HEADER TRANSFERASE 06-DEC-18 6Q4W TITLE STRUCTURE OF MPT-1, A GDP-MAN-DEPENDENT MANNOSYLTRANSFERASE FROM TITLE 2 LEISHMANIA MEXICANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: LMXM MPT-1; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MEXICANA (STRAIN SOURCE 3 MHOM/GT/2001/U1103); SOURCE 4 ORGANISM_TAXID: 929439; SOURCE 5 STRAIN: MHOM/GT/2001/U1103; SOURCE 6 GENE: LMXM_10_1230; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A(+) KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.F.SOBALA,A.MALES,L.M.BASTIDAS,T.WARD,M.F.SERNEE,J.E.RALTON, AUTHOR 2 T.L.NERO,S.COBBOLD,J.KLOEHN,M.VIERA-LARA,L.STANTON,E.HANSSEN, AUTHOR 3 M.W.PARKER,S.J.WILLIAMS,M.J.MCCONVILLE,G.J.DAVIES REVDAT 4 24-JAN-24 6Q4W 1 REMARK REVDAT 3 17-FEB-21 6Q4W 1 REMARK REVDAT 2 25-SEP-19 6Q4W 1 JRNL REVDAT 1 18-SEP-19 6Q4W 0 JRNL AUTH M.F.SERNEE,J.E.RALTON,T.L.NERO,L.F.SOBALA,J.KLOEHN, JRNL AUTH 2 M.A.VIEIRA-LARA,S.A.COBBOLD,L.STANTON,D.E.V.PIRES,E.HANSSEN, JRNL AUTH 3 A.MALES,T.WARD,L.M.BASTIDAS,P.L.VAN DER PEET,M.W.PARKER, JRNL AUTH 4 D.B.ASCHER,S.J.WILLIAMS,G.J.DAVIES,M.J.MCCONVILLE JRNL TITL A FAMILY OF DUAL-ACTIVITY GLYCOSYLTRANSFERASE-PHOSPHORYLASES JRNL TITL 2 MEDIATES MANNOGEN TURNOVER AND VIRULENCE IN LEISHMANIA JRNL TITL 3 PARASITES. JRNL REF CELL HOST MICROBE V. 26 385 2019 JRNL REFN ESSN 1934-6069 JRNL PMID 31513773 JRNL DOI 10.1016/J.CHOM.2019.08.009 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 76774 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3977 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5463 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.1820 REMARK 3 BIN FREE R VALUE SET COUNT : 345 REMARK 3 BIN FREE R VALUE : 0.2350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4852 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 606 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.86000 REMARK 3 B22 (A**2) : 0.57000 REMARK 3 B33 (A**2) : 0.12000 REMARK 3 B12 (A**2) : -0.60000 REMARK 3 B13 (A**2) : -1.59000 REMARK 3 B23 (A**2) : -1.73000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.108 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.092 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.079 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.994 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5039 ; 0.014 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4536 ; 0.003 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6844 ; 1.767 ; 1.640 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10537 ; 1.475 ; 1.579 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 640 ; 7.294 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 256 ;30.985 ;22.734 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 827 ;13.148 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;12.511 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 656 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5717 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1101 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2494 ; 3.246 ; 1.722 