HEADER UNKNOWN FUNCTION 03-DEC-18 6Q2Z TITLE NMR SOLUTION STRUCTURE OF THE HVO_2922 PROTEIN FROM HALOFERAX VOLCANII COMPND MOL_ID: 1; COMPND 2 MOLECULE: UPF0339 FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: CONSERVED HYPOTHETICAL PROTEIN HVO_2922 FROM HALOFERAX COMPND 6 VOLCANII SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HALOFERAX VOLCANII (STRAIN ATCC 29605 / DSM SOURCE 3 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2); SOURCE 4 ORGANISM_COMMON: HALOBACTERIUM VOLCANII; SOURCE 5 ORGANISM_TAXID: 309800; SOURCE 6 ATCC: 29605; SOURCE 7 GENE: HVO_2922; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 11 EXPRESSION_SYSTEM_VARIANT: T7-EXPRESS; SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PE-SUMO KEYWDS CONSERVED HYPOTHETICAL PROTEIN, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.KUBATOVA,H.R.A.JONKER,K.SAXENA,C.RICHTER,A.MARCHFELDER,H.SCHWALBE REVDAT 3 14-JUN-23 6Q2Z 1 REMARK REVDAT 2 29-JAN-20 6Q2Z 1 JRNL REVDAT 1 12-JUN-19 6Q2Z 0 JRNL AUTH N.KUBATOVA,H.R.A.JONKER,K.SAXENA,C.RICHTER,V.VOGEL, JRNL AUTH 2 S.SCHREIBER,A.MARCHFELDER,H.SCHWALBE JRNL TITL SOLUTION STRUCTURE AND DYNAMICS OF THE SMALL PROTEIN JRNL TITL 2 HVO_2922 FROM HALOFERAX VOLCANII. JRNL REF CHEMBIOCHEM V. 21 149 2020 JRNL REFN ESSN 1439-7633 JRNL PMID 31161645 JRNL DOI 10.1002/CBIC.201900085 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.97, CNS 1.1, ARIA 1.2 HJ REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ (CNS), REMARK 3 LINGE, O'DONOGHUE AND NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE DETERMINATION REMARK 4 REMARK 4 6Q2Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1200013138. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 232 REMARK 210 PRESSURE : AMBIENT MBAR REMARK 210 SAMPLE CONTENTS : 5.0 MM [U-15N] HVO_2922, 50 MM REMARK 210 SODIUM PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 3 MM DTT, 95% H2O/5% REMARK 210 D2O; 2.0 MM [U-13C; U-15N] HVO_ REMARK 210 2922, 50 MM SODIUM PHOSPHATE, REMARK 210 100 MM SODIUM CHLORIDE, 3 MM DTT, REMARK 210 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-1H NOESY; 2D 1H- REMARK 210 1H TOCSY; 3D 1H-15N NOESY; 3D 1H- REMARK 210 15N TOCSY; 3D HNHA; 2D 1H-15N REMARK 210 HETNOE; 2D 1H-15N T1; 2D 1H-15N REMARK 210 T2; 3D HNCACB; 3D HN(COCA)CB; 3D REMARK 210 HNCO; 3D (H)CC(CO)NH; 3D HCCH- REMARK 210 TOCSY; 3D 1H-13C NOESY ALIPHATIC; REMARK 210 3D 1H-13C TOCSY AROMATIC; 2D REMARK 210 (HB)CB(CGCD)HD; 2D (HB)CB(CGCDCE) REMARK 210 HE REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE BRUKER 600; AVANCE BRUKER REMARK 210 700; AVANCE BRUKER 800 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 3.5, SPARKY 3.114, TALOS REMARK 210 N, TENSOR 2 REMARK 210 METHOD USED : SIMULATED ANNEALING WITH TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL B 248 H ALA B 252 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 114 36.12 71.27 REMARK 500 1 ASN A 151 -39.12 -136.91 REMARK 500 1 HIS B 205 148.16 -170.95 REMARK 500 1 ASP B 214 41.71 70.42 REMARK 500 1 ASN B 251 -37.39 -135.82 REMARK 500 2 ASN A 151 -37.93 -137.03 REMARK 500 2 ASN B 251 -40.09 -136.42 REMARK 