HEADER SIGNALING PROTEIN/HYDROLASE 01-AUG-19 6Q01 TITLE TDP2 UBA DOMAIN BOUND TO UBIQUITIN AT 0.85 ANGSTROMS RESOLUTION, TITLE 2 CRYSTAL FORM 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN; COMPND 3 CHAIN: A, B; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: TYROSYL-DNA PHOSPHODIESTERASE 2; COMPND 6 CHAIN: C, D; COMPND 7 SYNONYM: HTDP2,5'-TYROSYL-DNA PHOSPHODIESTERASE,5'-TYR-DNA COMPND 8 PHOSPHODIESTERASE,ETS1-ASSOCIATED PROTEIN 2,ETS1-ASSOCIATED PROTEIN COMPND 9 II,EAPII,TRAF AND TNF RECEPTOR-ASSOCIATED PROTEIN,TYROSYL-RNA COMPND 10 PHOSPHODIESTERASE,VPG UNLINKASE; COMPND 11 EC: 3.1.4.-; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 GENE: TDP2, EAP2, TTRAP, AD-022; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 13 EXPRESSION_SYSTEM_VARIANT: ROSETTA 2; SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 15 EXPRESSION_SYSTEM_PLASMID: PMCSG9 KEYWDS TDP2, DNA DAMAGE RESPONSE, CELL SIGNALING, POST-TRANSLATIONAL KEYWDS 2 MODIFICATION, TOPOISOMERASE 2, SIGNALING PROTEIN, SIGNALING PROTEIN- KEYWDS 3 HYDROLASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.J.SCHELLENBERG,J.M.KRAHN,R.S.WILLIAMS REVDAT 4 13-MAR-24 6Q01 1 LINK REVDAT 3 24-JUN-20 6Q01 1 JRNL REVDAT 2 13-MAY-20 6Q01 1 JRNL REVDAT 1 29-APR-20 6Q01 0 JRNL AUTH M.J.SCHELLENBERG,C.D.APPEL,A.A.RICCIO,L.R.BUTLER,J.M.KRAHN, JRNL AUTH 2 J.A.LIEBERMANN,F.CORTES-LEDESMA,R.S.WILLIAMS JRNL TITL UBIQUITIN STIMULATED REVERSAL OF TOPOISOMERASE 2 DNA-PROTEIN JRNL TITL 2 CROSSLINKS BY TDP2. JRNL REF NUCLEIC ACIDS RES. V. 48 6310 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32356875 JRNL DOI 10.1093/NAR/GKAA318 REMARK 2 REMARK 2 RESOLUTION. 0.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 205421 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.101 REMARK 3 R VALUE (WORKING SET) : 0.100 REMARK 3 FREE R VALUE : 0.114 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 10271 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.9600 - 2.6433 1.00 6984 366 0.1228 0.1374 REMARK 3 2 2.6433 - 2.0983 1.00 6757 371 0.0981 0.1037 REMARK 3 3 2.0983 - 1.8331 1.00 6691 374 0.0935 0.1116 REMARK 3 4 1.8331 - 1.6656 1.00 6635 396 0.0951 0.1108 REMARK 3 5 1.6656 - 1.5462 1.00 6618 394 0.0864 0.0958 REMARK 3 6 1.5462 - 1.4550 1.00 6663 335 0.0803 0.0983 REMARK 3 7 1.4550 - 1.3822 1.00 6675 305 0.0793 0.0950 REMARK 3 8 1.3822 - 1.3220 1.00 6626 342 0.0795 0.0997 REMARK 3 9 1.3220 - 1.2711 1.00 6598 363 0.0754 0.0876 REMARK 3 10 1.2711 - 1.2272 1.00 6610 346 0.0730 0.0877 REMARK 3 11 1.2272 - 1.1889 1.00 6608 323 0.0691 0.0781 REMARK 3 12 1.1889 - 1.1549 1.00 6634 338 0.0671 0.0788 REMARK 3 13 1.1549 - 1.1245 1.00 6588 331 0.0681 0.0862 REMARK 3 14 1.1245 - 1.0970 1.00 6594 335 0.0703 0.0870 REMARK 3 15 1.0970 - 1.0721 1.00 6567 351 0.0745 0.0993 REMARK 3 16 1.0721 - 1.0493 1.00 6599 358 0.0789 0.0931 REMARK 3 17 1.0493 - 1.0283 1.00 6592 332 0.0836 0.1103 REMARK 3 18 1.0283 - 1.0089 1.00 6557 332 0.0900 0.1056 REMARK 3 19 1.0089 - 0.9909 1.00 6565 333 0.0972 0.1109 REMARK 3 20 0.9909 - 0.9741 1.00 6568 339 0.1030 0.1166 REMARK 3 21 0.9741 - 0.9584 1.00 6493 390 0.1176 0.1346 