HEADER IMMUNE SYSTEM 01-AUG-19 6Q0L TITLE INFERRED INTERMEDIATE I-7 (I-7-1) OF THE HUMAN ANTIBODY LINEAGE 652 IN TITLE 2 COMPLEX WITH INFLUENZA HEMAGGLUTININ HEAD DOMAIN OF TITLE 3 A/BEIJING/262/95(H1N1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HEAD DOMAIN, RESIDUES 65-280; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: FAB HEAVY CHAIN; COMPND 8 CHAIN: H; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: FAB LAMBDA CHAIN; COMPND 12 CHAIN: L; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (A/BEIJING/262/1995(H1N1)); SOURCE 3 ORGANISM_TAXID: 518922; SOURCE 4 STRAIN: A/BEIJING/262/1995(H1N1); SOURCE 5 GENE: HA; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: BTI-TN-5B1-4; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 17 EXPRESSION_SYSTEM_CELL_LINE: 293F; SOURCE 18 MOL_ID: 3; SOURCE 19 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 20 ORGANISM_COMMON: HUMAN; SOURCE 21 ORGANISM_TAXID: 9606; SOURCE 22 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 23 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 25 EXPRESSION_SYSTEM_CELL_LINE: 293F KEYWDS ANTIBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR K.R.MCCARTHY,S.C.HARRISON REVDAT 3 29-JUL-20 6Q0L 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 01-JAN-20 6Q0L 1 JRNL REVDAT 1 18-DEC-19 6Q0L 0 JRNL AUTH K.R.MCCARTHY,D.D.RAYMOND,K.T.DO,A.G.SCHMIDT,S.C.HARRISON JRNL TITL AFFINITY MATURATION IN A HUMAN HUMORAL RESPONSE TO INFLUENZA JRNL TITL 2 HEMAGGLUTININ. JRNL REF PROC.NATL.ACAD.SCI.USA 2019 JRNL REFN ESSN 1091-6490 JRNL PMID 31843892 JRNL DOI 10.1073/PNAS.1915620116 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 27668 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1417 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.3400 - 5.3838 1.00 2808 147 0.1935 0.2383 REMARK 3 2 5.3838 - 4.2740 1.00 2680 152 0.1699 0.1854 REMARK 3 3 4.2740 - 3.7340 1.00 2617 153 0.1913 0.2383 REMARK 3 4 3.7340 - 3.3927 1.00 2605 141 0.2212 0.2804 REMARK 3 5 3.3927 - 3.1495 1.00 2632 133 0.2583 0.3317 REMARK 3 6 3.1495 - 2.9639 1.00 2605 141 0.2700 0.3082 REMARK 3 7 2.9639 - 2.8155 1.00 2580 136 0.2735 0.3330 REMARK 3 8 2.8155 - 2.6929 1.00 2561 158 0.2979 0.3389 REMARK 3 9 2.6929 - 2.5892 1.00 2590 126 0.3063 0.3831 REMARK 3 10 2.5892 - 2.5000 1.00 2573 130 0.3237 0.3516 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 52 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.3297 15.2009 124.0599 REMARK 3 T TENSOR REMARK 3 T11: 0.6713 T22: 1.0501 REMARK 3 T33: 0.8235 T12: -0.0596 REMARK 3 T13: 0.1576 T23: -0.2417 REMARK 3 L TENSOR REMARK 3 L11: 3.9380 L22: 2.2522 REMARK 3 L33: 6.4121 L12: 1.9628 REMARK 3 L13: 4.8909 L23: 3.0207 REMARK 3 S TENSOR REMARK 3 S11: 0.0060 S12: -1.2813 S13: 1.0847 REMARK 3 S21: 0.1296 S22: -0.3843 S23: 0.5464 REMARK 3 S31: -0.4813 