HEADER TRANSCRIPTION 07-AUG-19 6Q2B TITLE CRYSTAL STRUCTURE OF PUTATIVE MARR FAMILY TRANSCRIPTIONAL REGULATOR TITLE 2 FROM LISTERIA MONOCYTOGENES COMPLEXED WITH 26MER DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: MARR FAMILY TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (26-MER); COMPND 7 CHAIN: C, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 3 ORGANISM_TAXID: 1639; SOURCE 4 GENE: ARS86_10905, D3B94_03315; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: GOLD; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 13 ORGANISM_TAXID: 1639 KEYWDS MARR, TRANSCRIPTION FACTOR, WHTH, STRUCTURAL GENOMICS, PSI-BIOLOGY, KEYWDS 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,C.TESAR,S.CLANCY,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 4 15-NOV-23 6Q2B 1 REMARK REVDAT 3 11-OCT-23 6Q2B 1 REMARK REVDAT 2 01-JAN-20 6Q2B 1 REMARK REVDAT 1 21-AUG-19 6Q2B 0 JRNL AUTH Y.KIM,C.TESAR,S.CLANCY,A.JOACHIMIAK, JRNL AUTH 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE MARR FAMILY TRANSCRIPTIONAL JRNL TITL 2 REGULATOR FROM LISTERIA MONOCYTOGENES COMPLEXED WITH 26MER JRNL TITL 3 DNA. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 18636 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 954 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.0000 - 5.1900 0.99 2671 178 0.1817 0.1930 REMARK 3 2 5.1900 - 4.1200 1.00 2681 157 0.2028 0.2311 REMARK 3 3 4.1200 - 3.6000 0.99 2655 154 0.2449 0.2921 REMARK 3 4 3.6000 - 3.2700 0.99 2715 112 0.2659 0.2922 REMARK 3 5 3.2700 - 3.0400 0.99 2669 141 0.2810 0.3011 REMARK 3 6 3.0400 - 2.8600 0.90 2445 120 0.3859 0.4656 REMARK 3 7 2.8600 - 2.7200 0.68 1846 92 0.4497 0.4244 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.560 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 41.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 71.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 107.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3646 REMARK 3 ANGLE : 0.556 5118 REMARK 3 CHIRALITY : 0.035 584 REMARK 3 PLANARITY : 0.002 468 REMARK 3 DIHEDRAL : 24.861 2058 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 21 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 61 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): 101.2431 24.1939 57.7534 REMARK 3 T TENSOR REMARK 3 T11: 2.0055 T22: 1.6588 REMARK 3 T33: 0.5860 T12: 0.8359 REMARK 3 T13: -0.6498 T23: -0.4102 REMARK 3 L TENSOR REMARK 3 L11: 4.1183 L22: 0.3753 REMARK 3 L33: 2.2481 L12: -0.1940 REMARK 3 L13: 1.3058 L23: -0.8901 REMARK 3 S TENSOR REMARK 3 S11: 0.6854 S12: 0.1618 S13: -0.4684 REMARK 3 S21: -0.0194 S22: -0.4974 S23: -0.1713 REMARK 3 S31: 1.1721 S32: 1.4005 S33: -0.4127 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 