500 3 ASN A 151 -39.50 -135.19 REMARK 500 3 ASN B 251 -38.31 -137.01 REMARK 500 4 ASN A 151 -39.33 -133.04 REMARK 500 4 ASN B 251 -37.50 -131.32 REMARK 500 5 ASP A 114 33.36 72.05 REMARK 500 5 ASN A 151 -40.89 -134.34 REMARK 500 5 HIS B 205 148.08 -170.26 REMARK 500 5 ASN B 251 -40.58 -132.71 REMARK 500 6 ASN A 151 -39.58 -132.94 REMARK 500 6 ASN B 251 -40.33 -130.83 REMARK 500 7 HIS A 105 148.79 -170.56 REMARK 500 7 ASP A 114 36.18 71.11 REMARK 500 7 ASN A 151 -37.88 -133.45 REMARK 500 7 HIS B 205 148.61 -170.92 REMARK 500 7 ASP B 214 36.84 70.04 REMARK 500 7 ASN B 251 -37.45 -135.48 REMARK 500 8 ASN A 102 172.27 172.07 REMARK 500 8 ASP A 114 33.17 70.25 REMARK 500 8 HIS B 205 146.38 -170.27 REMARK 500 9 ASN A 102 171.71 170.47 REMARK 500 9 HIS A 105 144.54 -170.10 REMARK 500 9 ASN A 151 -42.42 -137.24 REMARK 500 9 ASN B 251 -37.73 -135.66 REMARK 500 10 ASN A 151 -39.14 -131.58 REMARK 500 10 ASP B 214 36.10 70.17 REMARK 500 11 ASP A 114 35.20 71.10 REMARK 500 11 ASN A 151 -37.77 -135.52 REMARK 500 11 ASP B 214 34.67 71.13 REMARK 500 11 ASN B 251 -39.40 -130.08 REMARK 500 12 ASP A 114 35.18 71.33 REMARK 500 12 ASN A 151 -37.20 -137.04 REMARK 500 12 ASN B 251 -36.36 -135.65 REMARK 500 13 ASP A 114 33.18 70.62 REMARK 500 13 ASN A 151 -40.58 -132.02 REMARK 500 13 HIS B 205 147.59 -170.70 REMARK 500 14 HIS A 105 148.36 -170.53 REMARK 500 14 ASN A 151 -37.53 -131.62 REMARK 500 15 ASN A 151 -37.51 -138.91 REMARK 500 16 HIS A 105 149.41 -172.02 REMARK 500 16 ASP A 114 35.53 71.30 REMARK 500 16 ASN A 151 -39.14 -134.39 REMARK 500 16 HIS B 205 149.94 -170.96 REMARK 500 16 ASP B 214 36.15 70.46 REMARK 500 REMARK 500 THIS ENTRY HAS 68 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34334 RELATED DB: BMRB REMARK 900 NMR SOLUTION STRUCTURE OF THE HVO_2922 PROTEIN FROM HALOFERAX REMARK 900 VOLCANII DBREF 6Q2Z A 101 160 UNP D4GXU1 D4GXU1_HALVD 1 60 DBREF 6Q2Z B 201 260 UNP D4GXU1 D4GXU1_HALVD 1 60 SEQRES 1 A 60 MET ASN LYS ALA HIS PHE GLU VAL PHE VAL ASP ALA ALA SEQRES 2 A 60 ASP LYS TYR ARG TRP ARG LEU VAL HIS ASP ASN GLY ASN SEQRES 3 A 60 ILE LEU ALA ASP SER GLY GLU GLY TYR ALA SER LYS GLN SEQRES 4 A 60 LYS ALA LYS GLN GLY ILE GLU SER VAL LYS ARG ASN ALA SEQRES 5 A 60 PRO ASP ALA ASP VAL ILE GLU ALA SEQRES 1 B 60 MET ASN LYS ALA HIS PHE GLU VAL PHE VAL ASP ALA ALA SEQRES 2 B 60 ASP LYS TYR ARG TRP ARG LEU VAL HIS ASP ASN GLY ASN SEQRES 3 B 60 ILE LEU ALA ASP SER GLY GLU GLY TYR ALA SER LYS GLN SEQRES 4 B 60 LYS ALA LYS GLN GLY ILE GLU SER VAL LYS ARG ASN ALA SEQRES 5 B 60 PRO ASP ALA ASP VAL ILE GLU ALA HELIX 1 AA1 SER A 137 ARG A 150 1 14 HELIX 2 AA2 SER B 237 ARG B 250 1 14 SHEET 1 AA1 4 ILE A 127 ASP A 130 0 SHEET 2 AA1 4 TYR A 116 HIS A 122 -1 N LEU A 120 O LEU A 128 SHEET 3 AA1 4 ALA A 104 VAL A 110 -1 N PHE A 109 O ARG A 117 SHEET 4 AA1 4 ASP B 256 GLU B 259 1 O ILE B 258 N VAL A 108 SHEET 1 AA2 4 ASP A 156 GLU A 159 0 SHEET 2 AA2 4 ALA B 204 VAL B 210 1 O VAL B 208 N ILE A 158 SHEET 3 AA2 4 TYR B 216 HIS B 222 -1 O ARG B 217 N PHE B 209 SHEET 4 AA2 4 ILE B 227 ASP B 230 -1 O LEU B 228 N LEU B 220 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1