S32: -1.6263 S33: 0.3911 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 87 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.4323 5.4016 118.9849 REMARK 3 T TENSOR REMARK 3 T11: 0.9260 T22: 1.1577 REMARK 3 T33: 0.7442 T12: -0.1907 REMARK 3 T13: 0.3287 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 7.1334 L22: 2.1335 REMARK 3 L33: 6.6141 L12: -1.2998 REMARK 3 L13: 6.4368 L23: -2.3886 REMARK 3 S TENSOR REMARK 3 S11: -0.2760 S12: -1.1495 S13: 0.1815 REMARK 3 S21: 1.5890 S22: 0.3436 S23: 1.0735 REMARK 3 S31: -0.6513 S32: -1.5196 S33: -0.3817 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 102 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.7524 4.0705 116.7227 REMARK 3 T TENSOR REMARK 3 T11: 0.6380 T22: 0.7093 REMARK 3 T33: 0.5540 T12: -0.0321 REMARK 3 T13: 0.0385 T23: 0.0590 REMARK 3 L TENSOR REMARK 3 L11: 4.4048 L22: 3.9012 REMARK 3 L33: 3.0204 L12: -0.3914 REMARK 3 L13: 3.5194 L23: 0.5926 REMARK 3 S TENSOR REMARK 3 S11: 0.4565 S12: -0.4118 S13: 0.0672 REMARK 3 S21: 0.2855 S22: -0.1548 S23: -0.0119 REMARK 3 S31: 0.9645 S32: -0.8005 S33: -0.0860 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 136 THROUGH 263 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.6488 -2.3957 111.5553 REMARK 3 T TENSOR REMARK 3 T11: 0.8112 T22: 0.6259 REMARK 3 T33: 0.5222 T12: -0.1291 REMARK 3 T13: -0.0093 T23: 0.1342 REMARK 3 L TENSOR REMARK 3 L11: 4.4612 L22: 2.0967 REMARK 3 L33: 4.6110 L12: 0.7244 REMARK 3 L13: 2.6599 L23: 1.2318 REMARK 3 S TENSOR REMARK 3 S11: 0.7776 S12: -0.2584 S13: -0.3663 REMARK 3 S21: 0.3267 S22: -0.3735 S23: -0.1549 REMARK 3 S31: 1.2349 S32: -0.4233 S33: -0.4001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5003 -7.8876 68.7094 REMARK 3 T TENSOR REMARK 3 T11: 0.5525 T22: 0.6348 REMARK 3 T33: 0.5766 T12: 0.0958 REMARK 3 T13: -0.0174 T23: 0.0458 REMARK 3 L TENSOR REMARK 3 L11: 3.5970 L22: 4.4186 REMARK 3 L33: 5.5048 L12: -0.9417 REMARK 3 L13: 0.5824 L23: -0.1635 REMARK 3 S TENSOR REMARK 3 S11: -0.6639 S12: -0.0542 S13: -0.1877 REMARK 3 S21: -0.0604 S22: 0.2793 S23: 0.0030 REMARK 3 S31: 0.1649 S32: 0.8315 S33: 0.3403 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 18 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.2706 -4.8990 77.6157 REMARK 3 T TENSOR REMARK 3 T11: 0.5677 T22: 0.5837 REMARK 3 T33: 0.5121 T12: -0.0767 REMARK 3 T13: -0.0750 T23: 0.0791 REMARK 3 L TENSOR REMARK 3 L11: 1.6524 L22: 1.5367 REMARK 3 L33: 4.2469 L12: -0.7605 REMARK 3 L13: -2.0103 L23: 1.9594 REMARK 3 S TENSOR REMARK 3 S11: -0.0624 S12: -0.3691 S13: -0.2446 REMARK 3 S21: 0.4509 S22: 0.1694 S23: 0.0281 REMARK 3 S31: 0.6561 S32: 0.0137 S33: -0.0866 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 137 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1151 13.1398 45.0662 REMARK 3 T TENSOR REMARK 3 T11: 0.6029 T22: 0.4720 