ANTIHOLIN RI AND HOLIN T FROM T4 PHAGE, IN H32 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIHOLIN; COMPND 3 CHAIN: R, A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HOLIN; COMPND 7 CHAIN: T, B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA PHAGE ECML-134; SOURCE 3 ORGANISM_TAXID: 1204522; SOURCE 4 GENE: ECML134_104; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: ESCHERICHIA PHAGE VB_ECOM_NBG2; SOURCE 9 ORGANISM_TAXID: 2184699; SOURCE 10 GENE: VBECOMNBG2_239; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHAGE, LYSIS INHIBITION, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.V.KRIEGER,J.C.SACCHETTINI REVDAT 3 12-AUG-20 6PX4 1 JRNL REVDAT 2 01-JUL-20 6PX4 1 JRNL REVDAT 1 24-JUN-20 6PX4 0 JRNL AUTH I.V.KRIEGER,V.KUZNETSOV,J.Y.CHANG,J.ZHANG,S.H.MOUSSA, JRNL AUTH 2 R.F.YOUNG,J.C.SACCHETTINI JRNL TITL THE STRUCTURAL BASIS OF T4 PHAGE LYSIS CONTROL: DNA AS THE JRNL TITL 2 SIGNAL FOR LYSIS INHIBITION. JRNL REF J.MOL.BIOL. V. 432 4623 2020 JRNL REFN ESSN 1089-8638 JRNL PMID 32562709 JRNL DOI 10.1016/J.JMB.2020.06.013 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 68088 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 3429 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.6000 - 4.7553 0.99 2905 158 0.1575 0.1719 REMARK 3 2 4.7553 - 3.7760 0.99 2822 147 0.1467 0.1651 REMARK 3 3 3.7760 - 3.2992 1.00 2820 144 0.1785 0.2185 REMARK 3 4 3.2992 - 2.9977 0.99 2775 151 0.1939 0.2249 REMARK 3 5 2.9977 - 2.7830 1.00 2761 163 0.1986 0.2377 REMARK 3 6 2.7830 - 2.6190 1.00 2776 166 0.2082 0.2561 REMARK 3 7 2.6190 - 2.4879 1.00 2759 145 0.2077 0.2754 REMARK 3 8 2.4879 - 2.3796 1.00 2768 143 0.2133 0.2300 REMARK 3 9 2.3796 - 2.2880 1.00 2748 164 0.2051 0.2477 REMARK 3 10 2.2880 - 2.2091 0.99 2737 165 0.2132 0.2365 REMARK 3 11 2.2091 - 2.1400 1.00 2784 133 0.2032 0.2190 REMARK 3 12 2.1400 - 2.0788 1.00 2746 128 0.2072 0.2355 REMARK 3 13 2.0788 - 2.0241 0.99 2754 144 0.2174 0.2448 REMARK 3 14 2.0241 - 1.9747 0.99 2745 137 0.2093 0.2100 REMARK 3 15 1.9747 - 1.9299 0.99 2745 132 0.2155 0.2740 REMARK 3 16 1.9299 - 1.8888 0.99 2731 170 0.2275 0.2519 REMARK 3 17 1.8888 - 1.8510 0.99 2739 133 0.2216 0.2770 REMARK 3 18 1.8510 - 1.8161 0.99 2750 131 0.2214 0.2530 REMARK 3 19 1.8161 - 1.7837 0.99 2723 138 0.2312 0.2795 REMARK 3 20 1.7837 - 1.7534 0.98 2703 143 0.2346 0.2543 REMARK 3 21 1.7534 - 1.7251 0.94 2588 136 0.2498 0.3216 REMARK 3 22 1.7251 - 1.6986 0.87 2383 134 0.2486 0.3149 REMARK 3 23 1.6986 - 1.6736 0.82 2255 120 0.2630 0.3245 REMARK 3 24 1.6736 - 1.6500 0.77 2142 104 0.2834 0.2692 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3660 REMARK 3 ANGLE : 0.875 4961 REMARK 3 CHIRALITY : 0.049 513 REMARK 3 PLANARITY : 0.006 643 REMARK 3 DIHEDRAL : 7.140 2899 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6PX4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1000243044. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SAINT REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68307 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 99.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 7.290 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.33820 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8 M NA/K TARTRATE, PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 58.27300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 33.64393 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 74.46133 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 58.27300 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 33.64393 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 