HEADER VIRAL PROTEIN 30-JUL-19 6PYQ TITLE ASSEMBLY OF VIQKI D455(BETA-L-HOMOASPARTIC ACID)WITH HUMAN TITLE 2 PARAINFLUENZA VIRUS TYPE 3 (HPIV3) FUSION GLYCOPROTEIN N-TERMINAL TITLE 3 HEPTAD REPEAT DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: FUSION GLYCOPROTEIN F1; COMPND 3 CHAIN: A, C, E; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SYNTHETIC PEPTIDE DERIVED FROM FUSION GLYCOPROTEIN F1; COMPND 7 CHAIN: B, D, F; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HUMAN RESPIROVIRUS 3; SOURCE 4 ORGANISM_TAXID: 11216; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: HUMAN PARAINFLUENZA 3 VIRUS (STRAIN SOURCE 8 WASH/47885/57); SOURCE 9 ORGANISM_COMMON: HPIV-3; SOURCE 10 ORGANISM_TAXID: 11217 KEYWDS FUSION GLYCOPROTEIN, SIX-HELIX BUNDLE, FOLDAMER, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR V.K.OUTLAW,S.H.GELLMAN REVDAT 5 10-JUL-24 6PYQ 1 REMARK REVDAT 4 15-NOV-23 6PYQ 1 ATOM REVDAT 3 11-OCT-23 6PYQ 1 REMARK REVDAT 2 21-OCT-20 6PYQ 1 JRNL REVDAT 1 05-AUG-20 6PYQ 0 JRNL AUTH V.K.OUTLAW,D.F.KREITLER,D.STELITANO,M.POROTTO,A.MOSCONA, JRNL AUTH 2 S.H.GELLMAN JRNL TITL EFFECTS OF SINGLE ALPHA-TO-BETA RESIDUE REPLACEMENTS ON JRNL TITL 2 RECOGNITION OF AN EXTENDED SEGMENT IN A VIRAL FUSION JRNL TITL 3 PROTEIN. JRNL REF ACS INFECT DIS. V. 6 2017 2020 JRNL REFN ESSN 2373-8227 JRNL PMID 32692914 JRNL DOI 10.1021/ACSINFECDIS.0C00385 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 20082 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.7300 - 4.3100 0.97 1296 143 0.2511 0.2720 REMARK 3 2 4.3100 - 3.4200 1.00 1319 146 0.1752 0.1967 REMARK 3 3 3.4200 - 2.9900 1.00 1291 142 0.1986 0.2364 REMARK 3 4 2.9900 - 2.7200 1.00 1305 144 0.1988 0.2067 REMARK 3 5 2.7200 - 2.5200 1.00 1280 142 0.1812 0.2642 REMARK 3 6 2.5200 - 2.3700 1.00 1304 144 0.1745 0.1888 REMARK 3 7 2.3700 - 2.2500 1.00 1274 140 0.1774 0.1853 REMARK 3 8 2.2500 - 2.1600 1.00 1295 144 0.1862 0.2168 REMARK 3 9 2.1600 - 2.0700 1.00 1280 142 0.2024 0.2147 REMARK 3 10 2.0700 - 2.0000 1.00 1286 141 0.2256 0.2519 REMARK 3 11 2.0000 - 1.9400 1.00 1303 144 0.2427 0.2356 REMARK 3 12 1.9400 - 1.8800 1.00 1273 141 0.2497 0.2918 REMARK 3 13 1.8800 - 1.8300 1.00 1285 141 0.2809 0.3148 REMARK 3 14 1.8300 - 1.7900 1.00 1293 144 0.3343 0.3311 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.193 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 1853 REMARK 3 ANGLE : 1.405 2495 REMARK 3 CHIRALITY : 0.086 303 REMARK 3 PLANARITY : 0.015 316 REMARK 3 DIHEDRAL : 18.391 1187 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 13.0067 4.7466 18.1355 REMARK 3 T TENSOR REMARK 3 T11: 0.1590 T22: 