HEADER TRANSFERASE 13-DEC-18 6Q7F TITLE CRYSTAL STRUCTURE OF EPHRIN A2 (EPHA2) RECEPTOR PROTEIN KINASE WITH TITLE 2 THE NVP-BHG712 DERIVATIVE ATDL18 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPHRIN TYPE-A RECEPTOR 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EPITHELIAL CELL KINASE,TYROSINE-PROTEIN KINASE RECEPTOR ECK; COMPND 5 EC: 2.7.10.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EPHA2, ECK; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS INHIBITOR, COMPLEX, PROTEIN TYROSINE KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.KUDLINZKI,A.TROESTER,K.WITT,V.L.LINHARD,S.L.GANDE,K.SAXENA, AUTHOR 2 H.SCHWALBE REVDAT 2 24-JAN-24 6Q7F 1 REMARK REVDAT 1 15-JAN-20 6Q7F 0 JRNL AUTH A.TROESTER,D.KUDLINZKI,K.SAXENA,S.GANDE,H.SCHWALBE JRNL TITL EFFECTS OF NVP-BHG712 CHEMICAL MODIFICATIONS ON EPHA2 JRNL TITL 2 BINDING AND AFFINITY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_3318: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 3 NUMBER OF REFLECTIONS : 76605 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.740 REMARK 3 FREE R VALUE TEST SET COUNT : 2099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.3746 - 2.9677 0.97 5199 146 0.1432 0.1860 REMARK 3 2 2.9677 - 2.3557 0.99 5203 147 0.1664 0.1641 REMARK 3 3 2.3557 - 2.0579 0.98 5177 146 0.1537 0.1801 REMARK 3 4 2.0579 - 1.8698 0.96 5053 142 0.1698 0.2047 REMARK 3 5 1.8698 - 1.7358 0.96 5098 144 0.1782 0.2175 REMARK 3 6 1.7358 - 1.6334 0.96 5050 142 0.1976 0.1959 REMARK 3 7 1.6334 - 1.5516 0.96 5049 142 0.2210 0.2254 REMARK 3 8 1.5516 - 1.4841 0.96 5040 142 0.2487 0.2646 REMARK 3 9 1.4841 - 1.4269 0.94 4946 140 0.2835 0.3152 REMARK 3 10 1.4269 - 1.3777 0.94 4962 140 0.3011 0.3444 REMARK 3 11 1.3777 - 1.3346 0.94 4985 140 0.3262 0.3436 REMARK 3 12 1.3346 - 1.2965 0.94 4887 138 0.3496 0.3733 REMARK 3 13 1.2965 - 1.2623 0.94 4908 138 0.3678 0.3886 REMARK 3 14 1.2623 - 1.2315 0.93 4891 138 0.3829 0.3609 REMARK 3 15 1.2315 - 1.2035 0.77 4058 114 0.4072 0.3753 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2353 REMARK 3 ANGLE : 1.062 3196 REMARK 3 CHIRALITY : 0.352 337 REMARK 3 PLANARITY : 0.006 407 REMARK 3 DIHEDRAL : 17.288 1449 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 605 THROUGH 632 ) REMARK 3 ORIGIN FOR THE GROUP (A): -83.3402 -29.1828 82.7303 REMARK 3 T TENSOR REMARK 3 T11: 0.2540 T22: 0.2557 REMARK 3 T33: 0.2706 T12: -0.0196 REMARK 3 T13: 0.0010 T23: -0.0914 REMARK 3 L TENSOR REMARK 3 L11: 0.1460 L22: 0.8740 REMARK 3 L33: 0.3116 L12: 0.0345 REMARK 3 L13: -0.1208 L23: -0.0250 REMARK 3 S TENSOR REMARK 3 S11: 0.0011 S12: -0.2275 S13: -0.0495 REMARK 3 S21: -0.0423 S22: 0.1167 S23: -0.0637 REMARK 3 S31: 0.1831 S32: 0.1008 S33: 0.0016 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 633 THROUGH 653 ) REMARK 3 ORIGIN FOR THE GROUP (A): -85.1698 -29.5722 