HEADER MEMBRANE PROTEIN 13-DEC-18 6Q81 TITLE STRUCTURE OF P-GLYCOPROTEIN(ABCB1) IN THE POST-HYDROLYTIC STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: P-GLYCOPROTEIN (ABCB1); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_TAXID: 10090; SOURCE 4 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 4932 KEYWDS P-GLYCOPROTEIN; ABCB1; ATP-BINDING CASSETTE; TRANSPORTER; MEMBRANE KEYWDS 2 PROTEIN; PROTEIN STRUCTURE, MEMBRANE PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR R.C.FORD,N.THONGHIN,R.F.COLLINS,A.BARBIERI,T.SHAFI,A.SIEBERT REVDAT 2 03-APR-19 6Q81 1 JRNL REVDAT 1 26-DEC-18 6Q81 0 JRNL AUTH N.THONGHIN,R.F.COLLINS,A.BARBIERI,T.SHAFI,A.SIEBERT,R.C.FORD JRNL TITL NOVEL FEATURES IN THE STRUCTURE OF P-GLYCOPROTEIN (ABCB1) IN JRNL TITL 2 THE POST-HYDROLYTIC STATE AS DETERMINED AT 7.9 ANGSTROM JRNL TITL 3 RESOLUTION. JRNL REF BMC STRUCT.BIOL. V. 18 17 2018 JRNL REFN ESSN 1472-6807 JRNL PMID 30545335 JRNL DOI 10.1186/S12900-018-0098-Z REMARK 2 REMARK 2 RESOLUTION. 7.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION, RELION, RELION REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 7.900 REMARK 3 NUMBER OF PARTICLES : 135357 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING ONLY REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6Q81 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1200013350. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : P-GLYCOPROTEIN TRAPPED IN THE REMARK 245 POST-HYDROLYTIC STATE. REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : ATP AND VANADATE ADDED REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 70.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 55040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LEU A 3 REMARK 465 GLU A 4 REMARK 465 GLU A 5 REMARK 465 ASP A 6 REMARK 465 LEU A 7 REMARK 465 LYS A 8 REMARK 465 GLY A 9 REMARK 465 ARG A 10 REMARK 465 ALA A 11 REMARK 465 ASP A 12 REMARK 465 LYS A 13 REMARK 465 ASN A 14 REMARK 465 PHE A 15 REMARK 465 SER A 16 REMARK 465 LYS A 17 REMARK 465 MET A 18 REMARK 465 GLY A 19 REMARK 465 LYS A 20 REMARK 465 LYS A 21 REMARK 465 SER A 22 REMARK 465 LYS A 23 REMARK 465 LYS A 24 REMARK 465 GLU A 25 REMARK 465 LYS A 26 REMARK 465 LYS A 27 REMARK 465 GLU A 28 REMARK 465 LYS A 29 REMARK 465 LYS A 30 REMARK 465 PRO A 31 REMARK 465 ALA A 32 REMARK 465 ALA A 627 REMARK 465 GLY A 628 REMARK 465 ASN A 629 REMARK 465 GLU A 630 REMARK 465 ILE A 631 REMARK 465 GLU A 632 REMARK 465 LEU A 633 REMARK 465 GLY A 634 REMARK 465 ASN A 635 REMARK 465 GLU A 636 REMARK 465 ALA A 637 REMARK 465 CYS A 638 REMARK 465 LYS A 639 REMARK 465 SER A 640 REMARK 465 LYS A 641 REMARK 465 ASP A 642 REMARK 465 GLU A 643 REMARK 465 ILE A 644 REMARK 465 ASP A 645 REMARK 465 ASN A 646 REMARK 465 LEU A 647 REMARK 465 ASP A 648 REMARK 465 MET A 649 REMARK 465 SER A 650 REMARK 465 SER A 651 REMARK 465 LYS A 652 REMARK 465 ASP A 653 REMARK 465 SER A 654 REMARK 465 GLY A 655 REMARK 465 SER A 656 REMARK 465 SER A 657 REMARK 465 LEU A 658 REMARK 465 ILE A 659 REMARK 465 ARG A 660 REMARK 465 ARG A 661 REMARK 465 ARG A 662 REMARK 465 