0.1149 REMARK 3 T33: 0.2094 T12: 0.0186 REMARK 3 T13: -0.0474 T23: 0.0193 REMARK 3 L TENSOR REMARK 3 L11: 3.7230 L22: 1.8875 REMARK 3 L33: 3.3033 L12: 0.4958 REMARK 3 L13: -1.4592 L23: 0.3338 REMARK 3 S TENSOR REMARK 3 S11: 0.0584 S12: 0.2259 S13: 0.0077 REMARK 3 S21: -0.0279 S22: 0.0182 S23: -0.0835 REMARK 3 S31: -0.0283 S32: -0.0177 S33: -0.0695 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6PYQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1000243307. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20102 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 24.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08400 REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 8.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 2.02100 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6NRO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 MM SODIUM NITRATE, 30 MM DIBASIC REMARK 280 SODIUM PHOSPHATE, 30 MM AMMONIUM SULFATE, 100 MM IMIDAZOLE/MES REMARK 280 MONOHYDRATE (PH 6.5), 12.5% PEG1000, 12.5% PEG3350, 12.5% 2- REMARK 280 METHYL-2,4-PENTANEDIOL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.67000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ACE A 138 REMARK 465 NH2 A 190 REMARK 465 ACE B 448 REMARK 465 VAL B 449 REMARK 465 ALA B 450 REMARK 465 LEU B 451 REMARK 465 GLU C 182 REMARK 465 ILE C 183 REMARK 465 VAL C 184 REMARK 465 PRO C 185 REMARK 465 SER C 186 REMARK 465 ILE C 187 REMARK 465 ALA C 188 REMARK 465 ARG C 189 REMARK 465 NH2 C 190 REMARK 465 ACE D 448 REMARK 465 VAL D 449 REMARK 465 ALA D 450 REMARK 465 LEU D 451 REMARK 465 ACE E 138 REMARK 465 GLN E 139 REMARK 465 ALA E 140 REMARK 465 ILE E 183 REMARK 465 VAL E 184 REMARK 465 PRO E 185 REMARK 465 SER E 186 REMARK 465 ILE E 187 REMARK 465 ALA E 188 REMARK 465 ARG E 189 REMARK 465 NH2 E 190 REMARK 465 ACE F 448 REMARK 465 VAL F 449 REMARK 465 ALA F 450 REMARK 465 LEU F 451 REMARK 465 NH2 F 485 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 139 CG CD OE1 NE2 REMARK 470 LYS A 173 CG CD CE NZ REMARK 470 ARG A 189 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 452 CG OD1 OD2 REMARK 470 ILE B 456 CG1 CG2 CD1 REMARK 470 LYS C 173 CG CD CE NZ REMARK 470 ASP D 452 CG OD1 OD2 REMARK 470 VAL E 179 CG1 CG2 REMARK 470 GLU E 182 CG CD OE1 OE2 REMARK 470 ASP F 452 CG OD1 OD2 REMARK 470 ILE F 454 CG1 CG2 CD1 REMARK 470 ILE F 456 CG1 CG2 CD1 REMARK 470 ILE F 458 CG1 CG2 CD1 REMARK 470 GLU F 468 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 143 HH12 ARG E 141 1.21 REMARK 500 HH22 ARG C 141 OD1 ASP E 143 1.43 REMARK 500 HH22 ARG A 141 OD2 ASP C 143 1.43 REMARK 500 O VAL C 161 HG SER C 164 1.54 REMARK 500 OD1 ASP A 143 NH1 ARG E 141 2.07 REMARK 500 NZ LYS B 479 OD2 ASP B 482 2.19 REMARK 500 NH2 ARG C 141 OD1 ASP E 143 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER E 142 OE2 B3D F 455 1556 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN E 180 -66.23 -98.