data_6Q08 # _entry.id 6Q08 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6Q08 pdb_00006q08 10.2210/pdb6q08/pdb WWPDB D_1000242882 ? ? BMRB 30650 ? 10.13018/BMR30650 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-08-05 2 'Structure model' 1 1 2023-06-14 3 'Structure model' 1 2 2024-05-15 4 'Structure model' 1 3 2024-10-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' Other 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' database_2 2 2 'Structure model' pdbx_database_status 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 6 4 'Structure model' pdbx_entry_details # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 3 'Structure model' '_database_2.pdbx_DOI' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 6Q08 _pdbx_database_status.recvd_initial_deposition_date 2019-08-01 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Synoeca peptide was isolated from the venom of wasp synoeca surinama.' _pdbx_database_related.db_id 30650 _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Alves, E.S.' 1 ? 'Rodrigues, L.V.' 2 ? 'Liao, L.M.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'NMR STRUCTURE OF THE ANTIMICROBIAL PEPTIDE ISOLATED FROM THE VENOM OF WASP Synoeca Surinama.' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Alves, E.S.F.' 1 ? primary 'Rodrigues, L.V.' 2 ? primary 'Liao, L.M.' 3 ? # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description 'Synoeca peptide' _entity.formula_weight 1598.029 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'INWLKLGKKIIASL(NH2)' _entity_poly.pdbx_seq_one_letter_code_can INWLKLGKKIIASLX _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ILE n 1 2 ASN n 1 3 TRP n 1 4 LEU n 1 5 LYS n 1 6 LEU n 1 7 GLY n 1 8 LYS n 1 9 LYS n 1 10 ILE n 1 11 ILE n 1 12 ALA n 1 13 SER n 1 14 LEU n 1 15 NH2 n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 15 _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Synoeca surinama' _entity_src_nat.pdbx_ncbi_taxonomy_id 1620924 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ILE 1 1 1 ILE ILE A . n A 1 2 ASN 2 2 2 ASN ASN A . n A 1 3 TRP 3 3 3 TRP TRP A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 LYS 5 5 5 LYS LYS A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 ILE 11 11 11 ILE ILE A . n A 1 12 ALA 12 12 12 ALA ALA A . n A 1 13 SER 13 13 13 SER SER A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 NH2 15 15 ? ? ? A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6Q08 _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 6Q08 _struct.title 'Synoeca peptide was isolated from the venom of wasp synoeca surinama.' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6Q08 _struct_keywords.text 'Antimicrobial, peptide structure, ANTIMICROBIAL PROTEIN' _struct_keywords.pdbx_keywords 'ANTIMICROBIAL PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6Q08 _struct_ref.pdbx_db_accession 6Q08 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6Q08 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 15 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6Q08 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 15 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 15 