HEADER ANTIBIOTIC 12-DEC-18 6Q77 TITLE STRUCTURE OF FUCOSYLATED D-ANTIMICROBIAL PEPTIDE SB12 IN COMPLEX WITH TITLE 2 THE FUCOSE-BINDING LECTIN PA-IIL AT 2.002 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: FUCOSE-BINDING LECTIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FUCOSE-BINDING LECTIN II (PA-IIL),FUCOSE-BINDING LECTIN PA- COMPND 5 IIL; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: FUCOSE-BINDING LECTIN PA-IIL LECTIN B FROM PSEUDOMONAS COMPND 8 AERUGINOSA; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: SB12; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: FUCOSYLATED D-ANTIMICROBIAL PEPTIDE SB12 INCOMPLETELY COMPND 14 RESOLVED. FULL SEQUENCE:(DLE)(DLY)(DAL)(DLE)(DLY)(DLY)(DLE)(DAL) COMPND 15 (DLY)(DLY)(DTY)(DLY) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: LECB, C0043_24310, C0044_25260, C0046_23510, CAZ10_21840, SOURCE 5 CW299_25270, DI492_13230, DT376_00595, SOURCE 6 PAERUG_E15_LONDON_28_01_14_00983, PAMH19_1713, RW109_RW109_02453; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630 KEYWDS ANTIMICROBIAL, LECTIN, COMPLEX, ANTIBIOTIC EXPDTA X-RAY DIFFRACTION AUTHOR S.BAERISWYL,A.STOCKER,J.-L.REYMOND REVDAT 4 16-OCT-24 6Q77 1 REMARK REVDAT 3 29-JUL-20 6Q77 1 REMARK LINK SITE REVDAT 2 01-MAY-19 6Q77 1 JRNL REVDAT 1 20-MAR-19 6Q77 0 JRNL AUTH S.BAERISWYL,B.H.GAN,T.N.SIRIWARDENA,R.VISINI,M.ROBADEY, JRNL AUTH 2 S.JAVOR,A.STOCKER,T.DARBRE,J.L.REYMOND JRNL TITL X-RAY CRYSTAL STRUCTURES OF SHORT ANTIMICROBIAL PEPTIDES AS JRNL TITL 2 PSEUDOMONAS AERUGINOSA LECTIN B COMPLEXES. JRNL REF ACS CHEM.BIOL. V. 14 758 2019 JRNL REFN ESSN 1554-8937 JRNL PMID 30830745 JRNL DOI 10.1021/ACSCHEMBIO.9B00047 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.300 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 9403 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 823 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.9671 - 3.6366 0.99 2682 141 0.1664 0.1875 REMARK 3 2 3.6366 - 2.8866 1.00 2688 140 0.2141 0.3132 REMARK 3 3 2.8866 - 2.5217 1.00 2696 132 0.2560 0.3509 REMARK 3 4 2.5217 - 2.2912 0.99 2676 135 0.2796 0.3070 REMARK 3 5 2.2912 - 2.1269 0.99 2657 135 0.3176 0.4118 REMARK 3 6 2.1269 - 2.0015 0.99 2675 140 0.3870 0.4079 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 895 REMARK 3 ANGLE : 0.937 1226 REMARK 3 CHIRALITY : 0.063 158 REMARK 3 PLANARITY : 0.004 161 REMARK 3 DIHEDRAL : 6.127 500 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): 67.9567 46.2109 15.2574 REMARK 3 T TENSOR REMARK 3 T11: 0.5244 T22: 0.7049 REMARK 3 T33: 0.4242 T12: 0.1376 REMARK 3 T13: 0.0613 T23: 0.0904 REMARK 3 L TENSOR REMARK 3 L11: 5.3890 L22: 0.4791 REMARK 3 L33: 4.4656 L12: 0.6180 REMARK 3 L13: 0.1404 L23: -0.9941 REMARK 3 S TENSOR REMARK 3 S11: -0.1310 S12: -1.1212 S13: -0.2970 REMARK 3 S21: 0.0915 S22: 0.0682 S23: 0.0740 REMARK 3 S31: 0.5124 S32: -0.1348 S33: 0.0149 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 48 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 67.7264 45.3275 12.3516 REMARK 3 T TENSOR REMARK 3 T11: 0.4488 T22: 0.6248 REMARK 3 T33: 0.4017 T12: 0.0892 REMARK 3 T13: 0.0568 T23: 0.0875 REMARK 3 L TENSOR REMARK 3 L11: 4.9732 L22: 1.5582 REMARK 3 L33: 6.3680 L12: 1.4612 REMARK 3 L13: -1.6511 L23: -0.2578 REMARK 3 S TENSOR REMARK 3 S11: -0.2999 S12: -0.7003 S13: -0.4096 REMARK 3 S21: 0.4240 S22: 0.1034 S23: 0.1478 REMARK 3 S31: 0.6430 S32: -0.7526 S33: 