REMARK 3 22 0.9584 - 0.9436 1.00 6557 331 0.1245 0.1340 REMARK 3 23 0.9436 - 0.9297 0.99 6537 347 0.1352 0.1523 REMARK 3 24 0.9297 - 0.9166 0.99 6486 351 0.1515 0.1597 REMARK 3 25 0.9166 - 0.9043 0.99 6538 329 0.1642 0.1908 REMARK 3 26 0.9043 - 0.8925 0.99 6437 338 0.1864 0.1988 REMARK 3 27 0.8925 - 0.8814 0.96 6250 326 0.2020 0.2064 REMARK 3 28 0.8814 - 0.8707 0.93 6099 343 0.2227 0.2209 REMARK 3 29 0.8707 - 0.8606 0.89 5803 305 0.2480 0.2614 REMARK 3 30 0.8606 - 0.8510 0.79 5221 247 0.2810 0.2953 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.060 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 9.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2501 REMARK 3 ANGLE : 1.385 3455 REMARK 3 CHIRALITY : 0.080 392 REMARK 3 PLANARITY : 0.008 472 REMARK 3 DIHEDRAL : 14.118 1040 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Q01 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1000242319. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8211 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 205551 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 0.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.85200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MM TRIS PH 7.5, 100 MM NACL, 150 MM REMARK 280 MAGNESIUM FORMATE, 200 MM POTASSIUM FORMATE, 18% (W/V) PEG 3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.89650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.83850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.73050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.83850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.89650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.73050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 11 NZ REMARK 470 ARG A 74 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 11 NZ REMARK 470 ARG B 74 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU C 49 HE2 GLU D 55 4556 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS C 29 CB CYS C 29 SG -0.096 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU D 63 73.71 -153.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 399 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A 400 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH B 264 DISTANCE = 7.40 ANGSTROMS REMARK 525 HOH C 303 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH C 304 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH C 305 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH C 306 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH C 307 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH D 297 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH D 298 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH D 299 DISTANCE = 7.10 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 16 OE2 REMARK 620 2 HOH A 254 O 93.9 REMARK 620 3 HOH A 282 O 86.8 89.2 REMARK 620 4 HOH A 309 O 90.8 172.7 85.4 REMARK 620 5 HOH A 349 O 177.6 85.5 90.8 89.7 REMARK 620 6 GLU B 16 OE2 32.7 102.9 118.0 84.1 149.