HEADER TRANSFERASE 06-DEC-18 6Q4Y TITLE STRUCTURE OF MPT-2, A GDP-MAN-DEPENDENT MANNOSYLTRANSFERASE FROM TITLE 2 LEISHMANIA MEXICANA, IN COMPLEX WITH MANNOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LMXM MPT-2; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MEXICANA MHOM/GT/2001/U1103; SOURCE 3 ORGANISM_TAXID: 929439; SOURCE 4 GENE: LMXM_10_1240; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET28A(+) KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.F.SOBALA,A.MALES,L.M.BASTIDAS,T.WARD,M.F.SERNEE,J.E.RALTON, AUTHOR 2 T.L.NERO,S.COBBOLD,J.KLOEHN,M.VIERA-LARA,L.STANTON,E.HANSSEN, AUTHOR 3 M.W.PARKER,S.J.WILLIAMS,M.J.MCCONVILLE,G.J.DAVIES REVDAT 5 24-JAN-24 6Q4Y 1 REMARK REVDAT 4 17-FEB-21 6Q4Y 1 HETSYN REVDAT 3 29-JUL-20 6Q4Y 1 COMPND REMARK HETNAM SITE REVDAT 2 25-SEP-19 6Q4Y 1 JRNL REVDAT 1 18-SEP-19 6Q4Y 0 JRNL AUTH M.F.SERNEE,J.E.RALTON,T.L.NERO,L.F.SOBALA,J.KLOEHN, JRNL AUTH 2 M.A.VIEIRA-LARA,S.A.COBBOLD,L.STANTON,D.E.V.PIRES,E.HANSSEN, JRNL AUTH 3 A.MALES,T.WARD,L.M.BASTIDAS,P.L.VAN DER PEET,M.W.PARKER, JRNL AUTH 4 D.B.ASCHER,S.J.WILLIAMS,G.J.DAVIES,M.J.MCCONVILLE JRNL TITL A FAMILY OF DUAL-ACTIVITY GLYCOSYLTRANSFERASE-PHOSPHORYLASES JRNL TITL 2 MEDIATES MANNOGEN TURNOVER AND VIRULENCE IN LEISHMANIA JRNL TITL 3 PARASITES. JRNL REF CELL HOST MICROBE V. 26 385 2019 JRNL REFN ESSN 1934-6069 JRNL PMID 31513773 JRNL DOI 10.1016/J.CHOM.2019.08.009 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 60031 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3200 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4377 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.3760 REMARK 3 BIN FREE R VALUE SET COUNT : 221 REMARK 3 BIN FREE R VALUE : 0.3550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4799 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 306 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.19000 REMARK 3 B22 (A**2) : 1.27000 REMARK 3 B33 (A**2) : -1.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.111 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.109 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.194 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5160 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4651 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7028 ; 1.554 ; 1.658 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10853 ; 1.377 ; 1.590 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 658 ; 7.456 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 252 ;26.592 ;22.579 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 834 ;13.897 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;17.972 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 674 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5800 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1144 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2492 ; 2.696 ; 3.239 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2491 ; 2.694 ; 3.239 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3121 ; 3.934 ; 4.844 