74.46133 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 58.27300 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 33.64393 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 74.46133 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 58.27300 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 33.64393 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 74.46133 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 58.27300 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 33.64393 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 74.46133 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 58.27300 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 33.64393 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 74.46133 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 67.28786 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 148.92267 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 67.28786 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 148.92267 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 67.28786 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 148.92267 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 67.28786 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 148.92267 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 67.28786 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 148.92267 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 67.28786 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 148.92267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 24-MERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 24-MERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 43840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 103790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -203.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: R, T, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH T 304 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 151 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 353 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR R 96 REMARK 465 GLU R 97 REMARK 465 THR A 96 REMARK 465 GLU A 97 REMARK 465 ARG B 77 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS T 207 CB CYS T 207 SG -0.096 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR T 166 C - N - CA ANGL. DEV. = 15.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN R 25 31.40 -87.93 REMARK 500 VAL R 41 -59.78 -129.64 REMARK 500 ASP R 67 78.22 -156.91 REMARK 500 SER T 155 -13.95 -146.64 REMARK 500 THR T 166 68.53 -118.57 REMARK 500 ASN A 25 33.05 -78.04 REMARK 500 VAL A 41 -55.99 -131.33 REMARK 500 ASP A 67 75.74 -155.44 REMARK 500 SER A 70 18.19 -143.08 REMARK 500 ASN B 107 -25.86 77.97 REMARK 500 SER B 155 -19.10 -142.97 REMARK 500 THR B 166 71.01 53.49 REMARK 500 REMARK 500 REMARK: NULL DBREF 6PX4 R 25 97 UNP I7AU04 I7AU04_9CAUD 25 97 DBREF1 6PX4 T 77 218 UNP A0A2U8QQK7_9CAUD DBREF2 6PX4 T A0A2U8QQK7 77 218 DBREF 6PX4 A 25 97 UNP I7AU04 I7AU04_9CAUD 25 97 DBREF1 6PX4 B 77 218 UNP A0A2U8QQK7_9CAUD DBREF2 6PX4 B A0A2U8QQK7 77 218 SEQADV 6PX4 MET R 24 UNP I7AU04 INITIATING METHIONINE SEQADV 6PX4 MET A 24 UNP I7AU04 INITIATING METHIONINE SEQRES 1 R 74 MET ASN VAL ASP PRO HIS PHE ASP LYS PHE MET GLU SER SEQRES 2 R 74 GLY ILE ARG HIS VAL TYR MET LEU PHE GLU ASN LYS SER SEQRES 3 R 74 VAL GLU SER SER GLU GLN PHE TYR SER PHE MET ARG THR SEQRES 4 R 74 THR TYR LYS ASN ASP PRO CYS SER SER ASP PHE GLU CYS SEQRES 5 R 74 ILE GLU ARG GLY ALA GLU MET ALA GLN SER TYR ALA ARG SEQRES 6 R 74 ILE MET ASN ILE LYS LEU GLU