81 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 104.8491 30.6900 55.7577 REMARK 3 T TENSOR REMARK 3 T11: 1.2547 T22: 2.2323 REMARK 3 T33: 0.5711 T12: 0.5604 REMARK 3 T13: -0.1784 T23: -0.2453 REMARK 3 L TENSOR REMARK 3 L11: 1.1016 L22: 2.3108 REMARK 3 L33: 5.9578 L12: -0.0171 REMARK 3 L13: 2.1842 L23: -1.9796 REMARK 3 S TENSOR REMARK 3 S11: 0.0801 S12: 0.5534 S13: -0.2370 REMARK 3 S21: -0.0283 S22: 0.0865 S23: -0.4559 REMARK 3 S31: 0.3271 S32: 1.4719 S33: -0.1132 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 101 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): 91.4802 42.7060 43.4003 REMARK 3 T TENSOR REMARK 3 T11: 0.8107 T22: 1.7901 REMARK 3 T33: 0.5798 T12: 0.0410 REMARK 3 T13: -0.0077 T23: -0.1413 REMARK 3 L TENSOR REMARK 3 L11: 6.7893 L22: 6.2471 REMARK 3 L33: 5.4800 L12: -6.5115 REMARK 3 L13: 6.0978 L23: -5.8514 REMARK 3 S TENSOR REMARK 3 S11: -0.4089 S12: -0.0078 S13: 0.1733 REMARK 3 S21: -0.2706 S22: 0.1227 S23: -0.6649 REMARK 3 S31: -0.5738 S32: -0.0725 S33: 0.2331 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 111 THROUGH 140 ) REMARK 3 ORIGIN FOR THE GROUP (A): 85.3736 50.7667 57.8033 REMARK 3 T TENSOR REMARK 3 T11: 0.4288 T22: 0.7133 REMARK 3 T33: 0.3613 T12: -0.1864 REMARK 3 T13: 0.0167 T23: -0.0198 REMARK 3 L TENSOR REMARK 3 L11: 2.5945 L22: 8.4089 REMARK 3 L33: 6.4473 L12: -0.3226 REMARK 3 L13: 2.5876 L23: 0.4437 REMARK 3 S TENSOR REMARK 3 S11: -0.3985 S12: 0.0948 S13: -0.0151 REMARK 3 S21: -0.3418 S22: 0.0433 S23: -0.7787 REMARK 3 S31: -1.2669 S32: 0.6467 S33: 0.2194 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 141 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): 78.9500 36.1264 75.7113 REMARK 3 T TENSOR REMARK 3 T11: 1.2476 T22: 1.6385 REMARK 3 T33: 0.5287 T12: -0.0547 REMARK 3 T13: -0.0358 T23: 0.1395 REMARK 3 L TENSOR REMARK 3 L11: 3.3665 L22: 4.7607 REMARK 3 L33: 3.4555 L12: -1.8287 REMARK 3 L13: 2.9812 L23: -2.6774 REMARK 3 S TENSOR REMARK 3 S11: -0.1582 S12: -1.8676 S13: -0.3641 REMARK 3 S21: 2.2776 S22: 0.2261 S23: 0.3790 REMARK 3 S31: 0.0414 S32: -1.0756 S33: -0.1815 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 71.9073 22.2039 41.0521 REMARK 3 T TENSOR REMARK 3 T11: 1.7710 T22: 1.7412 REMARK 3 T33: 0.6694 T12: -0.2461 REMARK 3 T13: -1.1145 T23: -0.0180 REMARK 3 L TENSOR REMARK 3 L11: 0.9735 L22: 1.3902 REMARK 3 L33: 0.1568 L12: -0.2575 REMARK 3 L13: 0.0133 L23: 0.4673 REMARK 3 S TENSOR REMARK 3 S11: 1.1036 S12: 0.8695 S13: -0.6973 REMARK 3 S21: 0.4698 S22: 0.4997 S23: -0.3895 REMARK 3 S31: 1.1562 S32: 0.5930 S33: 0.1448 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 16 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 94.7592 23.2628 75.2573 REMARK 3 T TENSOR REMARK 3 T11: 