REMARK 3 T33: 0.5275 T12: -0.1796 REMARK 3 T13: -0.0418 T23: -0.0233 REMARK 3 L TENSOR REMARK 3 L11: 3.0206 L22: 2.7240 REMARK 3 L33: 4.6230 L12: -1.5062 REMARK 3 L13: 1.8877 L23: 1.6519 REMARK 3 S TENSOR REMARK 3 S11: 0.1156 S12: -0.0966 S13: 0.9444 REMARK 3 S21: -0.5163 S22: -0.4901 S23: 0.8072 REMARK 3 S31: -0.8694 S32: 1.0918 S33: 0.0654 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 152 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8810 5.1919 52.8855 REMARK 3 T TENSOR REMARK 3 T11: 0.3620 T22: 0.2268 REMARK 3 T33: 0.3145 T12: -0.0013 REMARK 3 T13: -0.0440 T23: -0.0387 REMARK 3 L TENSOR REMARK 3 L11: 5.2343 L22: 4.5802 REMARK 3 L33: 2.9308 L12: 2.6556 REMARK 3 L13: 0.1862 L23: 1.0805 REMARK 3 S TENSOR REMARK 3 S11: -0.0574 S12: 0.0997 S13: 0.0080 REMARK 3 S21: -0.1174 S22: 0.0399 S23: -0.0166 REMARK 3 S31: 0.0528 S32: 0.1058 S33: 0.0162 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 2 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.7468 16.2353 81.6221 REMARK 3 T TENSOR REMARK 3 T11: 0.4086 T22: 0.6106 REMARK 3 T33: 0.4498 T12: -0.1115 REMARK 3 T13: -0.0022 T23: -0.0705 REMARK 3 L TENSOR REMARK 3 L11: 2.7472 L22: 5.1945 REMARK 3 L33: 5.4011 L12: -1.4143 REMARK 3 L13: 2.3301 L23: -0.2225 REMARK 3 S TENSOR REMARK 3 S11: -0.0240 S12: -0.4399 S13: 0.2224 REMARK 3 S21: 0.4213 S22: -0.0173 S23: -0.0395 REMARK 3 S31: -0.5763 S32: -0.2391 S33: 0.0634 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 75 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5017 13.3207 64.9712 REMARK 3 T TENSOR REMARK 3 T11: 0.3575 T22: 0.4552 REMARK 3 T33: 0.4857 T12: -0.0223 REMARK 3 T13: -0.0510 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 2.0789 L22: 0.5168 REMARK 3 L33: 4.3453 L12: 0.2290 REMARK 3 L13: -2.2080 L23: -0.5184 REMARK 3 S TENSOR REMARK 3 S11: 0.0195 S12: -0.1401 S13: 0.0284 REMARK 3 S21: -0.0629 S22: -0.0303 S23: 0.1611 REMARK 3 S31: 0.0083 S32: -0.2132 S33: -0.0298 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 133 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.0245 17.8757 43.5140 REMARK 3 T TENSOR REMARK 3 T11: 0.5336 T22: 0.3334 REMARK 3 T33: 0.5632 T12: -0.0610 REMARK 3 T13: -0.0072 T23: 0.0378 REMARK 3 L TENSOR REMARK 3 L11: 2.9821 L22: 7.3609 REMARK 3 L33: 5.4901 L12: -0.8911 REMARK 3 L13: -1.2302 L23: 1.4488 REMARK 3 S TENSOR REMARK 3 S11: 0.0425 S12: 0.1982 S13: 0.1459 REMARK 3 S21: 0.1439 S22: 0.1190 S23: 0.5428 REMARK 3 S31: 0.0241 S32: -0.2093 S33: -0.1231 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Q0L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1000243396. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27683 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 49.