HEADER HYDROLASE 06-DEC-18 6Q4L OBSLTE 08-MAR-23 6Q4L 6Z28 TITLE CARBOXYPEPTIDASE T MUTANT L254N WITH WITH N-SULFAMOYL-L-GLUTAMIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBOXYPEPTIDASE T; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.17.18; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOACTINOMYCES VULGARIS; SOURCE 3 ORGANISM_TAXID: 2026; SOURCE 4 GENE: CPT; SOURCE 5 EXPRESSION_SYSTEM: THERMOACTINOMYCES VULGARIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 2026 KEYWDS PEPTIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR V.I.TIMOFEEV,V.K.AKPAROV,I.P.KURANOVA REVDAT 2 08-MAR-23 6Q4L 1 OBSLTE LINK REVDAT 1 12-DEC-18 6Q4L 0 JRNL AUTH V.I.TIMOFEEV,V.K.AKPAROV,I.P.KURANOVA JRNL TITL CARBOXYPEPTIDASE T MUTANT L254N WITH WITH JRNL TITL 2 N-SULFAMOYL-L-GLUTAMIC ACID JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 32923 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1742 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2191 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 125 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2581 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 255 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : -0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.136 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.131 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.088 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.653 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2712 ; 0.020 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2278 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3698 ; 1.993 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5319 ; 1.129 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 332 ; 7.180 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 138 ;31.342 ;24.420 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 417 ;13.566 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;19.371 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 384 ; 0.202 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3096 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 581 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1319 ; 1.613 ; 1.762 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1318 ; 1.608 ; 1.762 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1654 ; 2.532 ; 2.628 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1655 ; 2.537 ; 2.629 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1391 ; 2.683 ; 1.939 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1381 ; 2.599 ; 1.919 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2032 ; 4.046 ; 2.793 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3241 ; 5.705 ;21.085 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3206 ; 5.614 ;20.885 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6Q4L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1200013293. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34712 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 10.61 REMARK 200 R MERGE (I) : 0.22800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 2.4107 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.49 REMARK 200 R MERGE FOR SHELL (I) : 0.33000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5MYH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4 SA, COUNTER-DIFFUSION, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.43550 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 52.43550 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.43550 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 52.43550 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 52.43550 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 52.43550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 607 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 640 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 721 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 