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 32 OD1 REMARK 620 2 HOH A 223 O 81.4 REMARK 620 3 HOH A 258 O 86.0 165.2 REMARK 620 4 HOH A 322 O 96.6 92.6 96.6 REMARK 620 5 ASP B 32 O 88.6 107.7 64.0 159.6 REMARK 620 6 ASP B 32 OD1 88.6 111.4 60.3 156.0 3.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 104 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 32 OD1 REMARK 620 2 HOH A 223 O 94.4 REMARK 620 3 HOH A 342 O 77.6 113.7 REMARK 620 4 ASP B 32 O 60.9 93.3 132.1 REMARK 620 5 ASP B 32 OD1 60.2 97.0 129.4 3.7 REMARK 620 6 HOH B 118 O 155.3 90.6 78.3 143.0 143.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K C 102 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 47 O REMARK 620 2 HOH B 179 O 83.1 REMARK 620 3 HOH B 213 O 161.6 84.2 REMARK 620 4 ALA C 36 O 83.2 95.4 111.3 REMARK 620 5 TYR C 61 OH 117.1 159.0 77.3 82.3 REMARK 620 6 HOH C 267 O 90.5 114.6 82.7 148.4 73.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K D 101 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 287 O REMARK 620 2 ALA D 36 O 111.2 REMARK 620 3 SER D 37 O 84.8 67.9 REMARK 620 4 TYR D 61 OH 166.5 81.2 105.6 REMARK 620 5 HOH D 240 O 92.7 121.1 61.4 85.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BEZ C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K D 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6Q00 RELATED DB: PDB DBREF 6Q01 A 1 76 UNP P62992 RS27A_BOVIN 1 76 DBREF 6Q01 B 1 76 UNP P62992 RS27A_BOVIN 1 76 DBREF 6Q01 C 25 66 UNP O95551 TYDP2_HUMAN 25 66 DBREF 6Q01 D 25 66 UNP O95551 TYDP2_HUMAN 25 66 SEQADV 6Q01 SER C 22 UNP O95551 EXPRESSION TAG SEQADV 6Q01 ASN C 23 UNP O95551 EXPRESSION TAG SEQADV 6Q01 ALA C 24 UNP O95551 EXPRESSION TAG SEQADV 6Q01 SER D 22 UNP O95551 EXPRESSION TAG SEQADV 6Q01 ASN D 23 UNP O95551 EXPRESSION TAG SEQADV 6Q01 ALA D 24 UNP O95551 EXPRESSION TAG SEQRES 1 A 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 A 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 A 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 A 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 A 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 A 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 B 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 B 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 B 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 C 45 SER ASN ALA ARG ARG LEU LEU CYS VAL GLU PHE ALA SER SEQRES 2 C 45 VAL ALA SER CYS ASP ALA ALA VAL ALA GLN CYS PHE LEU SEQRES 3 C 45 ALA GLU ASN ASP TRP GLU MET GLU ARG ALA LEU ASN SER SEQRES 4 C 45 TYR PHE GLU PRO PRO VAL SEQRES 1 D 45 SER ASN ALA ARG ARG LEU LEU CYS VAL GLU PHE ALA SER SEQRES 2 D 45 VAL ALA SER CYS ASP ALA ALA VAL ALA GLN CYS PHE LEU SEQRES 3 D 45 ALA GLU ASN ASP TRP GLU MET GLU ARG ALA LEU ASN SER SEQRES 4 D 45 TYR PHE GLU PRO PRO VAL HET MG A 101 1 HET MG A 102 1 HET EDO A 103 4 HET K A 104 1 HET BEZ C 101 9 HET K C 102 1 HET K D 101 1 HETNAM MG MAGNESIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM K POTASSIUM ION HETNAM BEZ BENZOIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 5 MG 2(MG 2+) FORMUL 7 EDO C2 H6 O2 FORMUL 8 K 3(K 1+) FORMUL 9 BEZ C7 H6 O2 FORMUL 12 HOH *570(H2 O) HELIX 1 AA1 THR A 22 GLY A 35 1 14 HELIX 2 AA2 PRO A 