0.1054 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 70.1114 53.5251 8.1312 REMARK 3 T TENSOR REMARK 3 T11: 0.3526 T22: 0.5442 REMARK 3 T33: 0.3502 T12: 0.0405 REMARK 3 T13: -0.0006 T23: -0.0401 REMARK 3 L TENSOR REMARK 3 L11: 3.2727 L22: 1.3064 REMARK 3 L33: 4.2936 L12: 1.9554 REMARK 3 L13: -1.3535 L23: -0.6695 REMARK 3 S TENSOR REMARK 3 S11: -0.5032 S12: -0.9088 S13: -0.1257 REMARK 3 S21: 0.4571 S22: 0.4089 S23: 0.3640 REMARK 3 S31: -0.2107 S32: -0.0445 S33: 0.0711 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 76.8522 44.8345 12.3206 REMARK 3 T TENSOR REMARK 3 T11: 0.4572 T22: 0.5953 REMARK 3 T33: 0.5094 T12: 0.2011 REMARK 3 T13: -0.0292 T23: 0.0703 REMARK 3 L TENSOR REMARK 3 L11: 1.5787 L22: 2.8623 REMARK 3 L33: 3.2396 L12: 0.4054 REMARK 3 L13: -1.5006 L23: 1.7702 REMARK 3 S TENSOR REMARK 3 S11: -0.3581 S12: -0.8050 S13: -0.0052 REMARK 3 S21: 0.3406 S22: 0.0746 S23: -0.5131 REMARK 3 S31: 0.3523 S32: -0.0072 S33: 0.2463 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Q77 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1200013391. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.036790 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9462 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.002 REMARK 200 RESOLUTION RANGE LOW (A) : 48.952 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04900 REMARK 200 FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.80800 REMARK 200 R SYM FOR SHELL (I) : 0.80800 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM ACETATE TRIHYDRATE, 0.1 M REMARK 280 SODIUM CACODYLATE TRIHYDRATE PH 6.5, 30% W/V POLYETHYLENE GLYCOL REMARK 280 8,000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z+1/2 REMARK 290 4555 Y,-X,Z+1/2 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z+1/2 REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.95250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 48.95250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 48.95250 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 48.95250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 35 CG CD OE1 OE2 REMARK 470 ARG A 72 CD NE CZ NH1 NH2 REMARK 470 DLY B 6 CG CD CE NZ REMARK 470 DLE B 8 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N DLE B 2 C7 ZDC B 1 1.05 REMARK 500 O HOH A 325 O HOH A 328 1.97 REMARK 500 N DLE B 2 O7A ZDC B 1 2.01 REMARK 500 O THR A 25 O HOH A 301 2.07 REMARK 500 N DLE B 2 C6 ZDC B 1 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 323 O HOH A 323 6575 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 86 -45.08 -158.63 REMARK 500 DLE B 8 -79.54 174.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ZDC B 1 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 21 O REMARK 620 2 ASP A 101 OD1 136.4 REMARK 620 3 ASP A 101 OD2 154.2 45.2 REMARK 620 4 ASN A 103 OD1 85.0 69.0 72.1 REMARK 620 5 ASP A 104 OD2 77.7 70.4 115.1 94.7 REMARK 620 6 GLY A 114 O 54.4 94.2 102.2 30.6 87.1 REMARK 620 7 ZDC B 1 O2 82.8 131.7 114.1 157.1 101.6 133.7 REMARK 620 8 ZDC B 1 O3 134.8 65.1 71.0 133.6 76.7 157.0 66.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 95 OE1 REMARK 620 2 GLU A 95 OE2 53.5 REMARK 620 3 ASP A 99 OD1 81.9 80.4 REMARK 620 4 ASP A 101 OD1 84.0 137.4 90.7 REMARK 620 5 ASP A 104 OD1 86.2 72.3 152.2 113.0 REMARK 620 6 ASP A 104 OD2 123.5 122.4 152.3 82.0 51.3 REMARK 620 7 ZDC B 1 O3 149.2 139.5 75.7 75.5 122.9 76.6 REMARK 620 8 ZDC B 1 O4 136.3 82.9 94.6 139.6 76.9 74.9 67.