1.7309 T22: 1.6332 REMARK 3 T33: 0.7588 T12: 0.1772 REMARK 3 T13: -0.8395 T23: 0.0461 REMARK 3 L TENSOR REMARK 3 L11: 6.2500 L22: 1.2681 REMARK 3 L33: 2.5892 L12: 0.4653 REMARK 3 L13: 4.0169 L23: 0.3406 REMARK 3 S TENSOR REMARK 3 S11: 1.2067 S12: -0.6497 S13: -1.4508 REMARK 3 S21: -0.1608 S22: 0.2802 S23: 0.2169 REMARK 3 S31: 1.3231 S32: -0.1623 S33: -1.0583 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 90.0229 22.1890 70.4843 REMARK 3 T TENSOR REMARK 3 T11: 1.7688 T22: 1.5943 REMARK 3 T33: 0.7968 T12: 0.2081 REMARK 3 T13: -1.2298 T23: 0.0758 REMARK 3 L TENSOR REMARK 3 L11: 0.9438 L22: 0.8924 REMARK 3 L33: 0.5215 L12: 0.1652 REMARK 3 L13: -0.4452 L23: -0.6216 REMARK 3 S TENSOR REMARK 3 S11: 1.1708 S12: -0.8095 S13: -0.7723 REMARK 3 S21: -0.5332 S22: 0.6873 S23: 0.0265 REMARK 3 S31: 1.2819 S32: -0.6187 S33: 0.3115 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 16 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 67.0506 23.2422 36.3130 REMARK 3 T TENSOR REMARK 3 T11: 1.7508 T22: 1.3962 REMARK 3 T33: 0.8465 T12: -0.1508 REMARK 3 T13: -0.8325 T23: -0.0635 REMARK 3 L TENSOR REMARK 3 L11: 6.3981 L22: 2.0497 REMARK 3 L33: 2.1234 L12: -1.6207 REMARK 3 L13: 3.6580 L23: -1.0769 REMARK 3 S TENSOR REMARK 3 S11: 1.0717 S12: 0.6518 S13: -1.3972 REMARK 3 S21: -0.1262 S22: 0.6124 S23: 0.0708 REMARK 3 S31: 1.2426 S32: 0.2126 S33: -1.0693 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 84.5989 41.8868 57.6082 REMARK 3 T TENSOR REMARK 3 T11: 0.4008 T22: 0.8369 REMARK 3 T33: 0.2784 T12: -0.0767 REMARK 3 T13: -0.0619 T23: -0.0938 REMARK 3 L TENSOR REMARK 3 L11: 7.5716 L22: 6.7810 REMARK 3 L33: 8.5516 L12: -1.7043 REMARK 3 L13: -2.9420 L23: -3.6658 REMARK 3 S TENSOR REMARK 3 S11: 0.0433 S12: 0.4456 S13: 0.4342 REMARK 3 S21: -0.7963 S22: 0.5082 S23: -0.3063 REMARK 3 S31: 0.6772 S32: -0.0861 S33: -0.4606 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 21 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): 68.9435 31.3732 62.9625 REMARK 3 T TENSOR REMARK 3 T11: 1.3306 T22: 1.3347 REMARK 3 T33: 0.6175 T12: -0.6667 REMARK 3 T13: -0.3441 T23: 0.1764 REMARK 3 L TENSOR REMARK 3 L11: 4.7058 L22: 4.0429 REMARK 3 L33: 2.9024 L12: -0.5567 REMARK 3 L13: 1.6554 L23: 2.2382 REMARK 3 S TENSOR REMARK 3 S11: 0.4062 S12: -0.1243 S13: -0.9324 REMARK 3 S21: 0.4630 S22: 0.3926 S23: -0.5464 REMARK 3 S31: 0.6125 S32: -0.6618 S33: -0.7151 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 41 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.4082 33.7811 48.5884 REMARK 3 T TENSOR REMARK 3 T11: 0.6656 T22: 1.4242 REMARK 3 T33: 0.6062 T12: -0.2979 REMARK 3 T13: -0.2978 T23: 0.2358 REMARK 3 L TENSOR REMARK 3 L11: 4.9661 L22: 8.3438 REMARK 3 L33: 4.7201 L12: 2.0898 REMARK 3 L13: -0.1020 L23: 1.0121 REMARK 3 S TENSOR REMARK 3 S11: 0.6290 S12: -0.3122 S13: -0.2897 REMARK 3 S21: -0.0438 S22: 0.2892 S23: 0.9016 REMARK 3 S31: 1.1338 S32: -0.9034 S33: -0.7289 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 65.8734 22.4708 54.7521 REMARK 3 T TENSOR REMARK 3 T11: 2.1125 T22: 1.0177 REMARK 3 T33: 0.8229 T12: -0.4346 REMARK 3 T13: -0.4531 T23: 0.5377 REMARK 3 L TENSOR REMARK 3 L11: 0.4490 L22: 3.1352 REMARK 3 L33: 4.6563 L12: 0.0140 REMARK 3 L13: 0.1201 L23: -3.8051 REMARK 3 S TENSOR REMARK 3 S11: 0.1000 S12: -0.1815 S13: -0.4013 REMARK 3 S21: 0.5390 S22: 0.3913 S23: 0.7064 REMARK 3 S31: 0.6766 S32: -0.7222 S33: -0.6352 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 71 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.4125 25.5091 52.9835 REMARK 3 T TENSOR REMARK 3 T11: 1.4845 T22: 1.8560 REMARK 3 T33: 0.4624 T12: -1.0088 REMARK 3 T13: -0.3935 T23: 0.3726 REMARK 3 L TENSOR REMARK 3 L11: 0.3009 L22: 0.9799 REMARK 3 L33: 0.9703 L12: -0.5455 REMARK 3 L13: -0.3784 L23: 0.6925 REMARK 3 S TENSOR REMARK 3 S11: 0.0896 S12: 0.0923 S13: -0.0576 REMARK 3 S21: -0.2761 S22: -0.1558 S23: 0.2230 REMARK 3 S31: -0.0329 S32: -0.6897 S33: -0.1627 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 81 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.9243 30.6452 55.8911 REMARK 3 T TENSOR REMARK 3 T11: 1.0759 T22: 2.2009 REMARK 3 T33: 0.5974 T12: -0.5469 REMARK 3 T13: -0.1503 T23: 0.2328 REMARK 3 L TENSOR REMARK 3 L11: 0.7548 L22: 2.2702 REMARK 3 L33: 3.5811 L12: 0.2347 REMARK 3 L13: 1.0853 L23: 2.2990 REMARK 3 S TENSOR REMARK 3 S11: 0.2345 S12: -0.6616 S13: -0.2599 REMARK 3 S21: 0.1427 S22: 0.0885 S23: 0.5672 REMARK 3 S31: 0.4231 S32: -1.3523 S33: -0.3159 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 101 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): 70.1675 42.6420 68.2657 REMARK 3 T TENSOR REMARK 3 T11: 0.9956 T22: 1.7582 REMARK 3 T33: 0.5150 T12: -0.0366 REMARK 3 T13: -0.0632 T23: 0.0288 REMARK 3 L TENSOR REMARK 3 L11: 7.9930 L22: 7.8790 REMARK 3 L33: 5.4054 L12: 7.1209 REMARK 3 L13: 6.0538 L23: 6.4787 REMARK 3 S TENSOR REMARK 3 S11: -0.3073 S12: -0.0862 S13: 0.2366 REMARK 3 S21: 0.5116 S22: -0.0187 S23: 0.3131 REMARK 3 S31: -0.2740 S32: -0.3082 S33: 0.3006 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 111 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): 76.1786 54.8443 59.6190 REMARK 3 T TENSOR REMARK 3 T11: 0.8619 T22: 0.7906 REMARK 3 T33: 0.5015 T12: 0.3221 REMARK 3 T13: -0.0564 T23: -0.0371 REMARK 3 L TENSOR REMARK 3 L11: 4.9149 L22: 7.0587 REMARK 3 L33: 5.4760 L12: 0.9089 REMARK 3 L13: 1.3011 L23: 0.2017 REMARK 3 S TENSOR REMARK 3 S11: -0.2709 S12: -0.1033 S13: 0.6496 REMARK 3 S21: 0.5011 S22: -0.0776 S23: 0.8605 