37 ASP A 39 5 3 HELIX 3 AA3 LEU A 56 ASN A 60 5 5 HELIX 4 AA4 THR B 22 GLY B 35 1 14 HELIX 5 AA5 PRO B 37 ASP B 39 5 3 HELIX 6 AA6 LEU B 56 ASN B 60 5 5 HELIX 7 AA7 ASN C 23 SER C 37 1 15 HELIX 8 AA8 ASP C 39 ASN C 50 1 12 HELIX 9 AA9 GLU C 53 GLU C 63 1 11 HELIX 10 AB1 ASN D 23 SER D 37 1 15 HELIX 11 AB2 ASP D 39 ASN D 50 1 12 HELIX 12 AB3 GLU D 53 GLU D 63 1 11 SHEET 1 AA1 5 THR A 12 GLU A 16 0 SHEET 2 AA1 5 GLN A 2 THR A 7 -1 N VAL A 5 O ILE A 13 SHEET 3 AA1 5 THR A 66 LEU A 71 1 O LEU A 67 N PHE A 4 SHEET 4 AA1 5 GLN A 41 PHE A 45 -1 N ILE A 44 O HIS A 68 SHEET 5 AA1 5 LYS A 48 GLN A 49 -1 O LYS A 48 N PHE A 45 SHEET 1 AA2 5 THR B 12 GLU B 16 0 SHEET 2 AA2 5 GLN B 2 THR B 7 -1 N VAL B 5 O ILE B 13 SHEET 3 AA2 5 THR B 66 LEU B 71 1 O LEU B 67 N PHE B 4 SHEET 4 AA2 5 GLN B 41 PHE B 45 -1 N ARG B 42 O VAL B 70 SHEET 5 AA2 5 LYS B 48 GLN B 49 -1 O LYS B 48 N PHE B 45 LINK OE2 GLU A 16 MG MG A 102 1555 1555 2.04 LINK OD1AASP A 32 MG A MG A 101 1555 1555 1.97 LINK OD1BASP A 32 K B K A 104 1555 1555 3.23 LINK O GLY A 47 K A K C 102 1555 1555 2.92 LINK MG A MG A 101 O AHOH A 223 1555 1555 2.07 LINK MG A MG A 101 O AHOH A 258 1555 1555 2.08 LINK MG A MG A 101 O AHOH A 322 1555 1555 2.06 LINK MG A MG A 101 O ASP B 32 2464 1555 2.13 LINK MG A MG A 101 OD1 ASP B 32 2464 1555 2.21 LINK MG MG A 102 O HOH A 254 1555 1555 2.09 LINK MG MG A 102 O HOH A 282 1555 1555 2.10 LINK MG MG A 102 O HOH A 309 1555 1555 2.09 LINK MG MG A 102 O HOH A 349 1555 1555 2.07 LINK MG MG A 102 OE2 GLU B 16 3545 1555 2.04 LINK K B K A 104 O BHOH A 223 1555 1555 2.99 LINK K B K A 104 O HOH A 342 1555 1555 3.04 LINK K B K A 104 O ASP B 32 2464 1555 2.62 LINK K B K A 104 OD1 ASP B 32 2464 1555 3.16 LINK K B K A 104 O BHOH B 118 1555 2465 2.63 LINK O HOH A 287 K A K D 101 2564 1555 2.68 LINK O HOH B 179 K A K C 102 2565 1555 3.42 LINK O AHOH B 213 K A K C 102 2565 1555 3.40 LINK O ALA C 36 K A K C 102 1555 1555 2.56 LINK OH TYR C 61 K A K C 102 1555 1555 2.80 LINK K A K C 102 O AHOH C 267 1555 1555 3.07 LINK O ALA D 36 K A K D 101 1555 1555 2.78 LINK O SER D 37 K A K D 101 1555 1555 2.91 LINK OH TYR D 61 K A K D 101 1555 1555 2.65 LINK K A K D 101 O HOH D 240 1555 1555 2.67 SITE 1 AC1 7 ASP A 32 K A 104 HOH A 223 HOH A 258 SITE 2 AC1 7 HOH A 322 ASP B 32 HOH B 118 SITE 1 AC2 6 GLU A 16 HOH A 254 HOH A 282 HOH A 309 SITE 2 AC2 6 HOH A 349 GLU B 16 SITE 1 AC3 10 ASP A 58 HOH A 230 HOH A 265 HOH A 331 SITE 2 AC3 10 HOH A 336 HOH A 387 ALA C 24 ARG D 26 SITE 3 AC3 10 VAL D 30 ALA D 40 SITE 1 AC4 8 ASP A 32 MG A 101 HOH A 223 HOH A 258 SITE 2 AC4 8 HOH A 322 HOH A 342 ASP B 32 HOH B 118 SITE 1 AC5 11 ALA C 24 ARG C 25 LEU C 28 HOH C 202 SITE 2 AC5 11 HOH C 217 HOH C 252 HOH C 281 HOH C 288 SITE 3 AC5 11 ARG D 26 GLN D 44 HOH D 273 SITE 1 AC6 5 GLY A 47 ALA C 36 TYR C 61 HOH C 211 SITE 2 AC6 5 HOH C 267 SITE 1 AC7 6 HOH A 287 ALA D 36 SER D 37 TYR D 61 SITE 2 AC7 6 HOH D 204 HOH D 240 CRYST1 53.793 65.461 67.677 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018590 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015276 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014776 0.00000