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'mass spectrometry' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id AA1 _struct_conf.beg_label_comp_id TRP _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 3 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id SER _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 13 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id TRP _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 3 _struct_conf.end_auth_comp_id SER _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 13 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _pdbx_entry_details.entry_id 6Q08 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A LYS 9 ? ? HG A SER 13 ? ? 1.44 2 2 O A LYS 9 ? ? HG A SER 13 ? ? 1.35 3 2 O A TRP 3 ? ? H A LEU 6 ? ? 1.55 4 3 O A LYS 9 ? ? HG A SER 13 ? ? 1.41 5 4 O A LEU 4 ? ? HZ2 A LYS 8 ? ? 1.39 6 4 O A LYS 9 ? ? HG A SER 13 ? ? 1.42 7 4 O A LEU 6 ? ? H A ILE 10 ? ? 1.53 8 4 O A SER 13 ? ? H A LEU 14 ? ? 1.56 9 5 O A LYS 9 ? ? HG A SER 13 ? ? 1.44 10 6 O A LYS 9 ? ? HG A SER 13 ? ? 1.39 11 7 O A LYS 9 ? ? HG A SER 13 ? ? 1.41 12 7 O A LEU 4 ? ? HZ2 A LYS 8 ? ? 1.43 13 7 O A GLY 7 ? ? H A ILE 11 ? ? 1.58 14 8 O A LEU 4 ? ? HZ2 A LYS 8 ? ? 1.36 15 8 O A LYS 9 ? ? HG A SER 13 ? ? 1.37 16 9 O A GLY 7 ? ? H A ILE 11 ? ? 1.40 17 9 O A LYS 9 ? ? HG A SER 13 ? ? 1.42 18 10 O A LYS 9 ? ? HG A SER 13 ? ? 1.36 19 10 O A LEU 4 ? ? HZ2 A LYS 8 ? ? 1.38 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 13 ? ? -66.16 67.22 2 8 SER A 13 ? ? -69.95 64.90 3 10 LEU A 4 ? ? -35.81 -37.68 # _pdbx_nmr_ensemble.entry_id 6Q08 _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 6Q08 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1 mM synoeca, 100 mM [U-98% 2H] SDS-D25, 5 % v/v [U-98% 2H] DSS, 90 % v/v H2O, 10 % [U-99% 2H] D2O, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label Synoeca _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details 'A solution containing 1 mM of peptide was prepared in 300 mM of SDS-d25, 90:10 H2O/D2O and 5% of DSS, and the pH adjusted for 7.' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 synoeca 1 ? mM 'natural abundance' 1 SDS-D25 100 ? mM '[U-98% 2H]' 1 DSS 5 ? '% v/v' '[U-98% 2H]' 1 H2O 90 ? '% v/v' 'natural abundance' 1 D2O 10 ? % '[U-99% 2H]' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7 _pdbx_nmr_exptl_sample_conditions.ionic_strength neutal _pdbx_nmr_exptl_sample_conditions.details ;A solution containing 1 mM of peptide was prepared in 300 mM of SDS-d25, 90:10 H2O/D2O and 5% of DSS (4,4-dimethyl-4-silapentane-1-sulfonic acid), and the pH adjusted for 7. ; _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units 'Not defined' _pdbx_nmr_exptl_sample_conditions.label synoeca _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H TOCSY' 1 isotropic 2 1 1 '2D 1H-1H NOESY' 1 isotropic 3 1 1 '2D 1H-13C HSQC' 1 isotropic # _pdbx_nmr_refine.entry_id 6Q08 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details 'In the final structure calculation of synoeca-MP, 176 unique NOEs and 24 dihedral angles were used as restraints' _pdbx_nmr_refine.software_ordinal 4 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 'chemical shift assignment' NMRView ? 