REMARK 3 S31: -1.5661 S32: -0.9587 S33: 0.3146 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 131 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): 79.6783 39.6385 39.4482 REMARK 3 T TENSOR REMARK 3 T11: 0.9592 T22: 1.0385 REMARK 3 T33: 0.4832 T12: 0.0460 REMARK 3 T13: -0.1174 T23: -0.0862 REMARK 3 L TENSOR REMARK 3 L11: 2.7916 L22: 5.3034 REMARK 3 L33: 5.7246 L12: 2.0457 REMARK 3 L13: 1.6128 L23: 1.3495 REMARK 3 S TENSOR REMARK 3 S11: -0.0091 S12: 1.4777 S13: -0.3637 REMARK 3 S21: -1.5415 S22: 0.0062 S23: 0.1502 REMARK 3 S31: -0.2489 S32: 0.0910 S33: -0.0526 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 77.1342 41.7897 54.0483 REMARK 3 T TENSOR REMARK 3 T11: 0.2744 T22: 0.8197 REMARK 3 T33: 0.2960 T12: 0.0932 REMARK 3 T13: -0.0773 T23: 0.1363 REMARK 3 L TENSOR REMARK 3 L11: 6.5637 L22: 7.0604 REMARK 3 L33: 7.3156 L12: 2.9322 REMARK 3 L13: -1.2214 L23: 2.6666 REMARK 3 S TENSOR REMARK 3 S11: 0.0639 S12: -0.8497 S13: 0.1396 REMARK 3 S21: 0.8665 S22: 0.3189 S23: 0.2320 REMARK 3 S31: 0.5347 S32: 0.2118 S33: -0.2752 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 21 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): 92.8602 31.4622 48.6065 REMARK 3 T TENSOR REMARK 3 T11: 1.4041 T22: 1.3162 REMARK 3 T33: 0.6100 T12: 0.5688 REMARK 3 T13: -0.2525 T23: -0.1071 REMARK 3 L TENSOR REMARK 3 L11: 4.8960 L22: 3.9218 REMARK 3 L33: 2.6940 L12: 0.7074 REMARK 3 L13: 1.1984 L23: 0.4562 REMARK 3 S TENSOR REMARK 3 S11: 0.0607 S12: 0.0220 S13: -0.5995 REMARK 3 S21: -0.6880 S22: 0.1538 S23: 0.3271 REMARK 3 S31: 0.2024 S32: 0.7656 S33: -0.1458 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 41 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): 95.3121 33.7642 63.0301 REMARK 3 T TENSOR REMARK 3 T11: 0.7886 T22: 1.2652 REMARK 3 T33: 0.4585 T12: 0.1908 REMARK 3 T13: -0.2100 T23: -0.0842 REMARK 3 L TENSOR REMARK 3 L11: 8.1817 L22: 5.7085 REMARK 3 L33: 2.6748 L12: 0.2163 REMARK 3 L13: -0.1812 L23: -0.4631 REMARK 3 S TENSOR REMARK 3 S11: 0.7643 S12: -0.2249 S13: -0.3775 REMARK 3 S21: 0.0393 S22: -0.3957 S23: -0.6010 REMARK 3 S31: 0.8211 S32: 0.5495 S33: -0.2040 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Q2B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1000243510. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97883 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18848 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.720 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 63.