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2493 ; 3.243 ; 1.722 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3117 ; 3.771 ; 2.600 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3118 ; 3.771 ; 2.600 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2545 ; 4.291 ; 2.139 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2545 ; 4.291 ; 2.138 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3714 ; 5.036 ; 3.067 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5637 ; 5.818 ;22.437 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5483 ; 5.461 ;21.761 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 9575 ; 6.002 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 16 327 B 16 327 9688 0.09 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6Q4W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1200013297. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS 1.8.6-GC63D8697-RELEASE REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.1 : 27/03/18 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80753 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 72.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.8 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.35700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6Q4Y REMARK 200 REMARK 200 REMARK: NEEDLES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% W/V PEG 20K, 100 MM MES PH 6.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 ASN A 4 REMARK 465 GLY A 5 REMARK 465 SER A 6 REMARK 465 HIS A 7 REMARK 465 THR A 8 REMARK 465 GLU A 9 REMARK 465 PRO A 10 REMARK 465 GLN A 11 REMARK 465 VAL A 12 REMARK 465 LYS A 170 REMARK 465 THR A 171 REMARK 465 SER A 172 REMARK 465 ASN A 173 REMARK 465 THR A 174 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 SER B 3 REMARK 465 ASN B 4 REMARK 465 GLY B 5 REMARK 465 SER B 6 REMARK 465 HIS B 7 REMARK 465 THR B 8 REMARK 465 GLU B 9 REMARK 465 PRO B 10 REMARK 465 GLN B 11 REMARK 465 VAL B 12 REMARK 465 ARG B 13 REMARK 465 GLU B 14 REMARK 465 GLU B 15 REMARK 465 LYS B 170 REMARK 465 THR B 171 REMARK 465 SER B 172 REMARK 465 ASN B 173 REMARK 465 THR B 174 REMARK 465 CYS B 175 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 13 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 23 CD CE NZ REMARK 470 LYS A 136 CD CE NZ REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 GLN A 191 CG CD OE1 NE2 REMARK 470 LYS A 251 CE NZ REMARK 470 THR A 254 CG2 REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 LYS B 136 CD CE NZ REMARK 470 ASP B 138 CG OD1 OD2 REMARK 470 GLU B 292 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 404 O HOH A 427 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 78 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 42 53.58 -152.87 REMARK 500 ASN A 74 54.93 -143.86 REMARK 500 GLN B 32 -162.47 -127.38 REMARK 500 LEU B 42 57.24 -147.37 REMARK 500 ASN B 74 53.97 -144.38 REMARK 500 ASP B 139 69.28 -155.