HEADER HYDROLASE 03-DEC-18 6Q2Y TITLE CRYSTAL STRUCTURE OF NDM-1 BETA-LACTAMASE IN COMPLEX WITH BROAD TITLE 2 SPECTRUM BORONIC INHIBITOR CPD3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLO-BETA-LACTAMASE TYPE 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: B2 METALLO-BETA-LACTAMASE,BETA-LACTAMASE TYPE II,METALLO- COMPND 5 BETA-LACTAMASE NDM-1,METALLO-BETA-LACTAMASE TYPE II,NEW DELHI COMPND 6 METALLO-BETA-LACTAMASE-1,NDM-1; COMPND 7 EC: 3.5.2.6; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: MISSING RESIDES CORRESPOND TO UNOBSERVED REGIONS. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: BLANDM-1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA-LACTAMASE; BACTERIAL RESISTANCE; ACYCLIC BORONIC INHIBITORS, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.MASO,A.QUOTADAMO,P.BELLIO,M.MONTANARI,A.VENTURELLI,G.CELENZA, AUTHOR 2 M.P.COSTI,D.TONDI,L.CENDRON REVDAT 3 24-JAN-24 6Q2Y 1 LINK REVDAT 2 01-MAY-19 6Q2Y 1 JRNL REVDAT 1 24-APR-19 6Q2Y 0 JRNL AUTH L.CENDRON,A.QUOTADAMO,L.MASO,P.BELLIO,M.MONTANARI,G.CELENZA, JRNL AUTH 2 A.VENTURELLI,M.P.COSTI,D.TONDI JRNL TITL X-RAY CRYSTALLOGRAPHY DECIPHERS THE ACTIVITY OF JRNL TITL 2 BROAD-SPECTRUM BORONIC ACID BETA-LACTAMASE INHIBITORS. JRNL REF ACS MED.CHEM.LETT. V. 10 650 2019 JRNL REFN ISSN 1948-5875 JRNL PMID 30996812 JRNL DOI 10.1021/ACSMEDCHEMLETT.8B00607 REMARK 2 REMARK 2 RESOLUTION. 1.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 201126 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 11074 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 11248 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 74.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE SET COUNT : 635 REMARK 3 BIN FREE R VALUE : 0.2480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3420 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 286 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 7.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05000 REMARK 3 B22 (A**2) : -0.05000 REMARK 3 B33 (A**2) : 0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.025 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.025 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.016 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.306 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3701 ; 0.015 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5066 ; 1.987 ; 1.642 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 496 ; 6.459 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 173 ;31.589 ;23.121 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 567 ;13.564 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;19.970 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 493 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2887 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1912 ; 1.259 ; 0.821 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2411 ; 1.895 ; 1.236 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1789 ; 2.132 ; 1.054 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5626 ; 3.949 ;11.870 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Q2Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1200013181. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 212200 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.000 REMARK 200 RESOLUTION RANGE LOW (A) : 53.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.37700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.150 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5GZU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.3 M MGCL2 EXAHYDRATE; 0.3 M CACL2 REMARK 280 DIHYDRATE; 25% W/V PEG 3350; 25% W/V MPD; 20% V/V PEG 1000; 0.1 REMARK 280 M MES/IMIDAZOLE, PH 6.3, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.21250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.84350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.97500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.84350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.21250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.97500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 27 REMARK 465 PRO A 28 REMARK 465 GLY A 29 REMARK 465 GLU A 30 REMARK 465 ILE A 31 REMARK 465 ARG A 32 REMARK 465 PRO A 33 REMARK 465 THR A 34 REMARK 465 ILE A 35 REMARK 465 GLY A 36 REMARK 465 GLN A 37 REMARK 465 GLN A 38 REMARK 465 MET A 39 REMARK 465 MET B 27 REMARK 465 PRO B 28 REMARK 465 GLY B 29 REMARK 465 GLU B 30 REMARK 465 ILE B 31 REMARK 465 ARG B 32 REMARK 465 PRO B 33 REMARK 465 THR B 34 REMARK 465 ILE B 35 REMARK 465 GLY B 36 REMARK 465 GLN B 37 REMARK 465 GLN B 38 REMARK 465 PRO B 68 REMARK 465 GLY B 69 REMARK 465 PHE B 70 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 85 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 90 141.58 76.38 REMARK 500 ASP B 90 143.69 78.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG B 85 12.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 95 OD2 REMARK 620 2 ASP A 130 OD2 104.7 REMARK 620 3 HOH A 434 O 85.4 149.0 REMARK 620 4 HOH A 468 O 72.9 70.4 140.2 REMARK 620 5 HOH A 496 O 84.2 76.6 75.4 132.7 REMARK 620 6 HOH A 504 O 93.9 129.4 77.7 71.1 153.1 REMARK 620 7 HOH A 518 O 162.4 89.1 77.2 123.1 88.5 85.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 120 NE2 REMARK 620 2 HIS A 122 ND1 100.3 REMARK 620 3 HIS A 189 NE2 100.2 118.2 REMARK 620 4 HCQ A 305 O09 110.8 104.6 120.8 REMARK 620 5 HCQ A 305 O07 168.0 89.2 81.5 59.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 124 OD2 REMARK 620 2 CYS A 208 SG 107.1 REMARK 620 3 HIS A 250 NE2 93.3 113.5 REMARK 620 4 HCQ A 305 O08 108.5 125.2 104.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 152 OE1 REMARK 620 2 GLU A 152 OE2 50.6 REMARK 620 3 ASP A 223 OD1 126.7 123.4 REMARK 620 4 ASP A 223 OD2 80.7 84.3 48.4 REMARK 620 5 HOH A 516 O 79.6 129.7 77.9 80.7 REMARK 620 6 GLU B 227 OE1 133.6 84.4 65.0 84.4 140.5 REMARK 620 7 GLU B 227 OE2 116.7 77.8 110.7 133.5 142.1 51.