SER A 663 REMARK 465 THR A 664 REMARK 465 ARG A 665 REMARK 465 LYS A 666 REMARK 465 SER A 667 REMARK 465 ILE A 668 REMARK 465 CYS A 669 REMARK 465 GLY A 670 REMARK 465 PRO A 671 REMARK 465 HIS A 672 REMARK 465 ASP A 673 REMARK 465 GLN A 674 REMARK 465 ASP A 675 REMARK 465 ARG A 676 REMARK 465 LYS A 677 REMARK 465 LEU A 678 REMARK 465 SER A 679 REMARK 465 THR A 680 REMARK 465 LYS A 681 REMARK 465 GLU A 682 REMARK 465 ALA A 683 REMARK 465 GLY A 1272 REMARK 465 ALA A 1273 REMARK 465 LYS A 1274 REMARK 465 ARG A 1275 REMARK 465 SER A 1276 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 323 CA SER A 323 CB 0.110 REMARK 500 SER A 425 CB SER A 425 OG 0.085 REMARK 500 ARG A 460 CZ ARG A 460 NH2 0.078 REMARK 500 ARG A 523 NE ARG A 523 CZ 0.090 REMARK 500 PHE A 771 CG PHE A 771 CD1 0.092 REMARK 500 SER A 827 CA SER A 827 CB 0.106 REMARK 500 TYR A 916 CZ TYR A 916 CE2 0.082 REMARK 500 ARG A 954 CD ARG A 954 NE 0.120 REMARK 500 PHE A 979 CG PHE A 979 CD1 0.094 REMARK 500 ARG A1081 CD ARG A1081 NE 0.105 REMARK 500 ARG A1188 CD ARG A1188 NE 0.121 REMARK 500 ARG A1218 CZ ARG A1218 NH2 0.084 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 40 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 40 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 TYR A 41 CB - CG - CD1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 47 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 TYR A 49 CB - CG - CD1 ANGL. DEV. = -3.8 DEGREES REMARK 500 VAL A 62 CA - CB - CG2 ANGL. DEV. = -9.8 DEGREES REMARK 500 ASP A 95 CB - CG - OD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 PHE A 100 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 PHE A 100 CB - CG - CD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 MET A 107 CG - SD - CE ANGL. DEV. = -12.1 DEGREES REMARK 500 TYR A 110 CB - CG - CD1 ANGL. DEV. = 4.3 DEGREES REMARK 500 TYR A 110 CZ - CE2 - CD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG A 144 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 PHE A 159 CB - CG - CD2 ANGL. DEV. = 4.3 DEGREES REMARK 500 PHE A 159 CB - CG - CD1 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG A 170 NE - CZ - NH2 ANGL. DEV. = -6.0 DEGREES REMARK 500 PHE A 189 CB - CA - C ANGL. DEV. = 12.1 DEGREES REMARK 500 PHE A 196 CB - CG - CD1 ANGL. DEV. = -4.8 DEGREES REMARK 500 PHE A 197 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 206 NE - CZ - NH2 ANGL. DEV. = 5.8 DEGREES REMARK 500 LEU A 232 CB - CG - CD2 ANGL. DEV. = 11.4 DEGREES REMARK 500 ARG A 258 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 TYR A 273 CB - CG - CD1 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 282 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 TYR A 303 CB - CG - CD1 ANGL. DEV. = 3.8 DEGREES REMARK 500 TYR A 306 CB - CG - CD2 ANGL. DEV. = 5.3 DEGREES REMARK 500 TYR A 306 CB - CG - CD1 ANGL. DEV. = -6.9 DEGREES REMARK 500 TYR A 312 CB - CG - CD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 TYR A 312 CB - CG - CD1 ANGL. DEV. = -5.0 DEGREES REMARK 500 ASP A 366 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 PHE A 