84.5052 REMARK 3 T TENSOR REMARK 3 T11: 0.3067 T22: 0.1851 REMARK 3 T33: 0.2118 T12: -0.0090 REMARK 3 T13: 0.0206 T23: -0.0330 REMARK 3 L TENSOR REMARK 3 L11: 0.2653 L22: 0.5064 REMARK 3 L33: 0.5791 L12: 0.1893 REMARK 3 L13: -0.2338 L23: 0.2307 REMARK 3 S TENSOR REMARK 3 S11: -0.0319 S12: 0.0210 S13: 0.0017 REMARK 3 S21: -0.2217 S22: 0.2489 S23: -0.2015 REMARK 3 S31: 0.2931 S32: 0.2666 S33: 0.0037 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 654 THROUGH 669 ) REMARK 3 ORIGIN FOR THE GROUP (A): -93.1990 -25.4965 94.2585 REMARK 3 T TENSOR REMARK 3 T11: 0.3035 T22: 0.1696 REMARK 3 T33: 0.3396 T12: 0.0489 REMARK 3 T13: 0.0229 T23: 0.0364 REMARK 3 L TENSOR REMARK 3 L11: 0.1083 L22: 0.0326 REMARK 3 L33: 0.2394 L12: 0.0635 REMARK 3 L13: 0.1339 L23: 0.0410 REMARK 3 S TENSOR REMARK 3 S11: 0.0468 S12: -0.0383 S13: 0.0923 REMARK 3 S21: 0.3128 S22: 0.2362 S23: 0.4662 REMARK 3 S31: -0.4408 S32: 0.0450 S33: 0.0568 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 670 THROUGH 687 ) REMARK 3 ORIGIN FOR THE GROUP (A): -91.7818 -22.2884 83.5534 REMARK 3 T TENSOR REMARK 3 T11: 0.1914 T22: 0.1279 REMARK 3 T33: 0.1894 T12: -0.0154 REMARK 3 T13: -0.0145 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.0406 L22: 0.1413 REMARK 3 L33: 0.1666 L12: -0.0187 REMARK 3 L13: -0.1147 L23: 0.1540 REMARK 3 S TENSOR REMARK 3 S11: -0.0033 S12: 0.0470 S13: -0.0617 REMARK 3 S21: -0.1957 S22: 0.0221 S23: 0.3782 REMARK 3 S31: 0.1039 S32: -0.0697 S33: 0.0002 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 688 THROUGH 712 ) REMARK 3 ORIGIN FOR THE GROUP (A): -76.9834 -12.2185 82.1737 REMARK 3 T TENSOR REMARK 3 T11: 0.1691 T22: 0.1475 REMARK 3 T33: 0.1423 T12: -0.0135 REMARK 3 T13: -0.0018 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.4848 L22: 0.0376 REMARK 3 L33: 0.0177 L12: -0.0896 REMARK 3 L13: -0.1605 L23: 0.0155 REMARK 3 S TENSOR REMARK 3 S11: -0.0554 S12: 0.0089 S13: -0.0310 REMARK 3 S21: -0.1888 S22: 0.0344 S23: -0.0611 REMARK 3 S31: 0.1468 S32: 0.0685 S33: -0.0008 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 713 THROUGH 752 ) REMARK 3 ORIGIN FOR THE GROUP (A): -86.3060 -6.0195 87.1601 REMARK 3 T TENSOR REMARK 3 T11: 0.1197 T22: 0.1430 REMARK 3 T33: 0.1174 T12: -0.0039 REMARK 3 T13: 0.0079 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.6358 L22: 0.5319 REMARK 3 L33: 0.1985 L12: 0.0513 REMARK 3 L13: -0.0669 L23: 0.3050 REMARK 3 S TENSOR REMARK 3 S11: -0.0060 S12: 0.0038 S13: -0.0080 REMARK 3 S21: -0.0516 S22: 0.0103 S23: 0.0520 REMARK 3 S31: 0.0443 S32: -0.0094 S33: 0.0006 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 753 THROUGH 795 ) REMARK 3 ORIGIN FOR THE GROUP (A): -84.8878 -8.2222 101.8362 REMARK 3 T TENSOR REMARK 3 T11: 0.1689 T22: 0.1734 REMARK 3 T33: 0.1236 T12: -0.0046 REMARK 3 T13: 0.0025 T23: 0.0188 REMARK 3 L TENSOR REMARK 3 L11: 0.6154 