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 227 OE1 REMARK 620 2 GLU A 227 OE2 50.7 REMARK 620 3 HOH A 463 O 120.4 70.5 REMARK 620 4 GLU B 152 OE1 132.6 116.2 78.1 REMARK 620 5 GLU B 152 OE2 82.7 76.4 93.4 51.3 REMARK 620 6 ASP B 223 OD1 62.9 107.9 143.8 128.7 122.0 REMARK 620 7 ASP B 223 OD2 82.1 130.3 156.9 82.5 84.0 48.3 REMARK 620 8 HOH B 517 O 82.0 76.7 75.6 144.4 153.0 69.1 115.6 REMARK 620 9 HOH B 522 O 141.2 144.6 82.9 79.1 129.7 80.0 81.2 74.2 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 95 OD2 REMARK 620 2 ASP B 130 OD2 98.8 REMARK 620 3 HOH B 457 O 85.7 157.1 REMARK 620 4 HOH B 493 O 88.8 79.5 78.1 REMARK 620 5 HOH B 529 O 165.5 94.2 79.8 87.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 120 NE2 REMARK 620 2 HIS B 122 ND1 99.9 REMARK 620 3 HIS B 189 NE2 99.3 117.7 REMARK 620 4 HCQ B 305 O07 172.6 86.1 81.5 REMARK 620 5 HCQ B 305 O08 103.0 102.2 129.6 71.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 124 OD2 REMARK 620 2 CYS B 208 SG 107.7 REMARK 620 3 HIS B 250 NE2 93.3 113.7 REMARK 620 4 HCQ B 305 O09 107.6 127.1 102.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HCQ A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HCQ B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE B 306 DBREF 6Q2Y A 27 270 UNP C7C422 BLAN1_KLEPN 27 270 DBREF 6Q2Y B 27 270 UNP C7C422 BLAN1_KLEPN 27 270 SEQRES 1 A 244 MET PRO GLY GLU ILE ARG PRO THR ILE GLY GLN GLN MET SEQRES 2 A 244 GLU THR GLY ASP GLN ARG PHE GLY ASP LEU VAL PHE ARG SEQRES 3 A 244 GLN LEU ALA PRO ASN VAL TRP GLN HIS THR SER TYR LEU SEQRES 4 A 244 ASP MET PRO GLY PHE GLY ALA VAL ALA SER ASN GLY LEU SEQRES 5 A 244 ILE VAL ARG ASP GLY GLY ARG VAL LEU VAL VAL ASP THR SEQRES 6 A 244 ALA TRP THR ASP ASP GLN THR ALA GLN ILE LEU ASN TRP SEQRES 7 A 244 ILE LYS GLN GLU ILE ASN LEU PRO VAL ALA LEU ALA VAL SEQRES 8 A 244 VAL THR HIS ALA HIS GLN ASP LYS MET GLY GLY MET ASP SEQRES 9 A 244 ALA LEU HIS ALA ALA GLY ILE ALA THR TYR ALA ASN ALA SEQRES 10 A 244 LEU SER ASN GLN LEU ALA PRO GLN GLU GLY MET VAL ALA SEQRES 11 A 244 ALA GLN HIS SER LEU THR PHE ALA ALA ASN GLY TRP VAL SEQRES 12 A 244 GLU PRO ALA THR ALA PRO ASN PHE GLY PRO LEU LYS VAL SEQRES 13 A 244 PHE TYR PRO GLY PRO GLY HIS THR SER ASP ASN ILE THR SEQRES 14 A 244 VAL GLY ILE ASP GLY THR ASP ILE ALA PHE GLY GLY CYS SEQRES 15 A 244 LEU ILE LYS ASP SER LYS ALA LYS SER LEU GLY ASN LEU SEQRES 16 A 244 GLY ASP ALA ASP THR GLU HIS TYR ALA ALA SER ALA ARG SEQRES 17 A 244 ALA PHE GLY ALA ALA PHE PRO LYS ALA SER MET ILE VAL SEQRES 18 A 244 MET SER HIS SER ALA PRO ASP SER ARG ALA ALA ILE THR SEQRES 19 A 244 HIS THR ALA ARG MET ALA ASP LYS LEU ARG SEQRES 1 B 244 MET PRO GLY GLU ILE ARG PRO THR ILE GLY GLN GLN MET SEQRES 2 B 244 GLU THR GLY ASP GLN ARG PHE GLY ASP LEU VAL PHE ARG SEQRES 3 B 244 GLN LEU ALA PRO ASN VAL TRP GLN HIS THR SER TYR LEU SEQRES 4 B 244 ASP MET PRO GLY PHE GLY ALA VAL ALA SER ASN GLY LEU SEQRES 5 B 244 ILE VAL ARG ASP GLY GLY ARG VAL LEU VAL VAL ASP THR SEQRES 6 B 244 ALA TRP THR ASP ASP GLN THR ALA GLN ILE LEU ASN TRP SEQRES 7 B 244 ILE LYS GLN GLU ILE ASN LEU PRO VAL ALA LEU ALA VAL SEQRES 8 B 244 VAL THR HIS ALA HIS GLN ASP LYS MET GLY GLY MET ASP SEQRES 9 B 244 ALA LEU HIS ALA ALA GLY ILE ALA THR TYR ALA ASN ALA SEQRES 10 B 244 LEU SER ASN GLN LEU ALA PRO GLN GLU GLY MET VAL ALA SEQRES 11 B 244 ALA GLN HIS SER LEU THR PHE