'Johnson, One Moon Scientific' 2 'structure calculation' 'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' 3 processing NMRPipe ? 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' 4 refinement 'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' 5 'geometry optimization' TALOS ? 'Cornilescu, Delaglio and Bax' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A NH2 15 ? A NH2 15 2 2 Y 1 A NH2 15 ? A NH2 15 3 3 Y 1 A NH2 15 ? A NH2 15 4 4 Y 1 A NH2 15 ? A NH2 15 5 5 Y 1 A NH2 15 ? A NH2 15 6 6 Y 1 A NH2 15 ? A NH2 15 7 7 Y 1 A NH2 15 ? A NH2 15 8 8 Y 1 A NH2 15 ? A NH2 15 9 9 Y 1 A NH2 15 ? A NH2 15 10 10 Y 1 A NH2 15 ? A NH2 15 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASN N N N N 14 ASN CA C N S 15 ASN C C N N 16 ASN O O N N 17 ASN CB C N N 18 ASN CG C N N 19 ASN OD1 O N N 20 ASN ND2 N N N 21 ASN OXT O N N 22 ASN H H N N 23 ASN H2 H N N 24 ASN HA H N N 25 ASN HB2 H N N 26 ASN HB3 H N N 27 ASN HD21 H N N 28 ASN HD22 H N N 29 ASN HXT H N N 30 GLY N N N N 31 GLY CA C N N 32 GLY C C N N 33 GLY O O N N 34 GLY OXT O N N 35 GLY H H N N 36 GLY H2 H N N 37 GLY HA2 H N N 38 GLY HA3 H N N 39 GLY HXT H N N 40 ILE N N N N 41 ILE CA C N S 42 ILE C C N N 43 ILE O O N N 44 ILE CB C N S 45 ILE CG1 C N N 46 ILE CG2 C N N 47 ILE CD1 C N N 48 ILE OXT O N N 49 ILE H H N N 50 ILE H2 H N N 51 ILE HA H N N 52 ILE HB H N N 53 ILE HG12 H N N 54 ILE HG13 H N N 55 ILE HG21 H N N 56 ILE HG22 H N N 57 ILE HG23 H N N 58 ILE HD11 H N N 59 ILE HD12 H N N 60 ILE HD13 H N N 61 ILE HXT H N N 62 LEU N N N N 63 LEU CA C N S 64 LEU C C N N 65 LEU O O N N 66 LEU CB C N N 67 LEU CG C N N 68 LEU CD1 C N N 69 LEU CD2 C N N 70 LEU OXT O N N 71 LEU H H N N 72 LEU H2 H N N 73 LEU HA H N N 74 LEU HB2 H N N 75 LEU HB3 H N N 76 LEU HG H N N 77 LEU HD11 H N N 78 LEU HD12 H N N 79 LEU HD13 H N N 80 LEU HD21 H N N 81 LEU HD22 H N N 82 LEU HD23 H N N 83 LEU HXT H N N 84 LYS N N N N 85 LYS CA C N S 86 LYS C C N N 87 LYS O O N N 88 LYS CB C N N 89 LYS CG C N N 90 LYS CD C N N 91 LYS CE C N N 92 LYS NZ N N N 93 LYS OXT O N N 94 LYS H H N N 95 LYS H2 H N N 96 LYS HA H N N 97 LYS HB2 H N N 98 LYS HB3 H N N 99 LYS HG2 H N N 100 LYS HG3 H N N 101 LYS HD2 H N N 102 LYS HD3 H N N 103 LYS HE2 H N N 104 LYS HE3 H N N 105 LYS HZ1 H N N 106 LYS HZ2 H N N 107 LYS HZ3 H N N 108 LYS HXT H N N 109 NH2 N N N N 110 NH2 HN1 H N N 111 NH2 HN2 H N N 112 SER N N N N 113 SER CA C N S 114 SER C C N N 115 SER O O N N 116 SER CB C N N 117 SER OG O N N 118 SER OXT O N N 119 SER H H N N 120 SER H2 H N N 121 SER HA H N N 122 SER HB2 H N N 123 SER HB3 H N N 124 SER HG H N N 125 SER HXT H N N 126 TRP N N N N 127 TRP CA C N S 128 TRP C C N N 129 TRP O O N N 130 TRP CB C N N 131 TRP CG C Y N 132 TRP CD1 C Y N 133 TRP CD2 C Y N 134 TRP NE1 N Y N 135 TRP CE2 C Y N 136 TRP CE3 C Y N 137 TRP CZ2 C Y N 138 TRP CZ3 C Y N 139 TRP CH2 C Y N 140 TRP OXT O N N 141 TRP H H N N 142 TRP H2 H N N 143 TRP HA H N N 144 TRP HB2 H N N 145 TRP HB3 H N N 146 TRP HD1 H N N 147 TRP HE1 H N N 148 TRP HE3 H N N 149 TRP HZ2 H N N 150 TRP HZ3 H N N 151 TRP HH2 H N N 152 TRP HXT H N N 153 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASN N CA sing N N 13 ASN N H sing N N 14 ASN N H2 sing N N 