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 B3D B 455 ILE B 456 143.58 REMARK 500 B3D D 455 ILE D 456 146.22 REMARK 500 B3D F 455 ILE F 456 145.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG C 141 0.17 SIDE CHAIN REMARK 500 ARG E 141 0.15 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 B3D B 455 -19.72 REMARK 500 B3D D 455 -16.86 REMARK 500 B3D F 455 -17.78 REMARK 500 REMARK 500 REMARK: NULL DBREF 6PYQ A 139 189 UNP Q84193 Q84193_9MONO 139 189 DBREF 6PYQ B 449 484 UNP P06828 FUS_PI3H4 449 484 DBREF 6PYQ C 139 189 UNP Q84193 Q84193_9MONO 139 189 DBREF 6PYQ D 449 484 UNP P06828 FUS_PI3H4 449 484 DBREF 6PYQ E 139 189 UNP Q84193 Q84193_9MONO 139 189 DBREF 6PYQ F 449 484 UNP P06828 FUS_PI3H4 449 484 SEQADV 6PYQ ACE A 138 UNP Q84193 ACETYLATION SEQADV 6PYQ NH2 A 190 UNP Q84193 AMIDATION SEQADV 6PYQ ACE B 448 UNP P06828 ACETYLATION SEQADV 6PYQ VAL B 459 UNP P06828 GLU 459 ENGINEERED MUTATION SEQADV 6PYQ ILE B 463 UNP P06828 ALA 463 ENGINEERED MUTATION SEQADV 6PYQ GLN B 466 UNP P06828 ASP 466 ENGINEERED MUTATION SEQADV 6PYQ LYS B 479 UNP P06828 GLN 479 ENGINEERED MUTATION SEQADV 6PYQ ILE B 480 UNP P06828 LYS 480 ENGINEERED MUTATION SEQADV 6PYQ NH2 B 485 UNP P06828 AMIDATION SEQADV 6PYQ ACE C 138 UNP Q84193 ACETYLATION SEQADV 6PYQ NH2 C 190 UNP Q84193 AMIDATION SEQADV 6PYQ ACE D 448 UNP P06828 ACETYLATION SEQADV 6PYQ VAL D 459 UNP P06828 GLU 459 ENGINEERED MUTATION SEQADV 6PYQ ILE D 463 UNP P06828 ALA 463 ENGINEERED MUTATION SEQADV 6PYQ GLN D 466 UNP P06828 ASP 466 ENGINEERED MUTATION SEQADV 6PYQ LYS D 479 UNP P06828 GLN 479 ENGINEERED MUTATION SEQADV 6PYQ ILE D 480 UNP P06828 LYS 480 ENGINEERED MUTATION SEQADV 6PYQ NH2 D 485 UNP P06828 AMIDATION SEQADV 6PYQ ACE E 138 UNP Q84193 ACETYLATION SEQADV 6PYQ NH2 E 190 UNP Q84193 AMIDATION SEQADV 6PYQ ACE F 448 UNP P06828 ACETYLATION SEQADV 6PYQ VAL F 459 UNP P06828 GLU 459 ENGINEERED MUTATION SEQADV 6PYQ ILE F 463 UNP P06828 ALA 463 ENGINEERED MUTATION SEQADV 6PYQ GLN F 466 UNP P06828 ASP 466 ENGINEERED MUTATION SEQADV 6PYQ LYS F 479 UNP P06828 GLN 479 ENGINEERED MUTATION SEQADV 6PYQ ILE F 480 UNP P06828 LYS 480 ENGINEERED MUTATION SEQADV 6PYQ NH2 F 485 UNP P06828 AMIDATION SEQRES 1 A 53 ACE GLN ALA ARG SER ASP ILE GLU LYS LEU LYS GLU ALA SEQRES 2 A 53 ILE ARG ASP THR ASN LYS ALA VAL GLN SER VAL