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3122 ; 3.933 ; 4.844 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2668 ; 3.230 ; 3.609 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2668 ; 3.230 ; 3.609 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3882 ; 4.929 ; 5.280 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5671 ; 6.913 ;37.644 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5621 ; 6.884 ;37.479 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 23 320 B 23 320 9157 0.10 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6Q4Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1200013306. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 - 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS 1.8.2-G5331DE77-RELEASE REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.3 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63306 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 71.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 0.94300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC 5.8.0238 REMARK 200 STARTING MODEL: 6Q50 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM TRISODIUM CITRATE, 18-22% W/V REMARK 280 PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.61850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.77500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.56900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.77500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.61850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.56900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 ARG A 163 REMARK 465 THR A 164 REMARK 465 GLU A 165 REMARK 465 GLY A 166 REMARK 465 SER A 167 REMARK 465 CYS A 168 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 LEU B 3 REMARK 465 LEU B 4 REMARK 465 ASN B 5 REMARK 465 THR B 6 REMARK 465 LYS B 7 REMARK 465 PRO B 8 REMARK 465 CYS B 9 REMARK 465 SER B 10 REMARK 465 LEU B 11 REMARK 465 ILE B 12 REMARK 465 PRO B 13 REMARK 465 ALA B 14 REMARK 465 LYS B 15 REMARK 465 GLU B 16 REMARK 465 ALA B 17 REMARK 465 PHE B 18 REMARK 465 GLU B 19 REMARK 465 ARG B 20 REMARK 465 GLU B 21 REMARK 465 LYS B 22 REMARK 465 GLN B 227 REMARK 465 LYS B 228 REMARK 465 ASP B 229 REMARK 465 GLY B 230 REMARK 465 ILE B 231 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 23 NZ REMARK 470 LYS A 177 CD CE NZ REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 TYR B 223 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU B 225 CG CD1 CD2 REMARK 470 ASP B 226 CG OD1 OD2 REMARK 470 LEU B 233 CB CG CD1 CD2 REMARK 470 LYS B 288 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 36 O HOH A 501 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 80 CG - CD - NE ANGL. DEV. = -14.