ALA ALA ASN GLY TRP VAL SEQRES 12 B 244 GLU PRO ALA THR ALA PRO ASN PHE GLY PRO LEU LYS VAL SEQRES 13 B 244 PHE TYR PRO GLY PRO GLY HIS THR SER ASP ASN ILE THR SEQRES 14 B 244 VAL GLY ILE ASP GLY THR ASP ILE ALA PHE GLY GLY CYS SEQRES 15 B 244 LEU ILE LYS ASP SER LYS ALA LYS SER LEU GLY ASN LEU SEQRES 16 B 244 GLY ASP ALA ASP THR GLU HIS TYR ALA ALA SER ALA ARG SEQRES 17 B 244 ALA PHE GLY ALA ALA PHE PRO LYS ALA SER MET ILE VAL SEQRES 18 B 244 MET SER HIS SER ALA PRO ASP SER ARG ALA ALA ILE THR SEQRES 19 B 244 HIS THR ALA ARG MET ALA ASP LYS LEU ARG HET ZN A 301 1 HET ZN A 302 1 HET CA A 303 1 HET CA A 304 1 HET HCQ A 305 15 HET ZN B 301 1 HET ZN B 302 1 HET CA B 303 1 HET CA B 304 1 HET HCQ B 305 15 HET EPE B 306 15 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM HCQ [5-(AMINOMETHYL)-1-BENZOTHIOPHEN-2-YL]-TRIS(OXIDANYL) HETNAM 2 HCQ BORANUIDE HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EPE HEPES FORMUL 3 ZN 4(ZN 2+) FORMUL 5 CA 4(CA 2+) FORMUL 7 HCQ 2(C9 H11 B N O3 S 1-) FORMUL 13 EPE C8 H18 N2 O4 S FORMUL 14 HOH *286(H2 O) HELIX 1 AA1 THR A 94 ILE A 109 1 16 HELIX 2 AA2 HIS A 122 GLY A 127 1 6 HELIX 3 AA3 GLY A 128 ALA A 135 1 8 HELIX 4 AA4 ALA A 143 ALA A 149 1 7 HELIX 5 AA5 PRO A 150 GLY A 153 5 4 HELIX 6 AA6 GLU A 170 ALA A 174 5 5 HELIX 7 AA7 HIS A 228 PHE A 240 1 13 HELIX 8 AA8 ARG A 256 LYS A 268 1 13 HELIX 9 AA9 THR B 94 ILE B 109 1 16 HELIX 10 AB1 HIS B 122 GLY B 127 1 6 HELIX 11 AB2 GLY B 128 ALA B 135 1 8 HELIX 12 AB3 ALA B 143 ALA B 149 1 7 HELIX 13 AB4 PRO B 150 GLY B 153 5 4 HELIX 14 AB5 GLU B 170 ALA B 174 5 5 HELIX 15 AB6 HIS B 228 PHE B 240 1 13 HELIX 16 AB7 ARG B 256 LYS B 268 1 13 SHEET 1 AA1 8 GLN A 44 PHE A 46 0 SHEET 2 AA1 8 LEU A 49 ALA A 55 -1 O PHE A 51 N GLN A 44 SHEET 3 AA1 8 VAL A 58 MET A 67 -1 O GLN A 60 N ARG A 52 SHEET 4 AA1 8 GLY A 71 ASP A 82 -1 O GLY A 71 N MET A 67 SHEET 5 AA1 8 ARG A 85 VAL A 89 -1 O LEU A 87 N VAL A 80 SHEET 6 AA1 8 VAL A 113 VAL A 117 1 O VAL A 117 N VAL A 88 SHEET 7 AA1 8 ALA A 138 ASN A 142 1 O ALA A 138 N ALA A 116 SHEET 8 AA1 8 HIS A 159 LEU A 161 1 O LEU A 161 N ALA A 141 SHEET 1 AA2 4 LEU A 180 PHE A 183 0 SHEET 2 AA2 4 THR A 195 ILE A 198 -1 O GLY A 197 N LYS A 181 SHEET 3 AA2 4 ILE A 203 PHE A 205 -1 O PHE A 205 N VAL A 196 SHEET 4 AA2 4 MET A 245 VAL A 247 1 O VAL A 247 N ALA A 204 SHEET 1 AA3 8 ASP B 43 PHE B 46 0 SHEET 2 AA3 8 LEU B 49 ALA B 55 -1 O PHE B 51 N GLN B 44 SHEET 3 AA3 8 VAL B 58 LEU B 65 -1 O GLN B 60 N ARG B 52 SHEET 4 AA3 8 VAL B 73 ASP B 82 -1 O VAL B 73 N LEU B 65 SHEET 5 AA3 8 ARG B 85 VAL B 89 -1 O VAL B 89 N LEU B 78 SHEET 6 AA3 8 VAL B 113 VAL B 117 1 O VAL B 117 N VAL B 88 SHEET 7 AA3 8 ALA B 138 ASN B 142 1 O TYR B 140 N ALA B 116 SHEET 8 AA3 8 HIS B 159 LEU B 161 1 O LEU B 161 N ALA B 141 SHEET 1 AA4 4 LEU B 180 PHE B 183 0 SHEET 2 AA4 4 THR B 195 ILE B 198 -1 O GLY B 197 N LYS B 181 SHEET 3 AA4 4 ILE B 203 PHE B 205 -1 O PHE B 205 N VAL B 196 SHEET 4 AA4 4 MET B 245 VAL B 247 1 O VAL B 247 N ALA B 204 LINK OD2 ASP A 95 CA CA A 304 1555 1555 2.34 LINK NE2 HIS A 120 ZN ZN A 301 1555 1555 2.05 LINK ND1 HIS A 122 ZN ZN A 301 1555 1555 