735 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 633 O HOH A 633 10554 1.96 REMARK 500 OE1 GLN A 242 OD1 ASN A 284 11654 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 200 CA - CB - CG ANGL. DEV. = 19.0 DEGREES REMARK 500 ASP A 253 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 253 CB - CG - OD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 72 56.53 -90.65 REMARK 500 ASN A 91 9.45 57.83 REMARK 500 ASN A 110 98.95 -162.88 REMARK 500 ASN A 131 -169.50 -77.82 REMARK 500 SER A 207 -19.04 156.55 REMARK 500 ASN A 254 -76.15 -37.26 REMARK 500 CYS A 314 74.50 50.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 CYS A 155 CYS A 156 -148.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 408 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 5 O REMARK 620 2 ASP A 291 OD1 85.6 REMARK 620 3 GLU A 292 OE1 131.1 72.3 REMARK 620 4 GLU A 292 OE2 171.7 86.1 45.9 REMARK 620 5 HOH A 599 O 69.7 88.9 66.9 110.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 7 O REMARK 620 2 TYR A 9 O 80.7 REMARK 620 3 GLU A 14 OE1 165.0 84.4 REMARK 620 4 GLU A 14 OE2 147.0 131.7 47.6 REMARK 620 5 HOH A 602 O 100.4 96.8 82.7 83.6 REMARK 620 6 HOH A 726 O 91.4 83.7 85.6 87.2 168.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 404 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 50 OG REMARK 620 2 ASP A 51 O 88.5 REMARK 620 3 ASP A 51 OD1 106.2 72.3 REMARK 620 4 GLU A 57 OE1 174.5 94.3 79.1 REMARK 620 5 GLU A 59 OE1 88.4 172.1 115.5 88.2 REMARK 620 6 HOH A 501 O 69.0 109.7 54.6 114.3 75.8 REMARK 620 7 HOH A 598 O 84.7 80.0 149.7 91.1 92.5 151.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 405 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 56 OD1 REMARK 620 2 GLU A 57 O 90.9 REMARK 620 3 GLU A 61 OE2 95.1 171.3 REMARK 620 4 GLU A 104 OE1 95.9 87.0 86.1 REMARK 620 5 HOH A 527 O 148.3 86.7 91.3 115.6 REMARK 620 6 HOH A 679 O 74.3 89.8 97.8 169.7 74.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 69 ND1 REMARK 620 2 GLU A 72 OE1 116.1 REMARK 620 3 GLU A 72 OE2 92.9 58.8 REMARK 620 4 HIS A 204 ND1 98.3 92.1 150.7 REMARK 620 5 3K0 A 402 NAA 121.0 115.1 89.5 107.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3K0 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 408 DBREF 6Q4L A 1 323 UNP P29068 CBPT_THEVU 99 421 SEQADV 6Q4L ASN A 254 UNP P29068 LEU 352 ENGINEERED MUTATION SEQRES 1 A 323 ASP PHE PRO SER TYR ASP SER GLY TYR HIS ASN TYR ASN SEQRES 2 A 323 GLU MET VAL ASN LYS ILE ASN THR VAL ALA SER ASN TYR SEQRES 3 A 323 PRO ASN ILE VAL LYS LYS PHE SER ILE GLY LYS SER TYR SEQRES 4 A 323 GLU GLY ARG GLU LEU TRP ALA VAL LYS ILE SER ASP ASN SEQRES 5 A 323 VAL GLY THR ASP GLU ASN GLU PRO GLU VAL LEU TYR THR SEQRES 6 A 323 ALA LEU HIS HIS ALA ARG GLU HIS LEU THR VAL GLU MET SEQRES 7 A 323 ALA LEU TYR THR LEU ASP LEU PHE THR GLN ASN TYR ASN SEQRES 8 A 323 LEU ASP SER ARG ILE THR ASN LEU VAL ASN ASN ARG GLU SEQRES 9 A 323 ILE TYR ILE VAL PHE ASN ILE ASN PRO ASP GLY GLY GLU SEQRES 10 A 323 TYR ASP ILE SER SER GLY SER TYR LYS SER TRP ARG LYS SEQRES 11 A 323 ASN ARG GLN PRO ASN SER GLY SER SER TYR VAL GLY THR SEQRES 12 A 323 ASP LEU ASN ARG ASN TYR GLY TYR LYS TRP GLY CYS CYS SEQRES 13 A 323 GLY GLY SER SER GLY SER PRO SER SER GLU THR TYR ARG SEQRES 14 A 323 GLY ARG SER ALA PHE SER ALA PRO GLU THR ALA ALA MET SEQRES 15 A 323 ARG ASP PHE ILE ASN SER ARG VAL VAL GLY GLY LYS GLN SEQRES 16 A 323 GLN ILE LYS THR LEU ILE THR PHE HIS THR TYR SER GLU SEQRES 17 A 323 LEU ILE LEU TYR PRO TYR GLY TYR THR TYR THR ASP VAL SEQRES 18 A 323 PRO SER ASP MET THR GLN ASP ASP PHE ASN VAL PHE LYS SEQRES 19 A 323 THR MET ALA ASN THR MET ALA GLN THR ASN GLY TYR THR SEQRES 20 A 323 PRO GLN GLN ALA SER ASP ASN TYR ILE THR ASP GLY ASP SEQRES 21 A 323 MET THR ASP TRP ALA TYR GLY GLN HIS LYS ILE PHE ALA SEQRES 22 A 323 PHE THR PHE GLU MET TYR PRO THR SER TYR ASN PRO GLY SEQRES 23 A 323 PHE TYR PRO PRO ASP GLU VAL ILE GLY ARG GLU THR SER SEQRES 24 A 323 ARG ASN LYS GLU ALA VAL LEU