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 145 72.76 -103.06 REMARK 500 ASN A 193 98.92 -67.41 REMARK 500 ASP B 145 70.93 -105.57 REMARK 500 ARG B 163 33.02 -155.63 REMARK 500 CYS B 168 74.48 -157.97 REMARK 500 CYS B 168 70.37 -156.06 REMARK 500 ASN B 193 93.01 -68.19 REMARK 500 ASP B 199 35.62 -99.07 REMARK 500 REMARK 500 REMARK: NULL DBREF 6Q4Y A 1 321 UNP E9AND8 E9AND8_LEIMU 1 321 DBREF 6Q4Y B 1 321 UNP E9AND8 E9AND8_LEIMU 1 321 SEQADV 6Q4Y MET A -19 UNP E9AND8 INITIATING METHIONINE SEQADV 6Q4Y GLY A -18 UNP E9AND8 EXPRESSION TAG SEQADV 6Q4Y SER A -17 UNP E9AND8 EXPRESSION TAG SEQADV 6Q4Y SER A -16 UNP E9AND8 EXPRESSION TAG SEQADV 6Q4Y HIS A -15 UNP E9AND8 EXPRESSION TAG SEQADV 6Q4Y HIS A -14 UNP E9AND8 EXPRESSION TAG SEQADV 6Q4Y HIS A -13 UNP E9AND8 EXPRESSION TAG SEQADV 6Q4Y HIS A -12 UNP E9AND8 EXPRESSION TAG SEQADV 6Q4Y HIS A -11 UNP E9AND8 EXPRESSION TAG SEQADV 6Q4Y HIS A -10 UNP E9AND8 EXPRESSION TAG SEQADV 6Q4Y SER A -9 UNP E9AND8 EXPRESSION TAG SEQADV 6Q4Y SER A -8 UNP E9AND8 EXPRESSION TAG SEQADV 6Q4Y GLY A -7 UNP E9AND8 EXPRESSION TAG SEQADV 6Q4Y LEU A -6 UNP E9AND8 EXPRESSION TAG SEQADV 6Q4Y VAL A -5 UNP E9AND8 EXPRESSION TAG SEQADV 6Q4Y PRO A -4 UNP E9AND8 EXPRESSION TAG SEQADV 6Q4Y ARG A -3 UNP E9AND8 EXPRESSION TAG SEQADV 6Q4Y GLY A -2 UNP E9AND8 EXPRESSION TAG SEQADV 6Q4Y SER A -1 UNP E9AND8 EXPRESSION TAG SEQADV 6Q4Y HIS A 0 UNP E9AND8 EXPRESSION TAG SEQADV 6Q4Y MET B -19 UNP E9AND8 INITIATING METHIONINE SEQADV 6Q4Y GLY B -18 UNP E9AND8 EXPRESSION TAG SEQADV 6Q4Y SER B -17 UNP E9AND8 EXPRESSION TAG SEQADV 6Q4Y SER B -16 UNP E9AND8 EXPRESSION TAG SEQADV 6Q4Y HIS B -15 UNP E9AND8 EXPRESSION TAG SEQADV 6Q4Y HIS B -14 UNP E9AND8 EXPRESSION TAG SEQADV 6Q4Y HIS B -13 UNP E9AND8 EXPRESSION TAG SEQADV 6Q4Y HIS B -12 UNP E9AND8 EXPRESSION TAG SEQADV 6Q4Y HIS B -11 UNP E9AND8 EXPRESSION TAG SEQADV 6Q4Y HIS B -10 UNP E9AND8 EXPRESSION TAG SEQADV 6Q4Y SER B -9 UNP E9AND8 EXPRESSION TAG SEQADV 6Q4Y SER B -8 UNP E9AND8 EXPRESSION TAG SEQADV 6Q4Y GLY B -7 UNP E9AND8 EXPRESSION TAG SEQADV 6Q4Y LEU B -6 UNP E9AND8 EXPRESSION TAG SEQADV 6Q4Y VAL B -5 UNP E9AND8 EXPRESSION TAG SEQADV 6Q4Y PRO B -4 UNP E9AND8 EXPRESSION TAG SEQADV 6Q4Y ARG B -3 UNP E9AND8 EXPRESSION TAG SEQADV 6Q4Y GLY B -2 UNP E9AND8 EXPRESSION TAG SEQADV 6Q4Y SER B -1 UNP E9AND8 EXPRESSION TAG SEQADV 6Q4Y HIS B 0 UNP E9AND8 EXPRESSION TAG SEQRES 1 A 341 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 341 LEU VAL PRO ARG GLY SER HIS MET GLY LEU LEU ASN THR SEQRES 3 A 341 LYS PRO CYS SER LEU ILE PRO ALA LYS GLU ALA PHE GLU SEQRES 4 A 341 ARG GLU LYS LYS ILE TYR GLY LYS ALA ILE LEU SER PHE SEQRES 5 A 341 ASP GLY VAL ASN GLY TYR ASP VAL TYR ASN CYS SER ILE SEQRES 6 A 341 PRO PHE THR TYR ASP GLY LYS THR TYR ILE PHE GLY ARG SEQRES 7 A 341 VAL GLU LYS LYS ASP GLU TRP VAL HIS SER ASN SER ILE SEQRES 8 A 341 LEU PHE GLU LYS VAL GLY GLU ASN ARG TYR ARG ARG HIS SEQRES 9 A 341 PRO ALA SER ILE THR TYR ASN LEU GLU ASP PRO PHE VAL SEQRES 10 A 341 VAL LYS ILE HIS GLY GLU MET VAL PHE GLY GLY THR HIS SEQRES 11 A 341 VAL THR LYS ASN GLY GLY LYS VAL SER ASP TYR ARG CYS SEQRES 12 A 341 GLU PHE TYR HIS GLY THR PRO PHE ASN LEU LYS TYR PHE SEQRES 13 A 341 SER SER GLY PRO SER LYS MET LYS ASP ILE ARG LEU VAL SEQRES 14 A 341 GLU LEU ALA ASP GLY LYS ILE GLY ILE PHE THR HIS PHE SEQRES 15 A 341 ARG THR GLU GLY SER CYS LEU THR GLY PHE THR THR ILE SEQRES 16 A 341 ASP LYS VAL GLU ASP LEU