HEADER OXIDOREDUCTASE 06-AUG-19 6Q1Y TITLE CRYSTAL STRUCTURE OF ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE FROM TITLE 2 MYCOBACTERIUM AVIUM WITH BOUND NAD COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH]; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MYAVA.00170.A.B1; COMPND 5 EC: 1.3.1.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM AVIUM (STRAIN 104); SOURCE 3 ORGANISM_TAXID: 243243; SOURCE 4 STRAIN: 104; SOURCE 5 GENE: MAV_3294; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS SSGCID, ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE, NAD, OXIDOREDUCTASE, KEYWDS 2 STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 11-OCT-23 6Q1Y 1 REMARK REVDAT 1 14-AUG-19 6Q1Y 0 JRNL AUTH C.T.ROMANAGGI,S.J.MAYCLIN,D.M.DRANOW,D.D.LORIMER, JRNL AUTH 2 P.S.HORANYI,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE JRNL TITL 2 FROM MYCOBACTERIUM AVIUM WITH BOUND NAD JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_3584: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 45601 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.143 REMARK 3 R VALUE (WORKING SET) : 0.142 REMARK 3 FREE R VALUE : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.410 REMARK 3 FREE R VALUE TEST SET COUNT : 2009 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.2750 - 3.9758 0.99 3365 146 0.1400 0.1618 REMARK 3 2 3.9758 - 3.1561 1.00 3203 146 0.1315 0.1552 REMARK 3 3 3.1561 - 2.7572 1.00 3165 139 0.1439 0.1640 REMARK 3 4 2.7572 - 2.5052 1.00 3109 145 0.1437 0.1744 REMARK 3 5 2.5052 - 2.3256 1.00 3098 153 0.1398 0.1703 REMARK 3 6 2.3256 - 2.1885 1.00 3133 133 0.1403 0.1757 REMARK 3 7 2.1885 - 2.0789 1.00 3098 117 0.1350 0.1710 REMARK 3 8 2.0789 - 1.9884 1.00 3063 158 0.1461 0.1761 REMARK 3 9 1.9884 - 1.9119 1.00 3070 152 0.1498 0.1667 REMARK 3 10 1.9119 - 1.8459 1.00 3055 153 0.1414 0.1895 REMARK 3 11 1.8459 - 1.7882 1.00 3066 148 0.1487 0.1784 REMARK 3 12 1.7882 - 1.7371 1.00 3034 156 0.1580 0.1765 REMARK 3 13 1.7371 - 1.6913 1.00 3079 130 0.1626 0.2140 REMARK 3 14 1.6913 - 1.6501 1.00 3054 133 0.1682 0.2045 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2990 -37.2635 -17.2295 REMARK 3 T TENSOR REMARK 3 T11: 0.1038 T22: 0.2691 REMARK 3 T33: 0.1762 T12: 0.0087 REMARK 3 T13: -0.0023 T23: 0.0474 REMARK 3 L TENSOR REMARK 3 L11: 1.2539 L22: 1.7762 REMARK 3 L33: 1.2140 L12: 0.3642 REMARK 3 L13: 0.4336 L23: 0.2742 REMARK 3 S TENSOR REMARK 3 S11: -0.0374 S12: 0.0613 S13: 0.0261 REMARK 3 S21: 0.0135 S22: 0.0094 S23: -0.2029 REMARK 3 S31: -0.0109 S32: 0.2942 S33: 0.0159 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 68 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.7012 -27.8968 -29.6383 REMARK 3 T TENSOR REMARK 3 T11: 0.1480 T22: 0.3531 REMARK 3 T33: 0.2568 T12: -0.0890 REMARK 3 T13: -0.0103 T23: 0.1113 REMARK 3 L TENSOR REMARK 3 L11: 7.2418 L22: 2.5552 REMARK 3 L33: 8.0358 L12: -3.9796 REMARK 3 L13: -5.1575 L23: 3.8430 REMARK 3 S TENSOR REMARK 3 S11: 0.0836 S12: 0.3291 S13: 0.4218 REMARK 3 S21: -0.2278 S22: -0.0606 S23: -0.4789 REMARK 3 S31: -0.3381 S32: 0.3939 S33: -0.0243 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 158 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.9468 -30.2829 -20.9562 REMARK 3 T TENSOR REMARK 3 T11: 0.1265 T22: 0.1774 REMARK 3 T33: 0.1572 T12: -0.0131 REMARK 3 T13: -0.0270 T23: 0.0354 REMARK 3 L TENSOR REMARK 3 L11: 1.4505 L22: 0.8392 REMARK 3 L33: 0.8665 L12: -0.3819 REMARK 3 L13: -0.0746 L23: 0.1376 REMARK 3 S TENSOR REMARK 3 S11: -0.0531 S12: -0.0304 S13: 0.1145 REMARK 3 S21: 0.0112 S22: -0.0078 S23: -0.0990 REMARK 3 S31: -0.0711 S32: 0.1345 S33: 0.0408 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 159 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.9315 -34.0765 -19.5480 REMARK 3 T TENSOR REMARK 3 T11: 0.1259 T22: 0.1639 REMARK 3 T33: 0.1718 T12: 0.0004 REMARK 3 T13: -0.0031 T23: 0.0275 REMARK 3 L TENSOR REMARK 3 L11: 0.9547 L22: 0.6516 REMARK 3 L33: 0.7883 L12: -0.1583 REMARK 3 L13: -0.0806 L23: 0.1811 REMARK 3 S TENSOR REMARK 3 S11: 0.0100 S12: 0.0010 S13: 0.1129 REMARK 3 S21: -0.0313 S22: -0.0363 S23: -0.0205 REMARK 3 S31: -0.0704 S32: 0.0629 S33: 0.0149 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 209 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.0511 -36.6441 -1.2449 REMARK 3 T TENSOR REMARK 3 T11: 0.1003 T22: 0.2191 REMARK 3 T33: 0.1435 T12: 0.0092 REMARK 3 T13: -0.0072 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 3.2863 L22: 6.3421 REMARK 3 L33: 9.1312 L12: 3.8958 REMARK 3 L13: 3.7477 L23: 7.1571 REMARK 3 S TENSOR REMARK 3 S11: 0.0318 S12: -0.1949 S13: 0.0819 REMARK 3 S21: 0.1204 S22: -0.2452 S23: 0.0562 REMARK 3 S31: -0.0988 S32: -0.0687 S33: 0.2043 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 226 THROUGH 269 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.5070 -47.1411 -16.4318 REMARK 3 T TENSOR REMARK 3 T11: 0.1144 T22: 0.1212 REMARK 3 T33: 0.1327 T12: 0.0260 REMARK 3 T13: -0.0043 T23: 0.0199 REMARK 3 L TENSOR REMARK 3 L11: 1.7718 L22: 1.0061 REMARK 3 L33: 2.4945 L12: -0.2605 REMARK 3 L13: -0.8205 L23: 0.2640 REMARK 3 S TENSOR REMARK 3 S11: -0.0519 S12: -0.1034 S13: -0.0026 REMARK 3 S21: 0.1059 S22: 0.0008 S23: -0.0353 REMARK 3 S31: 0.0384 S32: 0.1373 S33: 0.0508 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Q1Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1000243494. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45632 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 41.275 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 17.61 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 32.4100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.89 REMARK 200 R MERGE FOR SHELL (I) : 0.55100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.990 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: 2H7I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MYAVA.00170.A.B1.PS38585 @ 20.93 REMARK 280 MG/ML, INCUBATED WITH 5 MM NAD, MIXED 0.4UL PROTEIN LIGAND REMARK 280 COMPLEX + 0.4UL JCSG+ (D10): 