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.07530 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.3400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.00200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM AMMONIUM SULFATE, 20% (W/V) PEG REMARK 280 4000, 100 MM CHES, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.79500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 95.67000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.14000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 95.67000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.79500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.14000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 264 REMARK 465 GLY A 265 REMARK 465 SER A 266 REMARK 465 GLY A 267 REMARK 465 ALA A 268 REMARK 465 LEU A 269 REMARK 465 GLU A 270 REMARK 465 VAL A 271 REMARK 465 LEU A 272 REMARK 465 PHE A 273 REMARK 465 GLN A 274 REMARK 465 ASP H 234 REMARK 465 LYS H 235 REMARK 465 HIS H 236 REMARK 465 HIS H 237 REMARK 465 HIS H 238 REMARK 465 HIS H 239 REMARK 465 HIS H 240 REMARK 465 HIS H 241 REMARK 465 ALA L -1 REMARK 465 SER L 0 REMARK 465 SER L 1 REMARK 465 SER L 215 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N LYS L 169 O HOH L 401 1.85 REMARK 500 O THR H 148 O HOH H 501 1.86 REMARK 500 OG SER H 204 O HOH H 502 1.98 REMARK 500 OE1 GLU A 116 O HOH A 401 2.04 REMARK 500 O HOH H 512 O HOH H 517 2.06 REMARK 500 O SER A 145 O HOH A 402 2.06 REMARK 500 CD GLU A 116 O HOH A 401 2.12 REMARK 500 O ASP L 154 O HOH L 402 2.15 REMARK 500 OG SER H 147 O HOH H 503 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 58 4.77 -69.84 REMARK 500 SER A 73 -124.05 62.51 REMARK 500 SER A 125 -147.44 -118.29 REMARK 500 SER A 126 -45.30 60.64 REMARK 500 THR A 133 34.33 -76.81 REMARK 500 CYS A 139 55.99 -118.95 REMARK 500 SER A 210 117.67 -162.50 REMARK 500 ILE H 49 -60.25 -97.82 REMARK 500 ASP H 161 65.36 62.33 REMARK 500 ASN L 51 31.16 -143.28 REMARK 500 ALA L 83 -175.53 -170.63 REMARK 500 HIS L 96 64.99 60.22 REMARK 500 ASP L 154 -101.38 56.08 REMARK 500 ASN L 173 -11.55 79.31 REMARK 500 REMARK 500 REMARK: NULL DBREF 6Q0L A 52 267 UNP B4UPF7 B4UPF7_9INFA 65 280 DBREF 6Q0L H 1 241 PDB 6Q0L 6Q0L 1 241 DBREF 6Q0L L -1 215 PDB 6Q0L 6Q0L -1 215 SEQADV 6Q0L ALA A 268 UNP B4UPF7 EXPRESSION TAG SEQADV 6Q0L LEU A 269 UNP B4UPF7 EXPRESSION TAG SEQADV 6Q0L GLU A 270 UNP B4UPF7 EXPRESSION TAG SEQADV 6Q0L VAL A 271 UNP B4UPF7 EXPRESSION TAG SEQADV 6Q0L LEU A 272 UNP B4UPF7 EXPRESSION TAG SEQADV 6Q0L PHE A 273 UNP B4UPF7 EXPRESSION TAG SEQADV 6Q0L GLN A 274 UNP B4UPF7 EXPRESSION TAG SEQRES 1 A 223 ALA PRO LEU GLN LEU GLY ASN CYS SER VAL ALA GLY TRP SEQRES 2 A 223 ILE LEU GLY ASN PRO GLU CYS GLU SER LEU ILE SER LYS SEQRES 3 A 223 GLU SER TRP SER TYR ILE VAL GLU THR PRO ASN PRO GLU SEQRES 4 A 223 ASN GLY THR CYS TYR PRO GLY TYR PHE ALA ASP TYR GLU SEQRES 5 A 223 GLU LEU ARG GLU GLN LEU SER SER VAL SER SER PHE