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 294 LYS A 295 -149.46 REMARK 500 REMARK 500 REMARK: NULL DBREF 6Q4W A 1 328 UNP E9AND7 E9AND7_LEIMU 1 328 DBREF 6Q4W B 1 328 UNP E9AND7 E9AND7_LEIMU 1 328 SEQADV 6Q4W MET A -19 UNP E9AND7 INITIATING METHIONINE SEQADV 6Q4W GLY A -18 UNP E9AND7 EXPRESSION TAG SEQADV 6Q4W SER A -17 UNP E9AND7 EXPRESSION TAG SEQADV 6Q4W SER A -16 UNP E9AND7 EXPRESSION TAG SEQADV 6Q4W HIS A -15 UNP E9AND7 EXPRESSION TAG SEQADV 6Q4W HIS A -14 UNP E9AND7 EXPRESSION TAG SEQADV 6Q4W HIS A -13 UNP E9AND7 EXPRESSION TAG SEQADV 6Q4W HIS A -12 UNP E9AND7 EXPRESSION TAG SEQADV 6Q4W HIS A -11 UNP E9AND7 EXPRESSION TAG SEQADV 6Q4W HIS A -10 UNP E9AND7 EXPRESSION TAG SEQADV 6Q4W SER A -9 UNP E9AND7 EXPRESSION TAG SEQADV 6Q4W SER A -8 UNP E9AND7 EXPRESSION TAG SEQADV 6Q4W GLY A -7 UNP E9AND7 EXPRESSION TAG SEQADV 6Q4W LEU A -6 UNP E9AND7 EXPRESSION TAG SEQADV 6Q4W VAL A -5 UNP E9AND7 EXPRESSION TAG SEQADV 6Q4W PRO A -4 UNP E9AND7 EXPRESSION TAG SEQADV 6Q4W ARG A -3 UNP E9AND7 EXPRESSION TAG SEQADV 6Q4W GLY A -2 UNP E9AND7 EXPRESSION TAG SEQADV 6Q4W SER A -1 UNP E9AND7 EXPRESSION TAG SEQADV 6Q4W HIS A 0 UNP E9AND7 EXPRESSION TAG SEQADV 6Q4W MET B -19 UNP E9AND7 INITIATING METHIONINE SEQADV 6Q4W GLY B -18 UNP E9AND7 EXPRESSION TAG SEQADV 6Q4W SER B -17 UNP E9AND7 EXPRESSION TAG SEQADV 6Q4W SER B -16 UNP E9AND7 EXPRESSION TAG SEQADV 6Q4W HIS B -15 UNP E9AND7 EXPRESSION TAG SEQADV 6Q4W HIS B -14 UNP E9AND7 EXPRESSION TAG SEQADV 6Q4W HIS B -13 UNP E9AND7 EXPRESSION TAG SEQADV 6Q4W HIS B -12 UNP E9AND7 EXPRESSION TAG SEQADV 6Q4W HIS B -11 UNP E9AND7 EXPRESSION TAG SEQADV 6Q4W HIS B -10 UNP E9AND7 EXPRESSION TAG SEQADV 6Q4W SER B -9 UNP E9AND7 EXPRESSION TAG SEQADV 6Q4W SER B -8 UNP E9AND7 EXPRESSION TAG SEQADV 6Q4W GLY B -7 UNP E9AND7 EXPRESSION TAG SEQADV 6Q4W LEU B -6 UNP E9AND7 EXPRESSION TAG SEQADV 6Q4W VAL B -5 UNP E9AND7 EXPRESSION TAG SEQADV 6Q4W PRO B -4 UNP E9AND7 EXPRESSION TAG SEQADV 6Q4W ARG B -3 UNP E9AND7 EXPRESSION TAG SEQADV 6Q4W GLY B -2 UNP E9AND7 EXPRESSION TAG SEQADV 6Q4W SER B -1 UNP E9AND7 EXPRESSION TAG SEQADV 6Q4W HIS B 0 UNP E9AND7 EXPRESSION TAG SEQRES 1 A 348 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 348 LEU VAL PRO ARG GLY SER HIS MET GLY SER ASN GLY SER SEQRES 3 A 348 HIS THR GLU PRO GLN VAL ARG GLU GLU CYS THR MET VAL SEQRES 4 A 348 ALA LYS ARG LYS GLU PHE GLU ARG THR LYS VAL ILE GLN SEQRES 5 A 348 GLU ALA VAL PHE LEU THR PHE LYS GLY LEU ASP THR HIS SEQRES 6 A 348 ASP VAL TYR ASN CYS CYS VAL PRO PHE THR ILE ASN GLY SEQRES 7 A 348 THR TYR HIS ILE PHE GLY ARG VAL GLU ARG ARG SER GLU SEQRES 8 A 348 TRP VAL ASN SER HIS VAL ARG LEU PHE CYS LYS THR GLY SEQRES 9 A 348 HIS ASP GLU TYR THR LEU VAL GLU HIS ALA MET GLN TYR SEQRES 10 A 348 GLN LEU GLU ASP PRO PHE LEU VAL LYS ILE ASN GLY GLU SEQRES 11 A 348 ALA LEU PHE GLY GLY VAL ARG VAL THR LYS ASP HIS GLY SEQRES 12 A 348 LYS VAL SER GLY TYR VAL CYS ASP PHE TYR ARG GLY LYS SEQRES 13 A 348 ILE ASP ASP LEU HIS TYR PHE THR SER GLY PRO LYS ASN SEQRES 14 A 348 MET LYS ASP ILE ARG LEU ILE GLY LEU ALA ASP GLY LYS SEQRES 15 A 348 ILE GLY VAL PHE SER HIS HIS LYS THR SER ASN THR CYS SEQRES 16 A 348 VAL THR GLY PHE ILE ILE ILE ASP SER LEU ASP ASP LEU SEQRES 17 A 348 CYS SER GLN