L22: 0.2918 REMARK 3 L33: 0.0945 L12: 0.1785 REMARK 3 L13: 0.1039 L23: -0.1085 REMARK 3 S TENSOR REMARK 3 S11: 0.0356 S12: -0.1133 S13: -0.0525 REMARK 3 S21: 0.0399 S22: -0.0218 S23: -0.0256 REMARK 3 S31: 0.0432 S32: -0.0049 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 796 THROUGH 822 ) REMARK 3 ORIGIN FOR THE GROUP (A): -76.5412 -0.9977 95.5633 REMARK 3 T TENSOR REMARK 3 T11: 0.1110 T22: 0.1620 REMARK 3 T33: 0.1390 T12: -0.0025 REMARK 3 T13: 0.0052 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 0.2340 L22: 0.3619 REMARK 3 L33: 0.4117 L12: 0.1014 REMARK 3 L13: -0.1230 L23: -0.0499 REMARK 3 S TENSOR REMARK 3 S11: -0.0171 S12: -0.0504 S13: 0.0169 REMARK 3 S21: -0.0111 S22: -0.0023 S23: -0.0610 REMARK 3 S31: 0.0064 S32: 0.0621 S33: -0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 823 THROUGH 843 ) REMARK 3 ORIGIN FOR THE GROUP (A): -74.1628 3.8357 102.7132 REMARK 3 T TENSOR REMARK 3 T11: 0.1567 T22: 0.2060 REMARK 3 T33: 0.1641 T12: -0.0038 REMARK 3 T13: -0.0204 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 0.5026 L22: 0.7816 REMARK 3 L33: 0.1155 L12: -0.1705 REMARK 3 L13: 0.0000 L23: 0.2904 REMARK 3 S TENSOR REMARK 3 S11: -0.0246 S12: -0.1154 S13: 0.0611 REMARK 3 S21: 0.2342 S22: -0.0249 S23: -0.1450 REMARK 3 S31: -0.2051 S32: 0.0407 S33: -0.0001 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 844 THROUGH 863 ) REMARK 3 ORIGIN FOR THE GROUP (A): -86.2273 6.8117 99.0007 REMARK 3 T TENSOR REMARK 3 T11: 0.1406 T22: 0.1621 REMARK 3 T33: 0.1585 T12: 0.0027 REMARK 3 T13: -0.0121 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 0.0999 L22: 0.1498 REMARK 3 L33: 0.2439 L12: 0.0228 REMARK 3 L13: 0.1231 L23: -0.0933 REMARK 3 S TENSOR REMARK 3 S11: -0.0582 S12: -0.1291 S13: 0.1170 REMARK 3 S21: -0.0112 S22: -0.0116 S23: 0.0031 REMARK 3 S31: -0.0614 S32: -0.0399 S33: -0.0002 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 864 THROUGH 881 ) REMARK 3 ORIGIN FOR THE GROUP (A): -89.3141 8.2541 84.1004 REMARK 3 T TENSOR REMARK 3 T11: 0.1827 T22: 0.1525 REMARK 3 T33: 0.1836 T12: -0.0029 REMARK 3 T13: -0.0223 T23: 0.0249 REMARK 3 L TENSOR REMARK 3 L11: 0.0476 L22: 0.0880 REMARK 3 L33: 0.1030 L12: -0.0369 REMARK 3 L13: 0.0346 L23: 0.0434 REMARK 3 S TENSOR REMARK 3 S11: 0.0196 S12: 0.0681 S13: 0.1433 REMARK 3 S21: -0.1308 S22: 0.0035 S23: 0.2501 REMARK 3 S31: -0.0603 S32: -0.0451 S33: 0.0005 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 882 THROUGH 896 ) REMARK 3 ORIGIN FOR THE GROUP (A): -64.3841 15.0155 91.0330 REMARK 3 T TENSOR REMARK 3 T11: 0.2540 T22: 0.2231 REMARK 3 T33: 0.3594 T12: -0.0068 REMARK 3 T13: 0.0184 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 0.2720 L22: 0.0593 REMARK 3 L33: 0.1313 L12: 0.0885 REMARK 3 L13: -0.1210 L23: -0.1324 REMARK 3 S TENSOR REMARK 3 S11: -0.1181 S12: -0.0287 S13: -0.1360 REMARK 3 S21: -0.1085 S22: 0.0652 S23: -0.2929 REMARK 3 S31: -0.0350 S32: 0.1226 S33: -0.0015 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Q7F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1200013426. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS XDSAPP 2.0 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76625 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.204 REMARK 200 RESOLUTION RANGE LOW (A) : 38.355 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 6.980 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.8400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.74 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6FNF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 37.5 % MPD_PEG1000_PEG3350, 125 MM REMARK 280 MORPHEUS CARBOXYLIC ACIDS MIX, 100 MM MORPHEUS BUFFER SYSTEM 3 REMARK 280 (TRIS/BICINE), PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 53.53100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 595 REMARK 465 ASP A 596 REMARK 465 PRO A 597 REMARK 465 ASN A 598 REMARK 465 GLN A 599 REMARK 465 ALA A 600 REMARK 465 VAL A 601 REMARK 465 LEU A 602 REMARK 465 LYS A 603 REMARK 465 PHE A 604 REMARK 465 SER A 635 REMARK 465 SER A 636 REMARK 465 GLY A 637 REMARK 465 LYS A 638 REMARK 465 LYS A 639 REMARK 465 LEU A 760 REMARK 465 SER A 761 REMARK 465 ARG A 762 REMARK 465 VAL A 763 REMARK 465 LEU A 764 REMARK 465 GLU A 765 REMARK 465 ASP A 766 REMARK 465 ASP A 767 REMARK 465 PRO A 768 REMARK 465 GLU A 769 REMARK 465 ALA A 770 REMARK 465 THR A 771 REMARK 465 TYR A 772 REMARK 465 THR A 773 REMARK 465 THR A 774 REMARK 465 SER A 775 REMARK 465 GLY A 776 REMARK 465 GLY A 777 REMARK 465 LYS A 778 REMARK 465 ILE A 779 REMARK 465 SER A 897 REMARK 465 THR A 898 REMARK 465 SER A 899 REMARK 465 GLY A 900 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 782 CG - CD - NE ANGL. DEV. = -18.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 624 69.31 -153.32 REMARK 500 ARG A 738 -19.41 79.09 REMARK 500 TRP A 819 -126.86 52.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1383 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A1384 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A1385 DISTANCE = 6.14 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HNZ A 1001 DBREF 6Q7F A 596 900 UNP P29317 EPHA2_HUMAN 596 900 SEQADV 6Q7F GLY A 595 UNP P29317 EXPRESSION TAG SEQRES 1 A 306 GLY ASP PRO ASN GLN ALA VAL LEU LYS PHE THR THR GLU SEQRES 2 A 306 ILE HIS PRO SER CYS VAL THR ARG GLN LYS VAL ILE GLY SEQRES 3 A 306 ALA GLY GLU PHE GLY GLU VAL TYR LYS GLY MET LEU LYS SEQRES 4 A 306 THR SER SER GLY LYS LYS GLU VAL PRO VAL ALA ILE LYS SEQRES 5 A 306 THR LEU LYS ALA GLY TYR THR GLU LYS GLN ARG VAL ASP SEQRES 6 A 306 PHE LEU GLY GLU ALA GLY ILE MET GLY GLN PHE SER HIS SEQRES 7 A 306 HIS ASN ILE ILE ARG LEU GLU GLY VAL ILE SER LYS TYR SEQRES 