GLU SEQRES 6 A 223 ARG PHE GLU ILE PHE PRO LYS GLU SER SER TRP PRO ASN SEQRES 7 A 223 HIS THR VAL THR GLY VAL THR ALA SER CYS SER HIS ASN SEQRES 8 A 223 GLY LYS SER SER PHE TYR ARG ASN LEU LEU TRP LEU THR SEQRES 9 A 223 GLU LYS ASN GLY LEU TYR PRO ASN LEU SER ASN SER TYR SEQRES 10 A 223 VAL ASN ASN LYS GLU LYS GLU VAL LEU VAL LEU TRP GLY SEQRES 11 A 223 VAL HIS HIS PRO SER ASN ILE ARG ASP GLN ARG ALA ILE SEQRES 12 A 223 TYR HIS THR GLU ASN ALA TYR VAL SER VAL VAL SER SER SEQRES 13 A 223 HIS TYR SER ARG ARG PHE THR PRO GLU ILE ALA LYS ARG SEQRES 14 A 223 PRO LYS VAL ARG GLY GLN GLU GLY ARG ILE ASN TYR TYR SEQRES 15 A 223 TRP THR LEU LEU GLU PRO GLY ASP THR ILE ILE PHE GLU SEQRES 16 A 223 ALA ASN GLY ASN LEU ILE ALA PRO TRP TYR ALA PHE ALA SEQRES 17 A 223 LEU SER ARG GLY PHE GLY SER GLY ALA LEU GLU VAL LEU SEQRES 18 A 223 PHE GLN SEQRES 1 H 241 GLN VAL GLN LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 H 241 PRO SER GLY THR LEU SER LEU THR CYS ALA VAL SER GLY SEQRES 3 H 241 GLY SER ILE SER SER SER ASN TRP TRP SER TRP VAL ARG SEQRES 4 H 241 GLN PRO PRO GLY LYS GLY LEU GLU TRP ILE GLY GLU ILE SEQRES 5 H 241 TYR HIS GLY GLY SER THR ASN TYR ASN PRO SER LEU LYS SEQRES 6 H 241 SER ARG VAL THR ILE SER VAL ASP LYS SER LYS ASN GLN SEQRES 7 H 241 PHE SER LEU LYS LEU SER SER VAL THR ALA ALA ASP THR SEQRES 8 H 241 ALA VAL TYR TYR CYS ALA ARG ALA PRO PRO TYR CYS THR SEQRES 9 H 241 SER ALA SER CYS PRO ASP ASP TYR TYR TYR TYR TYR MET SEQRES 10 H 241 ASP VAL TRP GLY LYS GLY THR THR VAL THR VAL SER GLY SEQRES 11 H 241 ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SEQRES 12 H 241 SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU GLY SEQRES 13 H 241 CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SEQRES 14 H 241 SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR SEQRES 15 H 241 PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SEQRES 16 H 241 SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR SEQRES 17 H 241 GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN SEQRES 18 H 241 THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SER CYS ASP SEQRES 19 H 241 LYS HIS HIS HIS HIS HIS HIS SEQRES 1 L 217 ALA SER SER SER GLU LEU THR GLN ASP PRO ALA VAL SER SEQRES 2 L 217 VAL ALA LEU GLY GLN THR VAL ARG ILE THR CYS GLN GLY SEQRES 3 L 217 ASP SER LEU ARG GLY TYR TYR ALA SER TRP TYR GLN GLN SEQRES 4 L 217 LYS PRO GLY GLN ALA PRO VAL LEU VAL ILE TYR GLY LYS SEQRES 5 L 217 ASN ASN ARG PRO SER GLY ILE PRO ASP ARG PHE SER GLY SEQRES 6 L 217 SER SER SER GLY ASN THR ALA SER LEU THR ILE THR GLY SEQRES 7 L 217 ALA GLN ALA GLU ASP GLU ALA ASP TYR TYR CYS ASN SER SEQRES 8 L 217 ARG ASP SER SER GLY ASN HIS PRO VAL VAL PHE GLY GLY SEQRES 9 L 217 GLY THR LYS LEU THR VAL LEU GLY GLN PRO LYS GLY ALA SEQRES 10 L 217 PRO SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU SEQRES 11 L 217 GLN ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP SEQRES 12 L 217 PHE TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SEQRES 13 L 217 SER SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SEQRES 14 L 217 SER LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR SEQRES 15 L 217 LEU SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER SEQRES 16 L 217 TYR SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU SEQRES 17 L 217 LYS THR VAL ALA PRO THR GLU CYS SER HET NAG A 301 14 HET NAG A 302 14 HET GOL H 401 6 HET GOL H 402 6 HET GOL L 301 6 HET GOL L 302 6 HET GOL L 303 6 HET GOL L 304 6 HET GOL L 305 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 NAG 2(C8 H15 N O6) FORMUL 6 GOL 7(C3 H8 O3) FORMUL 13 HOH *49(H2 O) HELIX 1 AA1 SER A 60 GLY A 67 1 8 HELIX 2 AA2 ASN A 68 GLU A 72 5 5 HELIX 3 AA3 PRO A 89 THR A 93 5 5 HELIX 4 AA4 ASP A 101 LEU A 109 1 9 HELIX 5 AA5 ASN A 187 HIS A 196 1 10 HELIX 6 AA6 PRO H 62 LYS H 65 5 4 HELIX 7 AA7 THR H 87 THR H 91 5 5 HELIX 8 AA8 PRO H 109 TYR H 114 5 6 HELIX 9 AA9 SER H 173 ALA H 175 5 3 HELIX 10 AB1 SER H 204 LEU H 206 5 3 HELIX 11 AB2 LYS H 218 ASN H 221 5 4 HELIX 12 AB3 GLN L 78 GLU L 82 5 5 HELIX 13 AB4 SER L 124 ALA L 130 1 7 HELIX 14 AB5 THR L 184 HIS L 191 1 8 SHEET 1 AA1 2 LEU A 54 GLN A 55 0 SHEET 2 AA1 2 ILE A 83 VAL A 84 1 O VAL A 84 N LEU A 54 SHEET 1 AA2 5 GLU A 116 GLU A 119 0 SHEET 2 AA2 5 TYR A 256 LEU A 260 -1 O ALA A 257 N PHE A 118 SHEET 3 AA2 5 GLU A 175 HIS A 184 -1 N LEU A 177 O PHE A 258 SHEET 4 AA2 5 LEU A 251 PRO A 254 -1 O ILE A 252 N GLY A 181 SHEET 5 AA2 5 LEU A 151 TRP A 153 -1 N LEU A 152 O ALA A 253 SHEET 1 AA3 4 GLU A 116 GLU A 119 0 SHEET 2 AA3 4 TYR A 256 LEU A 260 -1 O ALA A 257 N PHE A 118 SHEET 3 AA3 4 GLU A 175 HIS A 184 -1 N LEU A 177 O PHE A 258 SHEET 4 AA3 4 ARG A 229 LEU A 237 -1 O LEU A 237 N VAL A 176 SHEET 1 AA4 2 THR A 136 HIS A 141 0 SHEET 2 AA4 2 LYS A 144 SER A 146 -1 O LYS A 144 N HIS A 141 SHEET 1 AA5 4 LEU A 164 VAL A 169 0 SHEET 2 AA5 4 THR A 242 ALA A 247 -1 O ALA A 247 N LEU A 164 SHEET 3 AA5 4 VAL A 202 VAL A 205 -1 N SER A 203 O GLU A 246 SHEET 4 AA5 4 SER A 210 PHE A 213 -1 O ARG A 211 N VAL A 204 SHEET 1 AA6 4 GLN H 3 SER H 7 0 SHEET 2 AA6 4 LEU H 18 SER H 25 -1 O THR H 21 N SER H 7 SHEET 3 AA6 4 GLN H 78 LEU H 83 -1 O LEU H 83 N LEU H 18 SHEET 4 AA6 4 VAL H 68 ASP H 73 -1 N ASP H 73 O GLN H 78 SHEET 1 AA7 6 LEU H 11 VAL H 12 0 SHEET 2 AA7 6 THR H 124 VAL H 128 1 O THR H 127 N VAL H 12 SHEET 3 AA7 6 ALA H 92 ALA H 99 -1 N TYR H 94 O THR H 124 SHEET 4 AA7 6 TRP H 34 GLN H 40 -1 N VAL H 38 O TYR H 95 SHEET 5 AA7 6 GLU H 47 TYR H 53 -1 O ILE H 49 N TRP H 37 SHEET 6 AA7 6 SER H 57 TYR H 60 -1 O SER H 57 N TYR H 53 SHEET 1 AA8 4 LEU H 11 VAL H 12 0 SHEET 2 AA8 4 THR H 124 VAL H 128 1 O THR H 127 N VAL H 12 