VAL ILE ASP SER ALA LYS PRO ILE ASP HIS SEQRES 18 A 348 THR LEU PHE GLY ASP ALA TRP GLY GLY VAL ASN GLN PRO SEQRES 19 A 348 TYR LEU LEU SER THR GLY LYS ILE GLY CYS ILE SER HIS SEQRES 20 A 348 HIS GLY TYR LEU ASP THR ASP ALA ASN GLY GLU VAL ILE SEQRES 21 A 348 ASN VAL TYR CYS ILE THR SER PHE VAL TYR LYS PRO SER SEQRES 22 A 348 THR ASN THR CYS TYR ASP TYR LYS ILE LEU GLY THR LYS SEQRES 23 A 348 ASN CYS PHE PRO GLU TYR PRO ALA LYS ALA PRO LYS LEU SEQRES 24 A 348 ILE ASP CYS VAL PHE VAL SER GLY ILE VAL MET ARG GLU SEQRES 25 A 348 ASP GLY LYS CYS ASP LEU TYR SER GLY VAL GLY ASP THR SEQRES 26 A 348 GLN GLU GLY ARG MET MET ILE ASN TYR PRO PHE GLU GLY SEQRES 27 A 348 HIS GLY THR ILE VAL ASP ASN VAL ASN PHE SEQRES 1 B 348 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 348 LEU VAL PRO ARG GLY SER HIS MET GLY SER ASN GLY SER SEQRES 3 B 348 HIS THR GLU PRO GLN VAL ARG GLU GLU CYS THR MET VAL SEQRES 4 B 348 ALA LYS ARG LYS GLU PHE GLU ARG THR LYS VAL ILE GLN SEQRES 5 B 348 GLU ALA VAL PHE LEU THR PHE LYS GLY LEU ASP THR HIS SEQRES 6 B 348 ASP VAL TYR ASN CYS CYS VAL PRO PHE THR ILE ASN GLY SEQRES 7 B 348 THR TYR HIS ILE PHE GLY ARG VAL GLU ARG ARG SER GLU SEQRES 8 B 348 TRP VAL ASN SER HIS VAL ARG LEU PHE CYS LYS THR GLY SEQRES 9 B 348 HIS ASP GLU TYR THR LEU VAL GLU HIS ALA MET GLN TYR SEQRES 10 B 348 GLN LEU GLU ASP PRO PHE LEU VAL LYS ILE ASN GLY GLU SEQRES 11 B 348 ALA LEU PHE GLY GLY VAL ARG VAL THR LYS ASP HIS GLY SEQRES 12 B 348 LYS VAL SER GLY TYR VAL CYS ASP PHE TYR ARG GLY LYS SEQRES 13 B 348 ILE ASP ASP LEU HIS TYR PHE THR SER GLY PRO LYS ASN SEQRES 14 B 348 MET LYS ASP ILE ARG LEU ILE GLY LEU ALA ASP GLY LYS SEQRES 15 B 348 ILE GLY VAL PHE SER HIS HIS LYS THR SER ASN THR CYS SEQRES 16 B 348 VAL THR GLY PHE ILE ILE ILE ASP SER LEU ASP ASP LEU SEQRES 17 B 348 CYS SER GLN VAL ILE ASP SER ALA LYS PRO ILE ASP HIS SEQRES 18 B 348 THR LEU PHE GLY ASP ALA TRP GLY GLY VAL ASN GLN PRO SEQRES 19 B 348 TYR LEU LEU SER THR GLY LYS ILE GLY CYS ILE SER HIS SEQRES 20 B 348 HIS GLY TYR LEU ASP THR ASP ALA ASN GLY GLU VAL ILE SEQRES 21 B 348 ASN VAL TYR CYS ILE THR SER PHE VAL TYR LYS PRO SER SEQRES 22 B 348 THR ASN THR CYS TYR ASP TYR LYS ILE LEU GLY THR LYS SEQRES 23 B 348 ASN CYS PHE PRO GLU TYR PRO ALA LYS ALA PRO LYS LEU SEQRES 24 B 348 ILE ASP CYS VAL PHE VAL SER GLY ILE VAL MET ARG GLU SEQRES 25 B 348 ASP GLY LYS CYS ASP LEU TYR SER GLY VAL GLY ASP THR SEQRES 26 B 348 GLN GLU GLY ARG MET MET ILE ASN TYR PRO PHE GLU GLY SEQRES 27 B 348 HIS GLY THR ILE VAL ASP ASN VAL ASN PHE FORMUL 3 HOH *606(H2 O) HELIX 1 AA1 ARG A 13 CYS A 16 5 4 HELIX 2 AA2 THR A 17 LYS A 29 1 13 HELIX 3 AA3 SER A 184 LEU A 188 5 5 HELIX 4 AA4 CYS A 189 SER A 195 1 7 HELIX 5 AA5 HIS A 201 GLY A 205 5 5 HELIX 6 AA6 THR A 265 PHE A 269 5 5 HELIX 7 AA7 ALA A 276 ILE A 280 5 5 HELIX 8 AA8 THR B 17 LYS B 29 1 13 HELIX 9 AA9 SER B 184 LEU B 188 5 5 HELIX 10 AB1 CYS B 189 SER B 195 1 7 HELIX 11 AB2 HIS B 201 GLY B 205 5 5 HELIX 12 AB3 THR B 265 PHE B 269 5 5 HELIX 13 AB4 ALA B 276 ILE B 280 5 5 SHEET 1 AA1 4 ALA A 34 PHE A 36 0 SHEET 2 AA1 4 GLN A 306 