40% (V/V) PEG300, 100 MM SODIUM REMARK 280 CACODYLATE/ HCL PH 6.5, 200 MM CALCIUM ACETATE. TRAY ID: 310540 REMARK 280 D10, PUCK: IXZ5-8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.06000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.53000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 93.06000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 46.53000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 93.06000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 46.53000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 93.06000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 46.53000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 O3 PG4 A 306 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 488 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 532 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 697 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 57 CG CD CE NZ REMARK 470 GLU A 84 CG CD OE1 OE2 REMARK 470 GLU A 114 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 549 O HOH A 595 2.04 REMARK 500 O HOH A 563 O HOH A 636 2.11 REMARK 500 O HOH A 412 O HOH A 442 2.12 REMARK 500 O HOH A 549 O HOH A 696 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 432 O HOH A 519 4445 2.04 REMARK 500 O HOH A 409 O HOH A 422 4445 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 16 -33.96 -132.23 REMARK 500 ASP A 42 -59.35 73.61 REMARK 500 ALA A 124 -56.41 -124.92 REMARK 500 ASN A 159 -121.98 47.50 REMARK 500 ALA A 260 74.43 -112.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 306 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-MYAVA.00170.A RELATED DB: TARGETTRACK DBREF1 6Q1Y A 1 269 UNP A0A0H2ZSV5_MYCA1 DBREF2 6Q1Y A A0A0H2ZSV5 1 269 SEQADV 6Q1Y MET A -7 UNP A0A0H2ZSV INITIATING METHIONINE SEQADV 6Q1Y ALA A -6 UNP A0A0H2ZSV EXPRESSION TAG SEQADV 6Q1Y HIS A -5 UNP A0A0H2ZSV EXPRESSION TAG SEQADV 6Q1Y HIS A -4 UNP A0A0H2ZSV EXPRESSION TAG SEQADV 6Q1Y HIS A -3 UNP A0A0H2ZSV EXPRESSION TAG SEQADV 6Q1Y HIS A -2 UNP A0A0H2ZSV EXPRESSION TAG SEQADV 6Q1Y HIS A -1 UNP A0A0H2ZSV EXPRESSION TAG SEQADV 6Q1Y HIS A 0 UNP A0A0H2ZSV EXPRESSION TAG SEQRES 1 A 277 MET ALA HIS HIS HIS HIS HIS HIS MET ALA GLY LEU LEU SEQRES 2 A 277 ASP GLY LYS ARG ILE LEU VAL THR GLY ILE ILE THR ASP SEQRES 3 A 277 SER SER ILE ALA PHE HIS ILE ALA LYS VAL ALA GLN GLU SEQRES 4 A 277 ALA GLY ALA GLN LEU VAL LEU THR GLY PHE ASP ARG LEU SEQRES 5 A 277 ARG LEU ILE GLN ARG ILE VAL ASP ARG LEU PRO GLU LYS SEQRES 6 A 277 ALA PRO LEU ILE GLU LEU ASP VAL GLN ASN GLU GLU HIS SEQRES 7 A 277 LEU ASN THR LEU ALA GLN ARG VAL THR ALA GLU ILE GLY SEQRES 8 A 277 GLU GLY ASN LYS LEU ASP GLY VAL VAL HIS SER ILE GLY SEQRES 9 A 277 PHE MET PRO GLN THR GLY MET GLY ILE ASN PRO PHE PHE SEQRES 10 A 277 ASP ALA PRO TYR GLU ASP VAL SER LYS GLY ILE HIS ILE SEQRES 11 A 277 SER ALA TYR SER TYR ALA SER LEU ALA LYS ALA LEU LEU SEQRES 12 A 277 PRO ILE MET ASN PRO GLY GLY SER ILE VAL GLY MET ASP SEQRES 13 A 277 PHE ASP PRO SER ARG ALA MET PRO