TYR VAL ALA GLU LYS ALA SEQRES 25 A 323 ASP CYS PRO TYR SER VAL ILE GLY LYS SER CYS HET ZN A 401 1 HET 3K0 A 402 14 HET CA A 403 1 HET CA A 404 1 HET CA A 405 1 HET SO4 A 406 5 HET SO4 A 407 5 HET CA A 408 1 HETNAM ZN ZINC ION HETNAM 3K0 N-SULFAMOYL-L-GLUTAMIC ACID HETNAM CA CALCIUM ION HETNAM SO4 SULFATE ION FORMUL 2 ZN ZN 2+ FORMUL 3 3K0 C5 H10 N2 O6 S FORMUL 4 CA 4(CA 2+) FORMUL 7 SO4 2(O4 S 2-) FORMUL 10 HOH *255(H2 O) HELIX 1 AA1 PRO A 3 SER A 7 5 5 HELIX 2 AA2 ASN A 11 TYR A 26 1 16 HELIX 3 AA3 HIS A 73 ASN A 89 1 17 HELIX 4 AA4 ASP A 93 ARG A 103 1 11 HELIX 5 AA5 ASN A 112 ILE A 120 1 9 HELIX 6 AA6 ASP A 144 ASN A 148 5 5 HELIX 7 AA7 ALA A 176 SER A 188 1 13 HELIX 8 AA8 THR A 226 GLY A 245 1 20 HELIX 9 AA9 ASP A 260 LYS A 270 1 11 HELIX 10 AB1 PRO A 290 GLU A 292 5 3 HELIX 11 AB2 VAL A 293 ARG A 300 1 8 HELIX 12 AB3 ASN A 301 ALA A 312 1 12 HELIX 13 AB4 ASP A 313 GLY A 320 5 8 SHEET 1 AA1 8 VAL A 30 LYS A 37 0 SHEET 2 AA1 8 GLU A 43 ILE A 49 -1 O LEU A 44 N ILE A 35 SHEET 3 AA1 8 GLU A 104 VAL A 108 -1 O ILE A 105 N ILE A 49 SHEET 4 AA1 8 GLU A 61 ALA A 66 1 N TYR A 64 O VAL A 108 SHEET 5 AA1 8 ILE A 197 HIS A 204 1 O PHE A 203 N THR A 65 SHEET 6 AA1 8 PHE A 272 GLU A 277 1 O PHE A 276 N HIS A 204 SHEET 7 AA1 8 LEU A 209 TYR A 212 -1 N LEU A 209 O GLU A 277 SHEET 8 AA1 8 THR A 247 GLN A 250 1 O GLN A 249 N ILE A 210 SHEET 1 AA2 2 VAL A 190 VAL A 191 0 SHEET 2 AA2 2 LYS A 194 GLN A 195 -1 O LYS A 194 N VAL A 191 SSBOND 1 CYS A 155 CYS A 156 1555 1555 2.10 SSBOND 2 CYS A 314 CYS A 323 1555 1555 2.10 LINK O TYR A 5 CA CA A 408 1555 1555 2.36 LINK O SER A 7 CA CA A 403 1555 1555 2.28 LINK O TYR A 9 CA CA A 403 1555 1555 2.44 LINK OE1 GLU A 14 CA CA A 403 1555 1555 2.57 LINK OE2 GLU A 14 CA CA A 403 1555 1555 2.85 LINK OG SER A 50 CA CA A 404 1555 1555 2.52 LINK O ASP A 51 CA CA A 404 1555 1555 2.40 LINK OD1 ASP A 51 CA CA A 404 1555 1555 2.46 LINK OD1 ASP A 56 CA CA A 405 1555 1555 2.42 LINK OE1 GLU A 57 CA CA A 404 1555 1555 2.47 LINK O GLU A 57 CA CA A 405 1555 1555 2.53 LINK OE1 GLU A 59 CA CA A 404 1555 1555 2.64 LINK OE2 GLU A 61 CA CA A 405 1555 1555 2.45 LINK ND1 HIS A 69 ZN ZN A 401 1555 1555 2.03 LINK OE1 GLU A 72 ZN ZN A 401 1555 1555 2.17 LINK OE2 GLU A 72 ZN ZN A 401 1555 1555 2.38 LINK OE1 GLU A 104 CA CA A 405 1555 1555 2.32 LINK ND1 HIS A 204 ZN ZN A 401 1555 1555 2.09 LINK OD1 ASP A 291 CA CA A 408 1555 1555 2.57 LINK OE1 GLU A 292 CA CA A 408 1555 1555 3.00 LINK OE2 GLU A 292 CA CA A 408 1555 1555 2.61 LINK ZN ZN A 401 NAA 3K0 A 402 1555 1555 2.04 LINK CA CA A 403 O HOH A 602 1555 1555 2.39 LINK CA CA A 403 O HOH A 726 1555 1555 2.64 LINK CA CA A 404 O HOH A 501 1555 1555 2.38 LINK CA CA A 404 O HOH A 598 1555 1555 2.36 LINK CA CA A 405 O HOH A 527 1555 1555 2.31 LINK CA CA A 405 O HOH A 679 1555 1555 2.55 LINK CA CA A 408 O HOH A 599 1555 1555 2.68 CISPEP 1 THR A 205 TYR A 206 0 -0.82 CISPEP 2 PRO A 213 TYR A 214 0 1.53 CISPEP 3 TYR A 279 PRO A 280 0 -1.03 CISPEP 4 ASN A 284 PRO A 285 0 6.57 CISPEP 5 ASN A 284 PRO A 285 0 12.88 SITE 1 AC1 4 HIS A 69 GLU A 72 HIS A 204 3K0 A 402 SITE 1 AC2 15 HIS A 69 GLU A 72 ARG A 129 ASN A 146 SITE 2 AC2 15 ARG A 147 HIS A 204 THR A 205 LEU A 211 SITE 3 AC2 15 ALA A 251 TYR A 255 ASP A 260 GLU A 277 SITE 4 AC2 15 ZN A 401 HOH A 594 HOH A 629 SITE 1 AC3 5 SER A 7 TYR A 9 GLU A 14 HOH A 602 SITE 2 AC3 5 HOH A 726 SITE 1 AC4 6 SER A 50 ASP A 51 GLU A 57 GLU A 59 SITE 2 AC4 6 HOH A 501 HOH A 598 SITE 1 AC5 6 ASP A 56 GLU A 57 GLU A 61 GLU A 104 SITE 2 AC5 6 HOH A 527 HOH A 679 SITE 1 AC6 8 SER A 138 SER A 139 TYR A 140 ARG A 171 SITE 2 AC6 8 SER A 172 HOH A 525 HOH A 583 HOH A 605 SITE 1 AC7 8 PHE A 174 ARG A 183 ASN A 187 TRP A 264 SITE 2 AC7 8 GLN A 268 HOH A 507 HOH A 508 HOH A 606 SITE 1 AC8 4 TYR A 5 ASP A 291 GLU A 292 HOH A 599 CRYST1 158.520 158.520 104.871 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006308 0.003642 0.000000 0.00000 SCALE2 0.000000 0.007284 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009536 0.00000