ILE A 312 -1 O ARG A 309 N VAL A 35 SHEET 3 AA1 4 CYS A 296 VAL A 302 -1 N SER A 300 O GLY A 308 SHEET 4 AA1 4 VAL A 283 MET A 290 -1 N PHE A 284 O GLY A 301 SHEET 1 AA2 5 THR A 38 LYS A 40 0 SHEET 2 AA2 5 GLU A 87 LEU A 90 1 O LEU A 90 N LYS A 40 SHEET 3 AA2 5 HIS A 76 GLY A 84 -1 N CYS A 81 O THR A 89 SHEET 4 AA2 5 THR A 59 GLU A 67 -1 N VAL A 66 O HIS A 76 SHEET 5 AA2 5 ASP A 46 TYR A 48 -1 N ASP A 46 O GLU A 67 SHEET 1 AA3 6 THR A 38 LYS A 40 0 SHEET 2 AA3 6 GLU A 87 LEU A 90 1 O LEU A 90 N LYS A 40 SHEET 3 AA3 6 HIS A 76 GLY A 84 -1 N CYS A 81 O THR A 89 SHEET 4 AA3 6 THR A 59 GLU A 67 -1 N VAL A 66 O HIS A 76 SHEET 5 AA3 6 PHE A 54 ILE A 56 -1 N PHE A 54 O HIS A 61 SHEET 6 AA3 6 ASN A 327 PHE A 328 1 O PHE A 328 N THR A 55 SHEET 1 AA4 4 GLU A 100 ILE A 107 0 SHEET 2 AA4 4 GLU A 110 ASP A 121 -1 O GLU A 110 N ILE A 107 SHEET 3 AA4 4 LYS A 124 GLY A 135 -1 O VAL A 129 N ARG A 117 SHEET 4 AA4 4 HIS A 141 SER A 145 -1 O HIS A 141 N ARG A 134 SHEET 1 AA5 4 ARG A 154 GLY A 157 0 SHEET 2 AA5 4 ILE A 163 HIS A 168 -1 O GLY A 164 N ILE A 156 SHEET 3 AA5 4 THR A 177 ILE A 182 -1 O ILE A 182 N ILE A 163 SHEET 4 AA5 4 LYS A 197 PRO A 198 -1 O LYS A 197 N PHE A 179 SHEET 1 AA6 4 TRP A 208 LEU A 216 0 SHEET 2 AA6 4 ILE A 222 THR A 233 -1 O ILE A 225 N ASN A 212 SHEET 3 AA6 4 VAL A 239 LYS A 251 -1 O TYR A 250 N ILE A 222 SHEET 4 AA6 4 THR A 256 GLY A 264 -1 O LEU A 263 N ILE A 245 SHEET 1 AA7 4 ALA B 34 PHE B 36 0 SHEET 2 AA7 4 GLN B 306 ILE B 312 -1 O ARG B 309 N VAL B 35 SHEET 3 AA7 4 CYS B 296 VAL B 302 -1 N SER B 300 O GLY B 308 SHEET 4 AA7 4 VAL B 283 MET B 290 -1 N PHE B 284 O GLY B 301 SHEET 1 AA8 5 THR B 38 LYS B 40 0 SHEET 2 AA8 5 GLU B 87 LEU B 90 1 O TYR B 88 N LYS B 40 SHEET 3 AA8 5 HIS B 76 GLY B 84 -1 N CYS B 81 O THR B 89 SHEET 4 AA8 5 THR B 59 GLU B 67 -1 N VAL B 66 O HIS B 76 SHEET 5 AA8 5 ASP B 46 TYR B 48 -1 N ASP B 46 O GLU B 67 SHEET 1 AA9 6 THR B 38 LYS B 40 0 SHEET 2 AA9 6 GLU B 87 LEU B 90 1 O TYR B 88 N LYS B 40 SHEET 3 AA9 6 HIS B 76 GLY B 84 -1 N CYS B 81 O THR B 89 SHEET 4 AA9 6 THR B 59 GLU B 67 -1 N VAL B 66 O HIS B 76 SHEET 5 AA9 6 PHE B 54 ILE B 56 -1 N PHE B 54 O HIS B 61 SHEET 6 AA9 6 ASN B 327 PHE B 328 1 O PHE B 328 N THR B 55 SHEET 1 AB1 4 GLU B 100 ILE B 107 0 SHEET 2 AB1 4 GLU B 110 ASP B 121 -1 O GLU B 110 N ILE B 107 SHEET 3 AB1 4 LYS B 124 GLY B 135 -1 O VAL B 129 N ARG B 117 SHEET 4 AB1 4 HIS B 141 SER B 145 -1 O THR B 144 N PHE B 132 SHEET 1 AB2 4 ARG B 154 GLY B 157 0 SHEET 2 AB2 4 ILE B 163 SER B 167 -1 O GLY B 164 N ILE B 156 SHEET 3 AB2 4 GLY B 178 ILE B 182 -1 O ILE B 180 N VAL B 165 SHEET 4 AB2 4 LYS B 197 PRO B 198 -1 O LYS B 197 N PHE B 179 SHEET 1 AB3 4 TRP B 208 LEU B 216 0 SHEET 2 AB3 4 ILE B 222 THR B 233 -1 O GLY B 223 N TYR B 215 SHEET 3 AB3 4 VAL B 239 LYS B 251 -1 O PHE B 248 N CYS B 224 SHEET 4 AB3 4 THR B 256 GLY B 264 -1 O LEU B 263 N ILE B 245 CRYST1 46.478 48.116 73.887 94.48 96.92 110.29 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021516 0.007955 0.003667 0.00000 SCALE2 0.000000 0.022158 0.002877 0.00000 SCALE3 0.000000 0.000000 0.013748 0.00000