THR GLU SEQRES 1 T 142 ARG PHE GLU SER VAL ALA LEU GLU GLN LEU GLN ILE VAL SEQRES 2 T 142 HIS ILE SER SER GLU ALA ASP PHE SER ALA VAL TYR SER SEQRES 3 T 142 PHE ARG PRO LYS ASN LEU ASN TYR PHE VAL ASP ILE ILE SEQRES 4 T 142 ALA TYR GLU GLY LYS LEU PRO SER THR ILE SER GLU LYS SEQRES 5 T 142 SER LEU GLY GLY TYR PRO VAL ASP LYS THR MET ASP GLU SEQRES 6 T 142 TYR THR VAL HIS LEU ASN GLY ARG HIS TYR TYR SER ASN SEQRES 7 T 142 SER LYS PHE ALA PHE LEU PRO THR LYS LYS PRO THR PRO SEQRES 8 T 142 GLU ILE ASN TYR MET TYR SER CYS PRO TYR PHE ASN LEU SEQRES 9 T 142 ASP ASN ILE TYR ALA GLY THR ILE THR MET TYR TRP TYR SEQRES 10 T 142 ARG ASN ASP HIS ILE SER ASN ASP ARG LEU GLU SER ILE SEQRES 11 T 142 CYS ALA GLN ALA ALA ARG ILE LEU GLY ARG ALA LYS SEQRES 1 A 74 MET ASN VAL ASP PRO HIS PHE ASP LYS PHE MET GLU SER SEQRES 2 A 74 GLY ILE ARG HIS VAL TYR MET LEU PHE GLU ASN LYS SER SEQRES 3 A 74 VAL GLU SER SER GLU GLN PHE TYR SER PHE MET ARG THR SEQRES 4 A 74 THR TYR LYS ASN ASP PRO CYS SER SER ASP PHE GLU CYS SEQRES 5 A 74 ILE GLU ARG GLY ALA GLU MET ALA GLN SER TYR ALA ARG SEQRES 6 A 74 ILE MET ASN ILE LYS LEU GLU THR GLU SEQRES 1 B 142 ARG PHE GLU SER VAL ALA LEU GLU GLN LEU GLN ILE VAL SEQRES 2 B 142 HIS ILE SER SER GLU ALA ASP PHE SER ALA VAL TYR SER SEQRES 3 B 142 PHE ARG PRO LYS ASN LEU ASN TYR PHE VAL ASP ILE ILE SEQRES 4 B 142 ALA TYR GLU GLY LYS LEU PRO SER THR ILE SER GLU LYS SEQRES 5 B 142 SER LEU GLY GLY TYR PRO VAL ASP LYS THR MET ASP GLU SEQRES 6 B 142 TYR THR VAL HIS LEU ASN GLY ARG HIS TYR TYR SER ASN SEQRES 7 B 142 SER LYS PHE ALA PHE LEU PRO THR LYS LYS PRO THR PRO SEQRES 8 B 142 GLU ILE ASN TYR MET TYR SER CYS PRO TYR PHE ASN LEU SEQRES 9 B 142 ASP ASN ILE TYR ALA GLY THR ILE THR MET TYR TRP TYR SEQRES 10 B 142 ARG ASN ASP HIS ILE SER ASN ASP ARG LEU GLU SER ILE SEQRES 11 B 142 CYS ALA GLN ALA ALA ARG ILE LEU GLY ARG ALA LYS FORMUL 5 HOH *250(H2 O) HELIX 1 AA1 ASP R 27 VAL R 41 1 15 HELIX 2 AA2 TYR R 42 PHE R 45 5 4 HELIX 3 AA3 SER R 49 ASP R 67 1 19 HELIX 4 AA4 SER R 71 MET R 90 1 20 HELIX 5 AA5 PHE T 78 GLU T 94 1 17 HELIX 6 AA6 SER T 126 LEU T 130 5 5 HELIX 7 AA7 MET T 139 ASN T 147 1 9 HELIX 8 AA8 SER T 199 GLY T 215 1 17 HELIX 9 AA9 ASP A 27 VAL A 41 1 15 HELIX 10 AB1 TYR A 42 PHE A 45 5 4 HELIX 11 AB2 SER A 49 ASP A 67 1 19 HELIX 12 AB3 SER A 71 MET A 90 1 20 HELIX 13 AB4 GLU B 79 GLU B 94 1 16 HELIX 14 AB5 SER B 126 LEU B 130 5 5 HELIX 15 AB6 MET B 139 ASN B 147 1 9 HELIX 16 AB7 SER B 199 ALA B 217 1 19 SHEET 1 AA1 6 TYR T 133 PRO T 134 0 SHEET 2 AA1 6 PHE T 111 GLY T 119 -1 N VAL T 112 O TYR T 133 SHEET 3 AA1 6 PHE T 97 ARG T 104 -1 N ARG T 104 O PHE T 111 SHEET 4 AA1 6 TYR T 184 TRP T 192 -1 O TYR T 191 N PHE T 97 SHEET 5 AA1 6 TYR T 171 PHE T 178 -1 N TYR T 173 O MET T 190 SHEET 6 AA1 6 TYR T 151 SER T 153 -1 N TYR T 151 O SER T 174 SHEET 1 AA2 6 TYR B 133 PRO B 134 0 SHEET 2 AA2 6 PHE B 111 GLY B 119 -1 N VAL B 112 O TYR B 133 SHEET 3 AA2 6 PHE B 97 ARG B 104 -1 N ARG B 104 O PHE B 111 SHEET 4 AA2 6 TYR B 184 TRP B 192 -1 O TYR B 191 N PHE B 97 SHEET 5 AA2 6 TYR B 171 PHE B 178 -1 N TYR B 173 O MET B 190 SHEET 6 AA2 6 TYR B 151 SER B 153 -1 N TYR B 151 O SER B 174 SSBOND 1 CYS R 69 CYS R 75 1555 1555 2.07 SSBOND 2 CYS T 175 CYS T 207 1555 1555 2.04 SSBOND 3 CYS A 69 CYS A 75 1555 1555 2.07 SSBOND 4 CYS B 175 CYS B 207 1555 1555 2.04 CISPEP 1 ARG T 104 PRO T 105 0 -15.30 CISPEP 2 ARG B 104 PRO B 105 0 -15.03 CRYST1 116.546 116.546 223.384 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008580 0.004954 0.000000 0.00000 SCALE2 0.000000 0.009908 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004477 0.00000