SHEET 3 AA8 4 ALA H 92 ALA H 99 -1 N TYR H 94 O THR H 124 SHEET 4 AA8 4 VAL H 119 TRP H 120 -1 O VAL H 119 N ARG H 98 SHEET 1 AA9 4 SER H 137 LEU H 141 0 SHEET 2 AA9 4 THR H 152 TYR H 162 -1 O LEU H 158 N PHE H 139 SHEET 3 AA9 4 TYR H 193 PRO H 202 -1 O VAL H 201 N ALA H 153 SHEET 4 AA9 4 VAL H 180 THR H 182 -1 N HIS H 181 O VAL H 198 SHEET 1 AB1 4 SER H 137 LEU H 141 0 SHEET 2 AB1 4 THR H 152 TYR H 162 -1 O LEU H 158 N PHE H 139 SHEET 3 AB1 4 TYR H 193 PRO H 202 -1 O VAL H 201 N ALA H 153 SHEET 4 AB1 4 VAL H 186 LEU H 187 -1 N VAL H 186 O SER H 194 SHEET 1 AB2 3 THR H 168 TRP H 171 0 SHEET 2 AB2 3 ILE H 212 HIS H 217 -1 O ASN H 214 N SER H 170 SHEET 3 AB2 3 THR H 222 ARG H 227 -1 O VAL H 224 N VAL H 215 SHEET 1 AB3 4 LEU L 4 GLN L 6 0 SHEET 2 AB3 4 VAL L 18 GLY L 24 -1 O GLN L 23 N THR L 5 SHEET 3 AB3 4 THR L 69 ILE L 74 -1 O LEU L 72 N ILE L 20 SHEET 4 AB3 4 PHE L 61 SER L 65 -1 N SER L 64 O SER L 71 SHEET 1 AB4 5 ALA L 9 ALA L 13 0 SHEET 2 AB4 5 THR L 104 LEU L 109 1 O LEU L 109 N VAL L 12 SHEET 3 AB4 5 ASP L 84 ARG L 90 -1 N TYR L 85 O THR L 104 SHEET 4 AB4 5 SER L 33 GLN L 37 -1 N GLN L 37 O ASP L 84 SHEET 5 AB4 5 VAL L 44 ILE L 47 -1 O ILE L 47 N TRP L 34 SHEET 1 AB5 4 ALA L 9 ALA L 13 0 SHEET 2 AB5 4 THR L 104 LEU L 109 1 O LEU L 109 N VAL L 12 SHEET 3 AB5 4 ASP L 84 ARG L 90 -1 N TYR L 85 O THR L 104 SHEET 4 AB5 4 VAL L 98 PHE L 100 -1 O VAL L 99 N SER L 89 SHEET 1 AB6 4 SER L 117 PHE L 121 0 SHEET 2 AB6 4 ALA L 133 PHE L 142 -1 O VAL L 136 N PHE L 121 SHEET 3 AB6 4 TYR L 175 LEU L 183 -1 O ALA L 177 N ILE L 139 SHEET 4 AB6 4 VAL L 162 THR L 164 -1 N GLU L 163 O TYR L 180 SHEET 1 AB7 4 SER L 117 PHE L 121 0 SHEET 2 AB7 4 ALA L 133 PHE L 142 -1 O VAL L 136 N PHE L 121 SHEET 3 AB7 4 TYR L 175 LEU L 183 -1 O ALA L 177 N ILE L 139 SHEET 4 AB7 4 SER L 168 LYS L 169 -1 N SER L 168 O ALA L 176 SHEET 1 AB8 4 SER L 156 VAL L 158 0 SHEET 2 AB8 4 THR L 148 ALA L 153 -1 N ALA L 153 O SER L 156 SHEET 3 AB8 4 TYR L 194 HIS L 200 -1 O GLN L 197 N ALA L 150 SHEET 4 AB8 4 SER L 203 VAL L 209 -1 O VAL L 205 N VAL L 198 SSBOND 1 CYS A 59 CYS A 71 1555 1555 2.04 SSBOND 2 CYS A 94 CYS A 139 1555 1555 2.04 SSBOND 3 CYS H 22 CYS H 96 1555 1555 2.03 SSBOND 4 CYS H 103 CYS H 108 1555 1555 2.04 SSBOND 5 CYS H 157 CYS H 213 1555 1555 2.03 SSBOND 6 CYS H 233 CYS L 214 1555 1555 2.03 SSBOND 7 CYS L 22 CYS L 87 1555 1555 2.03 SSBOND 8 CYS L 137 CYS L 196 1555 1555 2.03 LINK ND2 ASN A 58 C1 NAG A 301 1555 1555 1.44 LINK ND2 ASN A 163 C1 NAG A 302 1555 1555 1.44 CISPEP 1 PHE H 163 PRO H 164 0 -0.80 CISPEP 2 GLU H 165 PRO H 166 0 -3.10 CISPEP 3 TYR L 143 PRO L 144 0 1.10 CRYST1 57.590 70.280 191.340 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017364 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014229 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005226 0.00000