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.97600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, MOLREP REMARK 200 STARTING MODEL: PDBID 4MNU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01 M MAGNESIUM ACETATE TETRAHYDRATE, REMARK 280 0.05 M MES MONOHYDRATE PH 5.6, 2.5 M AMMONIUM SULFATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.67000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 133.34000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 100.00500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 166.67500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.33500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 29 -156.36 -81.76 REMARK 500 ILE B 4 -21.97 -145.06 REMARK 500 ALA B 29 -156.86 -83.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MNU RELATED DB: PDB REMARK 900 THE SAME PROTEIN STRUCTURE WITHOUT DNA DBREF1 6Q2B A 1 150 UNP A0A418S1M8_LISMN DBREF2 6Q2B A A0A418S1M8 1 150 DBREF1 6Q2B B 1 150 UNP A0A418S1M8_LISMN DBREF2 6Q2B B A0A418S1M8 1 150 DBREF 6Q2B C 1 26 PDB 6Q2B 6Q2B 1 26 DBREF 6Q2B D 1 26 PDB 6Q2B 6Q2B 1 26 SEQADV 6Q2B SER A -2 UNP A0A418S1M EXPRESSION TAG SEQADV 6Q2B ASN A -1 UNP A0A418S1M EXPRESSION TAG SEQADV 6Q2B ALA A 0 UNP A0A418S1M EXPRESSION TAG SEQADV 6Q2B SER B -2 UNP A0A418S1M EXPRESSION TAG SEQADV 6Q2B ASN B -1 UNP A0A418S1M EXPRESSION TAG SEQADV 6Q2B ALA B 0 UNP A0A418S1M EXPRESSION TAG SEQRES 1 A 153 SER ASN ALA MSE LYS ASP ILE LEU ARG ASP ILE GLY VAL SEQRES 2 A 153 ILE ALA ARG ALA LEU ASP SER ILE SER ASN ILE GLU PHE SEQRES 3 A 153 LYS GLU LEU ASN LEU ALA LYS GLY GLN PHE ILE TYR LEU SEQRES 4 A 153 VAL ARG ILE CYS GLU ASN GLN GLY ILE ILE GLN GLU LYS SEQRES 5 A 153 LEU VAL ASP ILE LEU LYS ILE ASP ARG THR THR ALA SER SEQRES 6 A 153 ARG ALA ILE LYS ASN LEU GLU LYS ASN GLY LEU ILE ILE SEQRES 7 A 153 LYS LYS GLN ASN LYS ASN ASN LYS LYS ASN LYS LEU LEU SEQRES 8 A 153 PHE PRO THR GLU LYS GLY GLN GLN LEU TYR PRO LEU ILE SEQRES 9 A 153 ILE ARG GLU ASN GLU TYR SER ASN ALA VAL ALA LEU LYS SEQRES 10 A 153 GLY PHE THR GLU ALA GLU ILE ASN MSE LEU THR ASP ALA SEQRES 11 A 153 LEU LYS LYS VAL LYS GLU ASN ILE ALA ASP ASP TRP LEU SEQRES 12 A 153 TYR VAL LYS LYS GLY ASN LYS ARG SER TYR SEQRES 1 B 153 SER ASN ALA MSE LYS ASP ILE LEU ARG ASP ILE GLY VAL SEQRES 2 B 153 ILE ALA ARG ALA LEU ASP SER ILE SER ASN ILE GLU PHE SEQRES 3 B 153 LYS GLU LEU ASN LEU ALA LYS GLY GLN PHE ILE TYR LEU SEQRES 4 B 153 VAL ARG ILE CYS GLU ASN GLN GLY ILE ILE GLN GLU LYS SEQRES 5 B 153 LEU VAL ASP ILE LEU LYS ILE ASP ARG THR THR ALA SER SEQRES 6 B 153 ARG ALA ILE LYS ASN LEU GLU LYS ASN GLY LEU ILE ILE SEQRES 7 B 153 LYS LYS GLN ASN LYS ASN ASN LYS LYS ASN LYS LEU LEU SEQRES 8 B 153 PHE PRO THR GLU LYS GLY GLN GLN LEU TYR PRO LEU ILE SEQRES 9 B 153 ILE ARG GLU ASN GLU TYR SER ASN ALA VAL ALA LEU LYS SEQRES 10 B 153 GLY PHE THR GLU ALA GLU ILE ASN MSE LEU THR ASP ALA SEQRES 11 B 153 LEU LYS LYS VAL LYS GLU ASN ILE ALA ASP ASP TRP LEU SEQRES 12 B 153 TYR VAL LYS LYS GLY ASN