8 A 306 LYS PRO MET MET ILE ILE THR GLU TYR MET GLU ASN GLY SEQRES 9 A 306 ALA LEU ASP LYS PHE LEU ARG GLU LYS ASP GLY GLU PHE SEQRES 10 A 306 SER VAL LEU GLN LEU VAL GLY MET LEU ARG GLY ILE ALA SEQRES 11 A 306 ALA GLY MET LYS TYR LEU ALA ASN MET ASN TYR VAL HIS SEQRES 12 A 306 ARG ASP LEU ALA ALA ARG ASN ILE LEU VAL ASN SER ASN SEQRES 13 A 306 LEU VAL CYS LYS VAL SER ASP PHE GLY LEU SER ARG VAL SEQRES 14 A 306 LEU GLU ASP ASP PRO GLU ALA THR TYR THR THR SER GLY SEQRES 15 A 306 GLY LYS ILE PRO ILE ARG TRP THR ALA PRO GLU ALA ILE SEQRES 16 A 306 SER TYR ARG LYS PHE THR SER ALA SER ASP VAL TRP SER SEQRES 17 A 306 PHE GLY ILE VAL MET TRP GLU VAL MET THR TYR GLY GLU SEQRES 18 A 306 ARG PRO TYR TRP GLU LEU SER ASN HIS GLU VAL MET LYS SEQRES 19 A 306 ALA ILE ASN ASP GLY PHE ARG LEU PRO THR PRO MET ASP SEQRES 20 A 306 CYS PRO SER ALA ILE TYR GLN LEU MET MET GLN CYS TRP SEQRES 21 A 306 GLN GLN GLU ARG ALA ARG ARG PRO LYS PHE ALA ASP ILE SEQRES 22 A 306 VAL SER ILE LEU ASP LYS LEU ILE ARG ALA PRO ASP SER SEQRES 23 A 306 LEU LYS THR LEU ALA ASP PHE ASP PRO ARG VAL SER ILE SEQRES 24 A 306 ARG LEU PRO SER THR SER GLY HET HNZ A1001 76 HETNAM HNZ 3-[(4-IMIDAZOL-1-YL-6-PIPERAZIN-1-YL-1,3,5-TRIAZIN-2- HETNAM 2 HNZ YL)AMINO]-4-METHYL-~{N}-[3-(TRIFLUOROMETHYL) HETNAM 3 HNZ PHENYL]BENZAMIDE FORMUL 2 HNZ C25 H24 F3 N9 O FORMUL 3 HOH *285(H2 O) HELIX 1 AA1 HIS A 609 SER A 611 5 3 HELIX 2 AA2 THR A 653 PHE A 670 1 18 HELIX 3 AA3 ALA A 699 LYS A 707 1 9 HELIX 4 AA4 SER A 712 MET A 733 1 22 HELIX 5 AA5 ALA A 741 ARG A 743 5 3 HELIX 6 AA6 PRO A 780 THR A 784 5 5 HELIX 7 AA7 ALA A 785 ARG A 792 1 8 HELIX 8 AA8 THR A 795 THR A 812 1 18 HELIX 9 AA9 SER A 822 GLY A 833 1 12 HELIX 10 AB1 PRO A 843 TRP A 854 1 12 HELIX 11 AB2 GLU A 857 ARG A 861 5 5 HELIX 12 AB3 LYS A 863 ALA A 877 1 15 HELIX 13 AB4 PRO A 878 LYS A 882 5 5 SHEET 1 AA1 5 VAL A 613 ALA A 621 0 SHEET 2 AA1 5 GLU A 626 LEU A 632 -1 O VAL A 627 N ILE A 619 SHEET 3 AA1 5 VAL A 641 LEU A 648 -1 O ILE A 645 N TYR A 628 SHEET 4 AA1 5 MET A 688 GLU A 693 -1 O ILE A 690 N LYS A 646 SHEET 5 AA1 5 LEU A 678 ILE A 682 -1 N GLU A 679 O ILE A 691 SHEET 1 AA2 2 ILE A 745 VAL A 747 0 SHEET 2 AA2 2 CYS A 753 VAL A 755 -1 O LYS A 754 N LEU A 746 CISPEP 1 LYS A 686 PRO A 687 0 -2.46 SITE 1 AC1 26 ILE A 619 GLY A 620 VAL A 627 ALA A 644 SITE 2 AC1 26 LYS A 646 GLU A 663 MET A 667 PHE A 670 SITE 3 AC1 26 ILE A 675 ILE A 676 ILE A 690 THR A 692 SITE 4 AC1 26 TYR A 694 MET A 695 LEU A 730 TYR A 735 SITE 5 AC1 26 ARG A 743 ASN A 744 LEU A 746 VAL A 755 SITE 6 AC1 26 SER A 756 ASP A 757 PHE A 758 HOH A1152 SITE 7 AC1 26 HOH A1173 HOH A1268 CRYST1 32.671 107.062 40.524 90.00 108.83 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030608 0.000000 0.010438 0.00000 SCALE2 0.000000 0.009340 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026072 0.00000