2.01 LINK OD2 ASP A 124 ZN ZN A 302 1555 1555 1.96 LINK OD2 ASP A 130 CA CA A 304 1555 1555 2.37 LINK OE1 GLU A 152 CA CA A 303 1555 1555 2.58 LINK OE2 GLU A 152 CA CA A 303 1555 1555 2.53 LINK NE2 HIS A 189 ZN ZN A 301 1555 1555 1.99 LINK SG CYS A 208 ZN ZN A 302 1555 1555 2.27 LINK OD1 ASP A 223 CA CA A 303 1555 1555 2.89 LINK OD2 ASP A 223 CA CA A 303 1555 1555 2.43 LINK OE1 GLU A 227 CA CA B 303 1555 1555 2.54 LINK OE2 GLU A 227 CA CA B 303 1555 1555 2.52 LINK NE2 HIS A 250 ZN ZN A 302 1555 1555 2.00 LINK ZN ZN A 301 O09 HCQ A 305 1555 1555 1.91 LINK ZN ZN A 301 O07 HCQ A 305 1555 1555 2.69 LINK ZN ZN A 302 O08 HCQ A 305 1555 1555 1.95 LINK CA CA A 303 O HOH A 516 1555 1555 2.46 LINK CA CA A 303 OE1 GLU B 227 1555 1555 2.49 LINK CA CA A 303 OE2 GLU B 227 1555 1555 2.51 LINK CA CA A 304 O HOH A 434 1555 1555 2.41 LINK CA CA A 304 O HOH A 468 1555 1555 2.52 LINK CA CA A 304 O HOH A 496 1555 1555 2.54 LINK CA CA A 304 O HOH A 504 1555 2454 2.45 LINK CA CA A 304 O HOH A 518 1555 1555 2.38 LINK O HOH A 463 CA CA B 303 1555 1555 2.34 LINK OD2 ASP B 95 CA CA B 304 1555 1555 2.36 LINK NE2 HIS B 120 ZN ZN B 301 1555 1555 2.03 LINK ND1 HIS B 122 ZN ZN B 301 1555 1555 2.01 LINK OD2 ASP B 124 ZN ZN B 302 1555 1555 1.96 LINK OD2 ASP B 130 CA CA B 304 1555 1555 2.47 LINK OE1 GLU B 152 CA CA B 303 1555 1555 2.55 LINK OE2 GLU B 152 CA CA B 303 1555 1555 2.51 LINK NE2 HIS B 189 ZN ZN B 301 1555 1555 1.99 LINK SG CYS B 208 ZN ZN B 302 1555 1555 2.28 LINK OD1 ASP B 223 CA CA B 303 1555 1555 2.89 LINK OD2 ASP B 223 CA CA B 303 1555 1555 2.38 LINK NE2 HIS B 250 ZN ZN B 302 1555 1555 2.00 LINK ZN ZN B 301 O07 HCQ B 305 1555 1555 2.59 LINK ZN ZN B 301 O08 HCQ B 305 1555 1555 2.01 LINK ZN ZN B 302 O09 HCQ B 305 1555 1555 1.91 LINK CA CA B 303 O HOH B 517 1555 1555 2.42 LINK CA CA B 303 O HOH B 522 1555 1555 2.41 LINK CA CA B 304 O HOH B 457 1555 1555 2.46 LINK CA CA B 304 O HOH B 493 1555 1555 2.64 LINK CA CA B 304 O HOH B 529 1555 1555 2.43 SITE 1 AC1 4 HIS A 120 HIS A 122 HIS A 189 HCQ A 305 SITE 1 AC2 4 ASP A 124 CYS A 208 HIS A 250 HCQ A 305 SITE 1 AC3 4 GLU A 152 ASP A 223 HOH A 516 GLU B 227 SITE 1 AC4 7 ASP A 95 ASP A 130 HOH A 434 HOH A 468 SITE 2 AC4 7 HOH A 496 HOH A 504 HOH A 518 SITE 1 AC5 12 LEU A 65 MET A 67 TRP A 93 HIS A 120 SITE 2 AC5 12 HIS A 122 GLN A 123 ASP A 124 HIS A 189 SITE 3 AC5 12 ASN A 220 HIS A 250 ZN A 301 ZN A 302 SITE 1 AC6 4 HIS B 120 HIS B 122 HIS B 189 HCQ B 305 SITE 1 AC7 4 ASP B 124 CYS B 208 HIS B 250 HCQ B 305 SITE 1 AC8 6 GLU A 227 HOH A 463 GLU B 152 ASP B 223 SITE 2 AC8 6 HOH B 517 HOH B 522 SITE 1 AC9 5 ASP B 95 ASP B 130 HOH B 457 HOH B 493 SITE 2 AC9 5 HOH B 529 SITE 1 AD1 12 MET B 67 TRP B 93 HIS B 120 HIS B 122 SITE 2 AD1 12 GLN B 123 ASP B 124 HIS B 189 ASN B 220 SITE 3 AD1 12 HIS B 250 ZN B 301 ZN B 302 HOH B 518 SITE 1 AD2 6 GLN A 44 GLN A 107 GLU A 108 ARG B 234 SITE 2 AD2 6 THR B 260 ARG B 264 CRYST1 70.425 73.950 77.687 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014200 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013523 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012872 0.00000