HEADER HYDROLASE 03-DEC-18 6Q35 TITLE CRYSTAL STRUCTURE OF GES-5 BETA-LACTAMASE IN COMPLEX WITH BORONIC TITLE 2 INHIBITOR CPD 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: UNOBSERVED RESIDUES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: BLAGES-5, PGES-GZ_027; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA-LACTAMASE; BACTERIAL RESISTANCE; ACYCLIC BORONIC INHIBITORS, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.MASO,A.QUOTADAMO,P.BELLIO,M.MONTANARI,A.VENTURELLI,G.CELENZA, AUTHOR 2 M.P.COSTI,D.TONDI,L.CENDRON REVDAT 3 24-JAN-24 6Q35 1 REMARK REVDAT 2 01-MAY-19 6Q35 1 JRNL REVDAT 1 24-APR-19 6Q35 0 JRNL AUTH L.CENDRON,A.QUOTADAMO,L.MASO,P.BELLIO,M.MONTANARI,G.CELENZA, JRNL AUTH 2 A.VENTURELLI,M.P.COSTI,D.TONDI JRNL TITL X-RAY CRYSTALLOGRAPHY DECIPHERS THE ACTIVITY OF JRNL TITL 2 BROAD-SPECTRUM BORONIC ACID BETA-LACTAMASE INHIBITORS. JRNL REF ACS MED.CHEM.LETT. V. 10 650 2019 JRNL REFN ISSN 1948-5875 JRNL PMID 30996812 JRNL DOI 10.1021/ACSMEDCHEMLETT.8B00607 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 99250 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 5051 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7258 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 367 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4080 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 100 REMARK 3 SOLVENT ATOMS : 281 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.12000 REMARK 3 B22 (A**2) : 0.19000 REMARK 3 B33 (A**2) : -0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.067 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.064 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.045 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.635 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4419 ; 0.016 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5989 ; 2.126 ; 1.668 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 581 ; 6.106 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 227 ;33.411 ;21.101 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 758 ;13.491 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;19.004 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 591 ; 0.136 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3344 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2198 ; 2.461 ; 1.731 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2761 ; 2.810 ; 2.600 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2221 ; 4.230 ; 2.116 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7216 ; 3.995 ;25.574 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4419 ; 5.527 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Q35 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1200013216. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 104301 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 58.