GLN SER SEQRES 3 A 53 SER ILE GLY ASN LEU ILE VAL ALA ILE LYS SER VAL GLN SEQRES 4 A 53 ASP TYR VAL ASN LYS GLU ILE VAL PRO SER ILE ALA ARG SEQRES 5 A 53 NH2 SEQRES 1 B 38 ACE VAL ALA LEU ASP PRO ILE B3D ILE SER ILE VAL LEU SEQRES 2 B 38 ASN LYS ILE LYS SER GLN LEU GLU GLU SER LYS GLU TRP SEQRES 3 B 38 ILE ARG ARG SER ASN LYS ILE LEU ASP SER ILE NH2 SEQRES 1 C 53 ACE GLN ALA ARG SER ASP ILE GLU LYS LEU LYS GLU ALA SEQRES 2 C 53 ILE ARG ASP THR ASN LYS ALA VAL GLN SER VAL GLN SER SEQRES 3 C 53 SER ILE GLY ASN LEU ILE VAL ALA ILE LYS SER VAL GLN SEQRES 4 C 53 ASP TYR VAL ASN LYS GLU ILE VAL PRO SER ILE ALA ARG SEQRES 5 C 53 NH2 SEQRES 1 D 38 ACE VAL ALA LEU ASP PRO ILE B3D ILE SER ILE VAL LEU SEQRES 2 D 38 ASN LYS ILE LYS SER GLN LEU GLU GLU SER LYS GLU TRP SEQRES 3 D 38 ILE ARG ARG SER ASN LYS ILE LEU ASP SER ILE NH2 SEQRES 1 E 53 ACE GLN ALA ARG SER ASP ILE GLU LYS LEU LYS GLU ALA SEQRES 2 E 53 ILE ARG ASP THR ASN LYS ALA VAL GLN SER VAL GLN SER SEQRES 3 E 53 SER ILE GLY ASN LEU ILE VAL ALA ILE LYS SER VAL GLN SEQRES 4 E 53 ASP TYR VAL ASN LYS GLU ILE VAL PRO SER ILE ALA ARG SEQRES 5 E 53 NH2 SEQRES 1 F 38 ACE VAL ALA LEU ASP PRO ILE B3D ILE SER ILE VAL LEU SEQRES 2 F 38 ASN LYS ILE LYS SER GLN LEU GLU GLU SER LYS GLU TRP SEQRES 3 F 38 ILE ARG ARG SER ASN LYS ILE LEU ASP SER ILE NH2 MODRES 6PYQ B3D B 455 ASP MODIFIED RESIDUE MODRES 6PYQ B3D D 455 ASP MODIFIED RESIDUE MODRES 6PYQ B3D F 455 ASP MODIFIED RESIDUE HET B3D B 455 15 HET NH2 B 485 3 HET ACE C 138 3 HET B3D D 455 15 HET NH2 D 485 3 HET B3D F 455 15 HETNAM B3D 3-AMINOPENTANEDIOIC ACID HETNAM NH2 AMINO GROUP HETNAM ACE ACETYL GROUP HETSYN B3D BETA-HOMOASPARTATE FORMUL 2 B3D 3(C5 H9 N O4) FORMUL 2 NH2 2(H2 N) FORMUL 3 ACE C2 H4 O FORMUL 7 HOH *54(H2 O) HELIX 1 AA1 GLN A 139 GLU A 182 1 44 HELIX 2 AA2 ILE A 183 ARG A 189 1 7 HELIX 3 AA3 PRO B 453 SER B 483 1 31 HELIX 4 AA4 GLN C 139 LYS C 181 1 43 HELIX 5 AA5 PRO D 453 SER D 483 1 31 HELIX 6 AA6 SER E 142 LYS E 181 1 40 HELIX 7 AA7 PRO F 453 SER F 483 1 31 LINK C ILE B 454 N B3D B 455 1555 1555 1.33 LINK C B3D B 455 N ILE B 456 1555 1555 1.33 LINK C ILE B 484 N NH2 B 485 1555 1555 1.33 LINK C ACE C 138 N GLN C 139 1555 1555 1.32 LINK C ILE D 454 N B3D D 455 1555 1555 1.33 LINK C B3D D 455 N ILE D 456 1555 1555 1.35 LINK C ILE D 484 N NH2 D 485 1555 1555 1.33 LINK C ILE F 454 N B3D F 455 1555 1555 1.33 LINK C B3D F 455 N ILE F 456 1555 1555 1.33 CRYST1 39.850 49.340 56.180 90.00 103.61 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025094 0.000000 0.006076 0.00000 SCALE2 0.000000 0.020268 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018314 0.00000