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6Q6W RELATED DB: PDB REMARK 900 6Q6W CONTAINS THE SAME PROTEIN COMPLEXED WITH A CLOSE DERIVATIVE OF REMARK 900 THE FUCOSYLATED D-ANTIMICROBIAL PEPTIDE REMARK 900 RELATED ID: 6Q6X RELATED DB: PDB REMARK 900 6Q6X CONTAINS THE SAME PROTEIN COMPLEXED WITH A CLOSE DERIVATIVE OF REMARK 900 THE FUCOSYLATED D-ANTIMICROBIAL PEPTIDE DBREF1 6Q77 A 1 114 UNP A0A069Q9V4_PSEAI DBREF2 6Q77 A A0A069Q9V4 2 115 DBREF 6Q77 B 2 9 PDB 6Q77 6Q77 2 9 SEQRES 1 A 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR ARG SEQRES 2 A 114 PHE GLY VAL THR ALA PHE ALA ASN SER SER GLY THR GLN SEQRES 3 A 114 THR VAL ASN VAL LEU VAL ASN ASN GLU THR ALA ALA THR SEQRES 4 A 114 PHE SER GLY GLN SER THR ASN ASN ALA VAL ILE GLY THR SEQRES 5 A 114 GLN VAL LEU ASN SER GLY SER SER GLY LYS VAL GLN VAL SEQRES 6 A 114 GLN VAL SER VAL ASN GLY ARG PRO SER ASP LEU VAL SER SEQRES 7 A 114 ALA GLN VAL ILE LEU THR ASN GLU LEU ASN PHE ALA LEU SEQRES 8 A 114 VAL GLY SER GLU ASP GLY THR ASP ASN ASP TYR ASN ASP SEQRES 9 A 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 B 8 DLE DLY DAL DLE DLY DLY DLE DAL HET DLE B 2 8 HET DLY B 3 9 HET DAL B 4 5 HET DLE B 5 8 HET DLY B 6 5 HET DLY B 7 9 HET DLE B 8 5 HET DAL B 9 5 HET CA A 202 1 HET CA A 203 1 HET ZDC B 1 13 HETNAM DLE D-LEUCINE HETNAM DLY D-LYSINE HETNAM DAL D-ALANINE HETNAM CA CALCIUM ION HETNAM ZDC 3,7-ANHYDRO-2,8-DIDEOXY-L-GLYCERO-D-GLUCO-OCTONIC ACID FORMUL 2 DLE 3(C6 H13 N O2) FORMUL 2 DLY 3(C6 H14 N2 O2) FORMUL 2 DAL 2(C3 H7 N O2) FORMUL 3 CA 2(CA 2+) FORMUL 5 ZDC C8 H14 O6 FORMUL 6 HOH *28(H2 O) SHEET 1 AA1 4 VAL A 5 THR A 7 0 SHEET 2 AA1 4 LYS A 62 VAL A 69 -1 O VAL A 63 N PHE A 6 SHEET 3 AA1 4 ARG A 13 VAL A 32 -1 N LEU A 31 O GLN A 64 SHEET 4 AA1 4 ARG A 72 PRO A 73 0 SHEET 1 AA2 6 THR A 36 ASN A 56 0 SHEET 2 AA2 6 ARG A 13 VAL A 32 -1 N VAL A 30 O ALA A 37 SHEET 3 AA2 6 LYS A 62 VAL A 69 -1 O GLN A 64 N LEU A 31 SHEET 4 AA2 6 ALA A 105 TRP A 111 0 SHEET 5 AA2 6 LEU A 87 GLU A 95 -1 N ALA A 90 O ILE A 109 SHEET 6 AA2 6 ASP A 75 LEU A 83 -1 N ALA A 79 O LEU A 91 LINK C DLE B 2 N DLY B 3 1555 1555 1.33 LINK C DLY B 3 N DAL B 4 1555 1555 1.33 LINK C DAL B 4 N DLE B 5 1555 1555 1.33 LINK C DLE B 5 N DLY B 6 1555 1555 1.33 LINK C DLY B 6 N DLY B 7 1555 1555 1.33 LINK C DLY B 7 N DLE B 8 1555 1555 1.33 LINK C DLE B 8 N DAL B 9 1555 1555 1.33 LINK O ASN A 21 CA CA A 203 1555 1555 2.38 LINK OE1 GLU A 95 CA CA A 202 1555 1555 2.39 LINK OE2 GLU A 95 CA CA A 202 1555 1555 2.51 LINK OD1 ASP A 99 CA CA A 202 1555 1555 2.30 LINK OD1 ASP A 101 CA CA A 202 1555 1555 2.44 LINK OD1 ASP A 101 CA CA A 203 1555 1555 3.08 LINK OD2 ASP A 101 CA CA A 203 1555 1555 2.51 LINK OD1 ASN A 103 CA CA A 203 1555 1555 2.46 LINK OD1 ASP A 104 CA CA A 202 1555 1555 2.53 LINK OD2 ASP A 104 CA CA A 202 1555 1555 2.57 LINK OD2 ASP A 104 CA CA A 203 1555 1555 2.58 LINK O GLY A 114 CA CA A 203 1555 2875 2.46 LINK CA CA A 202 O3 ZDC B 1 1555 1555 2.54 LINK CA CA A 202 O4 ZDC B 1 1555 1555 2.50 LINK CA CA A 203 O2 ZDC B 1 1555 1555 2.52 LINK CA CA A 203 O3 ZDC B 1 1555 1555 2.52 CISPEP 1 TRP A 111 PRO A 112 0 -4.00 CRYST1 51.518 51.518 97.905 90.00 90.00 90.00 P 42 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019411 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019411 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010214 0.00000