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.02800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.33000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.880 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4GNU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NABR; 0.1 M BIS TRIS PROPANE PH REMARK 280 8.5; 20% W/V PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.83450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.76150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.72200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.76150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.83450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.72200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 18 REMARK 465 ASP A 286 REMARK 465 LYS A 287 REMARK 465 ALA B 18 REMARK 465 LYS B 287 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 64 B06 HD5 B 306 1.73 REMARK 500 OG SER B 64 B06 HD5 B 306 1.73 REMARK 500 NH1 ARG A 217 O1 EDO A 402 1.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 196 CB SER A 196 OG 0.079 REMARK 500 GLU B 98 CD GLU B 98 OE2 0.071 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 63 -140.45 44.56 REMARK 500 CYS A 63 -147.87 58.09 REMARK 500 TRP A 99 70.42 53.87 REMARK 500 THR A 215 -136.70 -108.91 REMARK 500 ALA A 259 75.18 -150.35 REMARK 500 CYS B 63 -143.32 53.51 REMARK 500 TRP B 99 75.38 57.48 REMARK 500 TRP B 99 75.38 60.91 REMARK 500 THR B 195 -160.58 -50.38 REMARK 500 THR B 215 -135.88 -104.13 REMARK 500 GLN B 247 -113.69 53.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HD5 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HD5 B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 307 DBREF 6Q35 A 18 287 UNP Q09HD0 Q09HD0_KLEPN 18 287 DBREF 6Q35 B 18 287 UNP Q09HD0 Q09HD0_KLEPN 18 287 SEQRES 1 A 270 ALA SER GLU LYS LEU THR PHE LYS THR ASP LEU GLU LYS SEQRES 2 A 270 LEU GLU ARG GLU LYS ALA ALA GLN ILE GLY VAL ALA ILE SEQRES 3 A 270 VAL ASP PRO GLN GLY GLU ILE VAL ALA GLY HIS ARG MET SEQRES 4 A 270 ALA GLN ARG PHE ALA MET CYS SER THR PHE LYS PHE PRO SEQRES 5 A 270 LEU ALA ALA LEU VAL PHE GLU ARG ILE ASP SER GLY THR SEQRES 6 A 270 GLU ARG GLY ASP ARG LYS LEU SER TYR GLY PRO ASP MET SEQRES 7 A 270 ILE VAL GLU TRP SER PRO ALA THR GLU ARG PHE LEU ALA SEQRES 8 A 270 SER GLY HIS MET THR VAL LEU GLU ALA ALA GLN ALA ALA SEQRES 9 A 270 VAL GLN LEU SER ASP ASN GLY ALA THR ASN LEU LEU LEU SEQRES 10 A 270 ARG GLU ILE GLY GLY PRO ALA ALA MET THR GLN TYR PHE SEQRES 11 A 270 ARG LYS ILE GLY ASP SER VAL SER ARG LEU ASP ARG LYS SEQRES 12 A 270 GLU PRO GLU MET SER ASP ASN THR PRO GLY ASP LEU ARG SEQRES 13 A 270 ASP THR THR THR PRO ILE ALA MET ALA ARG THR VAL ALA SEQRES 14 A 270 LYS VAL LEU TYR GLY GLY ALA LEU THR SER THR SER THR SEQRES 15 A 270 HIS THR ILE GLU ARG TRP LEU ILE GLY ASN GLN THR GLY SEQRES 16 A 270 ASP ALA THR LEU ARG ALA GLY PHE PRO LYS ASP TRP VAL SEQRES 17 A 270 VAL GLY GLU LYS THR GLY THR CYS ALA ASN GLY GLY ARG SEQRES 18 A 270 ASN ASP ILE GLY PHE PHE LYS ALA GLN GLU ARG ASP TYR SEQRES 19 A 270 ALA VAL ALA VAL TYR THR THR ALA PRO LYS LEU SER ALA SEQRES 20 A 270 VAL GLU ARG ASP GLU LEU VAL ALA SER VAL GLY GLN VAL SEQRES 21 A 270 ILE THR GLN LEU ILE LEU SER THR ASP