ALA TYR ASN TRP MET SEQRES 14 A 277 THR VAL ALA LYS SER ALA LEU GLU SER VAL ASN ARG PHE SEQRES 15 A 277 VAL ALA ARG GLU ALA GLY PRO HIS GLY VAL ARG SER ASN SEQRES 16 A 277 LEU VAL ALA ALA GLY PRO ILE ARG THR LEU ALA MET ALA SEQRES 17 A 277 GLY ILE VAL GLY GLY VAL LEU GLY ASP GLN ALA ALA GLU SEQRES 18 A 277 GLN ILE ARG LEU LEU GLU GLU GLY TRP ASP GLN ARG ALA SEQRES 19 A 277 PRO ILE GLY TRP ASN MET LYS ASP PRO THR PRO VAL ALA SEQRES 20 A 277 LYS THR VAL CYS ALA LEU LEU SER ASP TRP LEU PRO ALA SEQRES 21 A 277 THR THR GLY THR ILE ILE TYR ALA ASP GLY GLY ALA SER SEQRES 22 A 277 THR GLN LEU LEU HET NAD A 301 44 HET ACT A 302 4 HET PEG A 303 7 HET EDO A 304 4 HET PG4 A 305 13 HET PG4 A 306 13 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM ACT ACETATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETNAM PG4 TETRAETHYLENE GLYCOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NAD C21 H27 N7 O14 P2 FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 PEG C4 H10 O3 FORMUL 5 EDO C2 H6 O2 FORMUL 6 PG4 2(C8 H18 O5) FORMUL 8 HOH *343(H2 O) HELIX 1 AA1 SER A 20 ALA A 32 1 13 HELIX 2 AA2 ARG A 43 ASP A 52 1 10 HELIX 3 AA3 ASN A 67 THR A 73 1 7 HELIX 4 AA4 THR A 73 GLY A 83 1 11 HELIX 5 AA5 PRO A 99 MET A 103 5 5 HELIX 6 AA6 PRO A 107 ALA A 111 5 5 HELIX 7 AA7 PRO A 112 ALA A 124 1 13 HELIX 8 AA8 ALA A 124 LEU A 135 1 12 HELIX 9 AA9 ASN A 159 GLY A 180 1 22 HELIX 10 AB1 PRO A 181 GLY A 183 5 3 HELIX 11 AB2 THR A 196 GLY A 205 1 10 HELIX 12 AB3 GLY A 208 ALA A 226 1 19 HELIX 13 AB4 PRO A 235 SER A 247 1 13 HELIX 14 AB5 GLY A 263 GLN A 267 5 5 SHEET 1 AA1 7 LEU A 60 GLU A 62 0 SHEET 2 AA1 7 GLN A 35 GLY A 40 1 N LEU A 38 O ILE A 61 SHEET 3 AA1 7 ARG A 9 VAL A 12 1 N VAL A 12 O VAL A 37 SHEET 4 AA1 7 LEU A 88 HIS A 93 1 O ASP A 89 N ARG A 9 SHEET 5 AA1 7 MET A 138 ASP A 148 1 O VAL A 145 N HIS A 93 SHEET 6 AA1 7 ARG A 185 ALA A 191 1 O VAL A 189 N ASP A 148 SHEET 7 AA1 7 ILE A 257 ALA A 260 1 O ILE A 258 N LEU A 188 SITE 1 AC1 38 GLY A 14 ILE A 15 ILE A 16 SER A 20 SITE 2 AC1 38 ILE A 21 PHE A 41 LEU A 63 ASP A 64 SITE 3 AC1 38 VAL A 65 SER A 94 ILE A 95 GLY A 96 SITE 4 AC1 38 ILE A 122 MET A 147 ASP A 148 PHE A 149 SITE 5 AC1 38 LYS A 165 ALA A 191 GLY A 192 PRO A 193 SITE 6 AC1 38 ILE A 194 THR A 196 HOH A 435 HOH A 448 SITE 7 AC1 38 HOH A 452 HOH A 456 HOH A 462 HOH A 465 SITE 8 AC1 38 HOH A 489 HOH A 523 HOH A 527 HOH A 549 SITE 9 AC1 38 HOH A 565 HOH A 570 HOH A 584 HOH A 595 SITE 10 AC1 38 HOH A 614 HOH A 635 SITE 1 AC2 5 ASP A 52 LEU A 54 GLU A 56 LYS A 57 SITE 2 AC2 5 HOH A 406 SITE 1 AC3 6 PHE A 109 ASP A 110 TYR A 125 LYS A 132 SITE 2 AC3 6 HOH A 447 HOH A 536 SITE 1 AC4 3 VAL A 206 GLY A 208 HOH A 414 SITE 1 AC5 6 LEU A 197 GLY A 204 VAL A 206 HOH A 408 SITE 2 AC5 6 HOH A 449 HOH A 576 SITE 1 AC6 3 LYS A 233 ASP A 234 HOH A 427 CRYST1 95.320 95.320 139.590 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010491 0.006057 0.000000 0.00000 SCALE2 0.000000 0.012114 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007164 0.00000