LYS ARG SER TYR SEQRES 1 C 26 DC DC DT DA DT DT DG DT DT DG DC DA DA SEQRES 2 C 26 DT DT DG DC DA DA DC DA DA DT DA DG DG SEQRES 1 D 26 DC DC DT DA DT DT DG DT DT DG DC DA DA SEQRES 2 D 26 DT DT DG DC DA DA DC DA DA DT DA DG DG MODRES 6Q2B MSE A 1 MET MODIFIED RESIDUE MODRES 6Q2B MSE A 123 MET MODIFIED RESIDUE MODRES 6Q2B MSE B 1 MET MODIFIED RESIDUE MODRES 6Q2B MSE B 123 MET MODIFIED RESIDUE HET MSE A 1 8 HET MSE A 123 8 HET MSE B 1 8 HET MSE B 123 8 HET ACY A 201 4 HET ACY B 201 4 HETNAM MSE SELENOMETHIONINE HETNAM ACY ACETIC ACID FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 5 ACY 2(C2 H4 O2) FORMUL 7 HOH *12(H2 O) HELIX 1 AA1 ILE A 4 GLU A 25 1 22 HELIX 2 AA2 GLN A 32 ASN A 42 1 11 HELIX 3 AA3 ILE A 46 LYS A 55 1 10 HELIX 4 AA4 ASP A 57 ASN A 71 1 15 HELIX 5 AA5 THR A 91 LEU A 113 1 23 HELIX 6 AA6 THR A 117 ILE A 135 1 19 HELIX 7 AA7 ILE A 135 GLY A 145 1 11 HELIX 8 AA8 ILE B 4 LYS B 24 1 21 HELIX 9 AA9 GLU B 25 ASN B 27 5 3 HELIX 10 AB1 GLN B 32 ASN B 42 1 11 HELIX 11 AB2 ILE B 46 LYS B 55 1 10 HELIX 12 AB3 ASP B 57 ASN B 71 1 15 HELIX 13 AB4 THR B 91 LEU B 113 1 23 HELIX 14 AB5 THR B 117 GLY B 145 1 29 SHEET 1 AA1 2 ILE A 74 GLN A 78 0 SHEET 2 AA1 2 LYS A 86 PRO A 90 -1 O PHE A 89 N ILE A 75 SHEET 1 AA2 2 ILE B 74 ASN B 79 0 SHEET 2 AA2 2 ASN B 82 PRO B 90 -1 O PHE B 89 N ILE B 75 LINK C MSE A 1 N LYS A 2 1555 1555 1.33 LINK C ASN A 122 N MSE A 123 1555 1555 1.33 LINK C MSE A 123 N LEU A 124 1555 1555 1.33 LINK C MSE B 1 N LYS B 2 1555 1555 1.33 LINK C ASN B 122 N MSE B 123 1555 1555 1.33 LINK C MSE B 123 N LEU B 124 1555 1555 1.33 SITE 1 AC1 3 ARG A 63 LYS A 66 DT C 9 SITE 1 AC2 3 ARG B 63 LYS B 66 DT D 9 CRYST1 80.859 80.859 200.010 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012367 0.007140 0.000000 0.00000 SCALE2 0.000000 0.014280 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005000 0.00000 HETATM 1 N MSE A 1 94.055 53.103 45.598 1.00125.90 N ANISOU 1 N MSE A 1 13153 18406 16277 -52 5089 2574 N HETATM 2 CA MSE A 1 93.037 53.396 46.600 1.00132.20 C ANISOU 2 CA MSE A 1 13930 19053 17245 -245 4788 2406 C HETATM 3 C MSE A 1 93.135 52.445 47.793 1.00129.61 C ANISOU 3 C MSE A 1 13444 18874 16927 -380 4442 1875 C HETATM 4 O MSE A 1 93.716 51.364 47.690 1.00127.46 O ANISOU 4 O MSE A 1 13230 18883 16314 -240 4358 1656 O HETATM 5 CB MSE A 1 91.640 53.326 45.979 1.00128.72 C ANISOU 5 CB MSE A 1 13897 18840 16170 -24 4636 2716 C HETATM 6 CG MSE A 1 91.459 52.201 44.974 1.00129.54 C ANISOU 6 CG MSE A 1 14411 19448 15362 259 4538 2767 C HETATM 7 SE MSE A 1 89.583 51.847 44.574 0.61128.49 SE ANISOU 7 SE MSE A 1 14702 19741 14376 371 4056 2981 SE HETATM 8 CE MSE A 1 89.024 53.640 44.047 1.00127.70 C ANISOU 8 CE MSE A 1 14465 19293 14764 480 4356 3650 C