LYS SEQRES 1 B 270 ALA SER GLU LYS LEU THR PHE LYS THR ASP LEU GLU LYS SEQRES 2 B 270 LEU GLU ARG GLU LYS ALA ALA GLN ILE GLY VAL ALA ILE SEQRES 3 B 270 VAL ASP PRO GLN GLY GLU ILE VAL ALA GLY HIS ARG MET SEQRES 4 B 270 ALA GLN ARG PHE ALA MET CYS SER THR PHE LYS PHE PRO SEQRES 5 B 270 LEU ALA ALA LEU VAL PHE GLU ARG ILE ASP SER GLY THR SEQRES 6 B 270 GLU ARG GLY ASP ARG LYS LEU SER TYR GLY PRO ASP MET SEQRES 7 B 270 ILE VAL GLU TRP SER PRO ALA THR GLU ARG PHE LEU ALA SEQRES 8 B 270 SER GLY HIS MET THR VAL LEU GLU ALA ALA GLN ALA ALA SEQRES 9 B 270 VAL GLN LEU SER ASP ASN GLY ALA THR ASN LEU LEU LEU SEQRES 10 B 270 ARG GLU ILE GLY GLY PRO ALA ALA MET THR GLN TYR PHE SEQRES 11 B 270 ARG LYS ILE GLY ASP SER VAL SER ARG LEU ASP ARG LYS SEQRES 12 B 270 GLU PRO GLU MET SER ASP ASN THR PRO GLY ASP LEU ARG SEQRES 13 B 270 ASP THR THR THR PRO ILE ALA MET ALA ARG THR VAL ALA SEQRES 14 B 270 LYS VAL LEU TYR GLY GLY ALA LEU THR SER THR SER THR SEQRES 15 B 270 HIS THR ILE GLU ARG TRP LEU ILE GLY ASN GLN THR GLY SEQRES 16 B 270 ASP ALA THR LEU ARG ALA GLY PHE PRO LYS ASP TRP VAL SEQRES 17 B 270 VAL GLY GLU LYS THR GLY THR CYS ALA ASN GLY GLY ARG SEQRES 18 B 270 ASN ASP ILE GLY PHE PHE LYS ALA GLN GLU ARG ASP TYR SEQRES 19 B 270 ALA VAL ALA VAL TYR THR THR ALA PRO LYS LEU SER ALA SEQRES 20 B 270 VAL GLU ARG ASP GLU LEU VAL ALA SER VAL GLY GLN VAL SEQRES 21 B 270 ILE THR GLN LEU ILE LEU SER THR ASP LYS HET EDO A 401 4 HET EDO A 402 4 HET EDO A 403 4 HET HD5 A 404 28 HET DMS A 405 4 HET EDO A 406 4 HET DMS A 407 4 HET DMS A 408 4 HET DMS A 409 4 HET DMS A 410 4 HET DMS A 411 4 HET DMS A 412 4 HET DMS A 413 4 HET EDO B 301 4 HET DMS B 302 4 HET EDO B 303 8 HET EDO B 304 4 HET EDO B 305 4 HET HD5 B 306 28 HET EDO B 307 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM HD5 [5-(AMINOMETHYL)-1-BENZOTHIOPHEN-2-YL]BORONIC ACID HETNAM DMS DIMETHYL SULFOXIDE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 9(C2 H6 O2) FORMUL 6 HD5 2(C9 H10 B N O2 S) FORMUL 7 DMS 9(C2 H6 O S) FORMUL 23 HOH *281(H2 O) HELIX 1 AA1 SER A 19 ALA A 36 1 18 HELIX 2 AA2 CYS A 63 THR A 65 5 3 HELIX 3 AA3 PHE A 66 SER A 80 1 15 HELIX 4 AA4 GLY A 92 ILE A 96 5 5 HELIX 5 AA5 SER A 100 LEU A 107 1 8 HELIX 6 AA6 VAL A 114 SER A 125 1 12 HELIX 7 AA7 ASP A 126 GLY A 138 1 13 HELIX 8 AA8 GLY A 139 ILE A 150 1 12 HELIX 9 AA9 PRO A 162 ASP A 166 5 5 HELIX 10 AB1 THR A 177 GLY A 191 1 15 HELIX 11 AB2 THR A 195 GLY A 208 1 14 HELIX 12 AB3 THR A 215 PHE A 220 5 6 HELIX 13 AB4 SER A 263 THR A 285 1 23 HELIX 14 AB5 GLU B 20 ALA B 36 1 17 HELIX 15 AB6 CYS B 63 THR B 65 5 3 HELIX 16 AB7 PHE B 66 SER B 80 1 15 HELIX 17 AB8 GLY B 92 ILE B 96 5 5 HELIX 18 AB9 SER B 100 LEU B 107 1 8 HELIX 19 AC1 VAL B 114 SER B 125 1 12 HELIX 20 AC2 ASP B 126 GLY B 138 1 13 HELIX 21 AC3 GLY B 138 ILE B 150 1 13 HELIX 22 AC4 PRO B 162 ASP B 166 5 5 HELIX 23 AC5 THR B 177 GLY B 191 1 15 HELIX 24 AC6 THR B 197 GLY B 208 1 12 HELIX 25 AC7 THR B 215 PHE B 220 5 6 HELIX 26 AC8 SER B 263 SER B 284 1 22 SHEET 1 AA1 5 ILE A 50 HIS A 54 0 SHEET 2 AA1 5 GLN A 38 VAL