390 CB - CG - CD1 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 400 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG A 400 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 TYR A 440 CB - CG - CD1 ANGL. DEV. = -5.7 DEGREES REMARK 500 TYR A 440 CG - CD1 - CE1 ANGL. DEV. = -7.5 DEGREES REMARK 500 ASP A 444 CB - CG - OD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 MET A 446 CG - SD - CE ANGL. DEV. = -10.9 DEGREES REMARK 500 ASP A 450 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 455 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 455 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 460 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 TYR A 461 CG - CD2 - CE2 ANGL. DEV. = -7.2 DEGREES REMARK 500 TYR A 461 CZ - CE2 - CD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 PRO A 473 N - CD - CG ANGL. DEV. = 10.3 DEGREES REMARK 500 THR A 478 CA - CB - CG2 ANGL. DEV. = -11.0 DEGREES REMARK 500 ALA A 503 N - CA - CB ANGL. DEV. = 10.0 DEGREES REMARK 500 TYR A 506 CB - CG - CD2 ANGL. DEV. = -5.3 DEGREES REMARK 500 TYR A 506 CB - CG - CD1 ANGL. DEV. = 4.4 DEGREES REMARK 500 PHE A 516 CB - CG - CD2 ANGL. DEV. = -4.7 DEGREES REMARK 500 PHE A 516 CB - CG - CD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 124 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 41 42.67 176.24 REMARK 500 SER A 88 -68.06 -108.74 REMARK 500 SER A 92 -16.29 -147.51 REMARK 500 ARG A 97 -72.43 -98.08 REMARK 500 CYS A 133 -68.64 -109.74 REMARK 500 GLU A 155 -109.44 58.51 REMARK 500 HIS A 162 -163.81 51.76 REMARK 500 PHE A 196 -77.24 -80.50 REMARK 500 VAL A 317 -61.76 -106.40 REMARK 500 ASN A 367 103.09 89.82 REMARK 500 SER A 370 172.44 63.20 REMARK 500 ASP A 372 9.13 -176.90 REMARK 500 SER A 373 -94.51 -150.11 REMARK 500 PHE A 374 -150.32 52.41 REMARK 500 SER A 375 -1.91 -173.52 REMARK 500 SER A 377 173.93 71.56 REMARK 500 ASN A 392 68.41 38.20 REMARK 500 ARG A 400 43.30 -108.44 REMARK 500 GLN A 404 75.04 59.48 REMARK 500 LYS A 407 94.99 -165.59 REMARK 500 ARG A 438 33.86 85.39 REMARK 500 PRO A 473 40.07 -91.72 REMARK 500 ALA A 477 71.70 -108.87 REMARK 500 GLU A 489 58.13 -90.80 REMARK 500 ASP A 490 -5.30 -162.92 REMARK 500 ASN A 504 41.58 39.34 REMARK 500 HIS A 514 13.21 103.47 REMARK 500 GLN A 515 -126.15 53.88 REMARK 500 GLU A 522 -132.26 49.74 REMARK 500 ALA A 525 -10.14 -154.63 REMARK 500 THR A 554 -11.97 -156.33 REMARK 500 ALA A 556 30.50 78.91 REMARK 500 GLU A 574 14.75 91.75 REMARK 500 LYS A 615 64.51 72.96 REMARK 500 ILE A 696 -70.21 -54.26 REMARK 500 PHE A 707 76.70 109.73 REMARK 500 LEU A 758 -74.33 -98.04 REMARK 500 VAL A 797 98.67 97.32 REMARK 500 TRP A 799 -7.97 -159.41 REMARK 500 ASP A 802 83.37 170.99 REMARK 500 ASN A 838 -71.51 -99.96 REMARK 500 TRP A 851 -24.72 91.08 REMARK 500 ILE A 860 -69.68 -103.09 REMARK 500 LEU A 906 -27.97 -142.85 REMARK 500 ALA A 957 -150.36 -77.46 REMARK 500 TYR A 958 -122.65 51.01 REMARK 500 LEU A 964 57.30 75.36 REMARK 500 ASN A 969 -6.19 76.38 REMARK 500 LYS A1010 153.67 79.41 REMARK 500 SER A1016 131.37 128.51 REMARK 500 REMARK 500 THIS ENTRY HAS 68 