15 ASN CA C sing N N 16 ASN CA CB sing N N 17 ASN CA HA sing N N 18 ASN C O doub N N 19 ASN C OXT sing N N 20 ASN CB CG sing N N 21 ASN CB HB2 sing N N 22 ASN CB HB3 sing N N 23 ASN CG OD1 doub N N 24 ASN CG ND2 sing N N 25 ASN ND2 HD21 sing N N 26 ASN ND2 HD22 sing N N 27 ASN OXT HXT sing N N 28 GLY N CA sing N N 29 GLY N H sing N N 30 GLY N H2 sing N N 31 GLY CA C sing N N 32 GLY CA HA2 sing N N 33 GLY CA HA3 sing N N 34 GLY C O doub N N 35 GLY C OXT sing N N 36 GLY OXT HXT sing N N 37 ILE N CA sing N N 38 ILE N H sing N N 39 ILE N H2 sing N N 40 ILE CA C sing N N 41 ILE CA CB sing N N 42 ILE CA HA sing N N 43 ILE C O doub N N 44 ILE C OXT sing N N 45 ILE CB CG1 sing N N 46 ILE CB CG2 sing N N 47 ILE CB HB sing N N 48 ILE CG1 CD1 sing N N 49 ILE CG1 HG12 sing N N 50 ILE CG1 HG13 sing N N 51 ILE CG2 HG21 sing N N 52 ILE CG2 HG22 sing N N 53 ILE CG2 HG23 sing N N 54 ILE CD1 HD11 sing N N 55 ILE CD1 HD12 sing N N 56 ILE CD1 HD13 sing N N 57 ILE OXT HXT sing N N 58 LEU N CA sing N N 59 LEU N H sing N N 60 LEU N H2 sing N N 61 LEU CA C sing N N 62 LEU CA CB sing N N 63 LEU CA HA sing N N 64 LEU C O doub N N 65 LEU C OXT sing N N 66 LEU CB CG sing N N 67 LEU CB HB2 sing N N 68 LEU CB HB3 sing N N 69 LEU CG CD1 sing N N 70 LEU CG CD2 sing N N 71 LEU CG HG sing N N 72 LEU CD1 HD11 sing N N 73 LEU CD1 HD12 sing N N 74 LEU CD1 HD13 sing N N 75 LEU CD2 HD21 sing N N 76 LEU CD2 HD22 sing N N 77 LEU CD2 HD23 sing N N 78 LEU OXT HXT sing N N 79 LYS N CA sing N N 80 LYS N H sing N N 81 LYS N H2 sing N N 82 LYS CA C sing N N 83 LYS CA CB sing N N 84 LYS CA HA sing N N 85 LYS C O doub N N 86 LYS C OXT sing N N 87 LYS CB CG sing N N 88 LYS CB HB2 sing N N 89 LYS CB HB3 sing N N 90 LYS CG CD sing N N 91 LYS CG HG2 sing N N 92 LYS CG HG3 sing N N 93 LYS CD CE sing N N 94 LYS CD HD2 sing N N 95 LYS CD HD3 sing N N 96 LYS CE NZ sing N N 97 LYS CE HE2 sing N N 98 LYS CE HE3 sing N N 99 LYS NZ HZ1 sing N N 100 LYS NZ HZ2 sing N N 101 LYS NZ HZ3 sing N N 102 LYS OXT HXT sing N N 103 NH2 N HN1 sing N N 104 NH2 N HN2 sing N N 105 SER N CA sing N N 106 SER N H sing N N 107 SER N H2 sing N N 108 SER CA C sing N N 109 SER CA CB sing N N 110 SER CA HA sing N N 111 SER C O doub N N 112 SER C OXT sing N N 113 SER CB OG sing N N 114 SER CB HB2 sing N N 115 SER CB HB3 sing N N 116 SER OG HG sing N N 117 SER OXT HXT sing N N 118 TRP N CA sing N N 119 TRP N H sing N N 120 TRP N H2 sing N N 121 TRP CA C sing N N 122 TRP CA CB sing N N 123 TRP CA HA sing N N 124 TRP C O doub N N 125 TRP C OXT sing N N 126 TRP CB CG sing N N 127 TRP CB HB2 sing N N 128 TRP CB HB3 sing N N 129 TRP CG CD1 doub Y N 130 TRP CG CD2 sing Y N 131 TRP CD1 NE1 sing Y N 132 TRP CD1 HD1 sing N N 133 TRP CD2 CE2 doub Y N 134 TRP CD2 CE3 sing Y N 135 TRP NE1 CE2 sing Y N 136 TRP NE1 HE1 sing N N 137 TRP CE2 CZ2 sing Y N 138 TRP CE3 CZ3 doub Y N 139 TRP CE3 HE3 sing N N 140 TRP CZ2 CH2 doub Y N 141 TRP CZ2 HZ2 sing N N 142 TRP CZ3 CH2 sing Y N 143 TRP CZ3 HZ3 sing N N 144 TRP CH2 HH2 sing N N 145 TRP OXT HXT sing N N 146 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 500 _pdbx_nmr_spectrometer.details ? # _atom_sites.entry_id 6Q08 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O # loop_