A 44 -1 N ILE A 43 O VAL A 51 SHEET 3 AA1 5 ARG A 249 THR A 258 -1 O TYR A 256 N GLY A 40 SHEET 4 AA1 5 GLY A 237 ALA A 246 -1 N ASP A 240 O VAL A 255 SHEET 5 AA1 5 VAL A 225 CYS A 233 -1 N LYS A 229 O ILE A 241 SHEET 1 AA2 2 PHE A 60 ALA A 61 0 SHEET 2 AA2 2 THR A 175 THR A 176 -1 O THR A 176 N PHE A 60 SHEET 1 AA3 2 LYS A 88 SER A 90 0 SHEET 2 AA3 2 HIS A 111 THR A 113 -1 O MET A 112 N LEU A 89 SHEET 1 AA4 5 ILE B 50 HIS B 54 0 SHEET 2 AA4 5 GLN B 38 VAL B 44 -1 N ILE B 43 O VAL B 51 SHEET 3 AA4 5 ARG B 249 THR B 258 -1 O TYR B 256 N GLY B 40 SHEET 4 AA4 5 GLY B 237 ALA B 246 -1 N ASP B 240 O VAL B 255 SHEET 5 AA4 5 VAL B 225 CYS B 233 -1 N LYS B 229 O ILE B 241 SHEET 1 AA5 2 PHE B 60 ALA B 61 0 SHEET 2 AA5 2 THR B 175 THR B 176 -1 O THR B 176 N PHE B 60 SHEET 1 AA6 2 LYS B 88 SER B 90 0 SHEET 2 AA6 2 HIS B 111 THR B 113 -1 O MET B 112 N LEU B 89 SSBOND 1 CYS A 63 CYS A 233 1555 1555 2.12 SSBOND 2 CYS B 63 CYS B 233 1555 1555 1.92 LINK OG SER A 64 B06AHD5 A 404 1555 1555 1.63 LINK OG SER A 64 B06BHD5 A 404 1555 1555 1.60 CISPEP 1 GLU A 161 PRO A 162 0 3.80 CISPEP 2 GLU B 161 PRO B 162 0 -1.40 SITE 1 AC1 7 ARG A 217 PHE A 220 PRO A 221 LYS A 222 SITE 2 AC1 7 TRP A 224 VAL A 226 ALA B 108 SITE 1 AC2 3 ASP A 213 ARG A 217 ARG B 105 SITE 1 AC3 4 THR A 232 CYS A 233 ALA A 234 HD5 A 404 SITE 1 AC4 13 CYS A 63 SER A 64 LYS A 67 GLU A 98 SITE 2 AC4 13 TRP A 99 ASN A 127 GLU A 161 PRO A 162 SITE 3 AC4 13 SER A 165 GLY A 231 THR A 232 EDO A 403 SITE 4 AC4 13 DMS A 405 SITE 1 AC5 9 SER A 64 SER A 125 THR A 211 LYS A 229 SITE 2 AC5 9 THR A 230 GLY A 231 THR A 232 ARG A 238 SITE 3 AC5 9 HD5 A 404 SITE 1 AC6 4 THR A 113 GLU A 116 HOH A 606 ARG B 204 SITE 1 AC7 5 ALA A 36 GLN A 38 ARG A 135 GLU A 136 SITE 2 AC7 5 HOH A 509 SITE 1 AC8 7 ARG A 59 ASN A 167 THR A 168 PRO A 169 SITE 2 AC8 7 GLY A 170 ASP A 171 HOH A 519 SITE 1 AC9 4 GLN A 145 LYS A 149 GLY B 81 GLU B 83 SITE 1 AD1 4 GLY A 81 GLU A 83 ARG A 84 LEU B 22 SITE 1 AD2 6 ALA A 141 THR A 144 LEU A 157 ASP A 158 SITE 2 AD2 6 HOH A 575 GLU B 248 SITE 1 AD3 3 PHE A 75 ILE A 78 LEU A 115 SITE 1 AD4 3 LYS A 222 PRO B 93 HOH B 496 SITE 1 AD5 7 ALA A 102 PHE A 106 LEU A 124 GLN B 123 SITE 2 AD5 7 GLN B 210 HOH B 448 HOH B 489 SITE 1 AD6 9 SER B 64 SER B 125 THR B 211 LYS B 229 SITE 2 AD6 9 THR B 230 GLY B 231 THR B 232 ARG B 238 SITE 3 AD6 9 HD5 B 306 SITE 1 AD7 12 GLN A 123 GLY A 208 GLN A 210 HOH A 560 SITE 2 AD7 12 ALA B 102 PHE B 106 GLU B 116 GLN B 119 SITE 3 AD7 12 ALA B 120 LEU B 124 EDO B 307 HOH B 401 SITE 1 AD8 3 ARG B 59 GLY B 170 ASP B 171 SITE 1 AD9 4 THR B 232 CYS B 233 ALA B 234 HD5 B 306 SITE 1 AE1 11 CYS B 63 SER B 64 GLU B 98 TRP B 99 SITE 2 AE1 11 ASN B 127 GLU B 161 SER B 165 GLY B 231 SITE 3 AE1 11 THR B 232 DMS B 302 EDO B 305 SITE 1 AE2 6 GLN A 123 ARG A 204 TRP A 205 PHE B 106 SITE 2 AE2 6 GLU B 116 EDO B 303 CRYST1 75.669 79.444 87.523 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013215 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012587 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011426 0.00000