THR VAL GLU VAL ILE ASN SER SEQRES 17 A 341 ALA LYS LEU ILE ASN HIS ARG PRO PHE GLY ASP ALA TRP SEQRES 18 A 341 GLY GLY PRO SER GLN VAL TYR LEU LEU SER SER GLY LEU SEQRES 19 A 341 LEU GLY CYS ILE SER HIS HIS GLY TYR LEU LEU ASP GLN SEQRES 20 A 341 LYS ASP GLY ILE GLN LEU ARG ILE TYR ALA CYS THR SER SEQRES 21 A 341 PHE VAL PHE ASP PRO ALA THR TYR GLU VAL TYR ASN PHE SEQRES 22 A 341 LYS ILE ILE GLY THR LYS GLY CYS PHE PRO PRO CYS GLU SEQRES 23 A 341 PRO LYS LEU PRO HIS LEU ALA ASP CYS ALA PHE VAL SER SEQRES 24 A 341 GLY ILE GLU MET ARG ASN ASP GLY LYS CYS ASN LEU TYR SEQRES 25 A 341 SER GLY ILE GLY ASP VAL ALA GLU GLY TYR ILE VAL ILE SEQRES 26 A 341 ASP TYR PRO PHE GLU GLY TYR GLY LYS ILE VAL SER ASP SEQRES 27 A 341 VAL ALA PHE SEQRES 1 B 341 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 341 LEU VAL PRO ARG GLY SER HIS MET GLY LEU LEU ASN THR SEQRES 3 B 341 LYS PRO CYS SER LEU ILE PRO ALA LYS GLU ALA PHE GLU SEQRES 4 B 341 ARG GLU LYS LYS ILE TYR GLY LYS ALA ILE LEU SER PHE SEQRES 5 B 341 ASP GLY VAL ASN GLY TYR ASP VAL TYR ASN CYS SER ILE SEQRES 6 B 341 PRO PHE THR TYR ASP GLY LYS THR TYR ILE PHE GLY ARG SEQRES 7 B 341 VAL GLU LYS LYS ASP GLU TRP VAL HIS SER ASN SER ILE SEQRES 8 B 341 LEU PHE GLU LYS VAL GLY GLU ASN ARG TYR ARG ARG HIS SEQRES 9 B 341 PRO ALA SER ILE THR TYR ASN LEU GLU ASP PRO PHE VAL SEQRES 10 B 341 VAL LYS ILE HIS GLY GLU MET VAL PHE GLY GLY THR HIS SEQRES 11 B 341 VAL THR LYS ASN GLY GLY LYS VAL SER ASP TYR ARG CYS SEQRES 12 B 341 GLU PHE TYR HIS GLY THR PRO PHE ASN LEU LYS TYR PHE SEQRES 13 B 341 SER SER GLY PRO SER LYS MET LYS ASP ILE ARG LEU VAL SEQRES 14 B 341 GLU LEU ALA ASP GLY LYS ILE GLY ILE PHE THR HIS PHE SEQRES 15 B 341 ARG THR GLU GLY SER CYS LEU THR GLY PHE THR THR ILE SEQRES 16 B 341 ASP LYS VAL GLU ASP LEU THR VAL GLU VAL ILE ASN SER SEQRES 17 B 341 ALA LYS LEU ILE ASN HIS ARG PRO PHE GLY ASP ALA TRP SEQRES 18 B 341 GLY GLY PRO SER GLN VAL TYR LEU LEU SER SER GLY LEU SEQRES 19 B 341 LEU GLY CYS ILE SER HIS HIS GLY TYR LEU LEU ASP GLN SEQRES 20 B 341 LYS ASP GLY ILE GLN LEU ARG ILE TYR ALA CYS THR SER SEQRES 21 B 341 PHE VAL PHE ASP PRO ALA THR TYR GLU VAL TYR ASN PHE SEQRES 22 B 341 LYS ILE ILE GLY THR LYS GLY CYS PHE PRO PRO CYS GLU SEQRES 23 B 341 PRO LYS LEU PRO HIS LEU ALA ASP CYS ALA PHE VAL SER SEQRES 24 B 341 GLY ILE GLU MET ARG ASN ASP GLY LYS CYS ASN LEU TYR SEQRES 25 B 341 SER GLY ILE GLY ASP VAL ALA GLU GLY TYR ILE VAL ILE SEQRES 26 B 341 ASP TYR PRO PHE GLU GLY TYR GLY LYS ILE VAL SER ASP SEQRES 27 B 341 VAL ALA PHE HET BMA A 401 12 HET MAN A 402 12 HET BMA B 401A 12 HET MAN B 401B 12 HET MAN B 402 12 HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 BMA 2(C6 H12 O6) FORMUL 4 MAN 3(C6 H12 O6) FORMUL 8 HOH *306(H2 O) HELIX 1 AA1 MET A 1 ASN A 5 5 5 HELIX 2 AA2 SER A 10 LYS A 22 1 13 HELIX 3 AA3 LYS A 177 LEU A 181 5 5 HELIX 4 AA4 THR A 182 SER A 188 1 7 HELIX 5 AA5 THR A 258 PHE A 262 5 5 HELIX 6 AA6 LEU A 269 ALA A 273 5 5 HELIX 7 AA7 LYS B 177 LEU B 181 5 5 HELIX 8 AA8 THR B 182 SER B 188 1 7 HELIX 9 AA9 HIS B 194 GLY B 198 5 5 HELIX 10 AB1 THR B 258 PHE B 262 5 5 HELIX 11 AB2 LEU B 269 ALA B 273 5 5 SHEET 1 AA1 4 GLY A 26 ILE A 29 0 SHEET 2 AA1 4 ALA A 299 ILE A 305 -1 O VAL A 304 N GLY A 26 SHEET 3 AA1 4 CYS A 289 ILE A 295 -1 N LEU A 291 O ILE A 303 SHEET 4 AA1 4 ALA A 276 MET A 283 -1 N SER A 279 O TYR A 292 SHEET 1 AA2 5 SER A 31 ASP A 33 0 SHEET 2 AA2 5 ARG A 80 ARG A 83 1 O TYR A 81 N ASP A 33 SHEET 3 AA2 5 ASN A 69 GLY A 77 -1 N VAL A 76 O ARG A 80 SHEET 4 AA2 5 LYS A 52 GLU A 60 -1 N VAL A 59 O ASN A 69 SHEET 5 AA2 5 ASP A 39 TYR A 41 -1 N TYR A 41 O ARG A 58 SHEET 1 AA3 5 SER A 31 ASP A 33 0 SHEET 2 AA3 5 ARG A 80 ARG A 83 1 O TYR A 81 N ASP A 33 SHEET 3 AA3 5 ASN A 69 GLY A 77 -1 N VAL A 76 O ARG A 80 SHEET 4 AA3 5 LYS A 52 GLU A 60 -1 N VAL A 59 O ASN A 69 SHEET 5 AA3 5 PHE A 47 TYR A 49 -1 N PHE A 47 O TYR A 54 SHEET 1 AA4 4 GLU A 93 ILE A 100 0 SHEET 2 AA4 4 GLU A 103 ASN A 114 -1 O THR A 109 N GLU A 93 SHEET 3 AA4 4 LYS A 117 THR A 129 -1 O TYR A 126 N PHE A 106 SHEET 4 AA4 4 ASN A 132 SER A 138 -1 O SER A 137 N PHE A 125 SHEET 1 AA5 4 ARG A 147 GLU A 150 0 SHEET 2 AA5 4 ILE A 156 THR A 160 -1 O GLY A 157 N VAL A 149 SHEET 3 AA5 4 GLY A 171 ILE A 175 -1 O ILE A 175 N ILE A 156 SHEET 4 AA5 4 LYS A 190 LEU A 191 -1 O LYS A 190 N PHE A 172 SHEET 1 AA6 4 TRP A 201 LEU A 209 0 SHEET 2 AA6 4 LEU A 215 LEU A 225 -1 O ILE A 218 N SER A 205 SHEET 3 AA6 4 LEU A 233 PHE A 243 -1 O PHE A 241 N CYS A 217 SHEET 4 AA6 4 VAL A 250 GLY A 257 -1 O ILE A 256 N CYS A 238 SHEET 1 AA7 4 LYS B 27 ILE B 29 0 SHEET 2 AA7 4 ALA B 299 ASP B 306 -1 O TYR B 302 N ALA B 28 SHEET 3 AA7 4 LYS B 288 ILE B 295 -1 N LEU B 291 O ILE B 303 SHEET 4 AA7 4 ALA B 276 MET B 283 -1 N SER B 279 O TYR B 292 SHEET 1 AA8 5 SER B 31 ASP B 33 0 SHEET 2 AA8 5 ARG B 80 ARG B 83 1 O TYR B 81 N ASP B 33 SHEET 3 AA8 5 ASN B 69 GLY B 77 -1 N GLU B 74 O ARG B 82 SHEET 4 AA8 5 LYS B 52 GLU B 60 -1 N THR B 53 O LYS B 75 SHEET 5 AA8 5 ASP B 39 TYR B 41 -1 N TYR B 41 O ARG B 58 SHEET 1 AA9 5 SER B 31 ASP B 33 0 SHEET 2 AA9 5 ARG B 80 ARG B 83 1 O TYR B 81 N ASP B 33 SHEET 3 AA9 5 ASN B 69 GLY B 77 -1 N GLU B 74 O ARG B 82 SHEET 4 AA9 5 LYS B 52 GLU B 60 -1 N THR B 53 O LYS B 75 SHEET 5 AA9 5 PHE B 47 TYR B 49 -1 N PHE B 47 O TYR B 54 SHEET 1 AB1 4 GLU B 93 ILE B 100 0 SHEET 2 AB1 4 GLU B 103 ASN B 114 -1 O THR B 109 N GLU B 93 SHEET 3 AB1 4 LYS B 117 THR B 129 -1 O TYR B 126 N PHE B 106 SHEET 4 AB1 4 ASN B 132 SER B 138 -1 O SER B 137 N PHE B 125 SHEET 1 AB2 4 ARG B 147 GLU B 150 0 SHEET 2 AB2 4 ILE B 156 PHE B 162 -1 O GLY B 157 N VAL B 149 SHEET 3 AB2 4 LEU B 169 ILE B 175 -1 O ILE B 175 N ILE B 156 SHEET 4 AB2 4 LYS B 190 LEU B 191 -1 O LYS B 190 N PHE B 172 SHEET 1 AB3 4 TRP B 201 LEU B 209 0 SHEET 2 AB3 4 LEU B 215 LEU B 225 -1 O ILE B 218 N SER B 205 SHEET 3 AB3 4 LEU B 233 PHE B 243 -1 O PHE B 241 N CYS B 217 SHEET 4 AB3 4 VAL B 250 GLY B 257 -1 O TYR B 251 N VAL B 242 CRYST1 55.237 97.138 105.550 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018104 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010295 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009474 0.00000