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 PHE A 39 0.10 SIDE CHAIN REMARK 500 TYR A 41 0.07 SIDE CHAIN REMARK 500 TYR A 49 0.11 SIDE CHAIN REMARK 500 TYR A 110 0.09 SIDE CHAIN REMARK 500 TYR A 112 0.09 SIDE CHAIN REMARK 500 ARG A 170 0.09 SIDE CHAIN REMARK 500 PHE A 197 0.07 SIDE CHAIN REMARK 500 TYR A 322 0.08 SIDE CHAIN REMARK 500 TYR A 359 0.07 SIDE CHAIN REMARK 500 TYR A 440 0.10 SIDE CHAIN REMARK 500 ARG A 460 0.15 SIDE CHAIN REMARK 500 TYR A 486 0.15 SIDE CHAIN REMARK 500 ARG A 523 0.08 SIDE CHAIN REMARK 500 TYR A 618 0.07 SIDE CHAIN REMARK 500 PHE A 693 0.06 SIDE CHAIN REMARK 500 TYR A 706 0.08 SIDE CHAIN REMARK 500 ARG A 783 0.11 SIDE CHAIN REMARK 500 TYR A 849 0.08 SIDE CHAIN REMARK 500 PHE A 938 0.08 SIDE CHAIN REMARK 500 TYR A 958 0.13 SIDE CHAIN REMARK 500 TYR A1138 0.07 SIDE CHAIN REMARK 500 ARG A1179 0.13 SIDE CHAIN REMARK 500 ARG A1218 0.19 SIDE CHAIN REMARK 500 TYR A1263 0.09 SIDE CHAIN REMARK 500 PHE A1264 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 2000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 2001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-4391 RELATED DB: EMDB DBREF 6Q81 A 1 1276 UNP P21447 MDR1A_MOUSE 1 1276 SEQRES 1 A 1276 MET GLU LEU GLU GLU ASP LEU LYS GLY ARG ALA ASP LYS SEQRES 2 A 1276 ASN PHE SER LYS MET GLY LYS LYS SER LYS LYS GLU LYS SEQRES 3 A 1276 LYS GLU LYS LYS PRO ALA VAL SER VAL LEU THR MET PHE SEQRES 4 A 1276 ARG TYR ALA GLY TRP LEU ASP ARG LEU TYR MET LEU VAL SEQRES 5 A 1276 GLY THR LEU ALA ALA ILE ILE HIS GLY VAL ALA LEU PRO SEQRES 6 A 1276 LEU MET MET LEU ILE PHE GLY ASP MET THR ASP SER PHE SEQRES 7 A 1276 ALA SER VAL GLY ASN VAL SER LYS ASN SER THR ASN MET SEQRES 8 A 1276 SER GLU ALA ASP LYS ARG ALA MET PHE ALA LYS LEU GLU SEQRES 9 A 1276 GLU GLU MET THR THR TYR ALA TYR TYR TYR THR GLY ILE SEQRES 10 A 1276 GLY ALA GLY VAL LEU ILE VAL ALA TYR ILE GLN VAL SER SEQRES 11 A 1276 PHE TRP CYS LEU ALA ALA GLY ARG GLN ILE HIS LYS ILE SEQRES 12 A 1276 ARG GLN LYS PHE PHE HIS ALA ILE MET ASN GLN GLU ILE SEQRES 13 A 1276 GLY TRP PHE ASP VAL HIS ASP VAL GLY GLU LEU ASN THR SEQRES 14 A 1276 ARG LEU THR ASP ASP VAL SER LYS ILE ASN GLU GLY ILE SEQRES 15 A 1276 GLY ASP LYS ILE GLY MET PHE PHE GLN ALA MET ALA THR SEQRES 16 A 1276 PHE PHE GLY GLY PHE ILE ILE GLY PHE THR ARG GLY TRP SEQRES 17 A 1276 LYS LEU THR LEU VAL ILE LEU ALA ILE SER PRO VAL LEU SEQRES 18 A 1276 GLY LEU SER ALA GLY ILE TRP ALA LYS ILE LEU SER SER SEQRES 19 A 1276 PHE THR ASP LYS GLU LEU HIS ALA TYR ALA LYS ALA GLY SEQRES 20 A 1276 ALA VAL ALA GLU GLU VAL LEU ALA ALA ILE ARG THR VAL SEQRES 21 A 1276 ILE ALA PHE GLY GLY GLN LYS LYS GLU LEU GLU ARG TYR SEQRES 22 A 1276 ASN ASN ASN LEU GLU GLU ALA LYS ARG LEU GLY ILE LYS SEQRES 23 A 1276 LYS ALA ILE THR ALA ASN ILE SER MET GLY ALA ALA PHE SEQRES 24 A 1276 LEU LEU ILE TYR ALA SER TYR ALA LEU ALA PHE TRP TYR SEQRES 25 A 1276 GLY THR SER LEU VAL ILE SER LYS GLU TYR SER ILE GLY SEQRES 26 A 1276 GLN VAL LEU THR VAL PHE PHE SER VAL LEU ILE GLY ALA SEQRES 27 A 1276 PHE SER VAL GLY GLN ALA SER PRO ASN ILE GLU ALA PHE SEQRES 28 A 1276 ALA ASN ALA ARG GLY ALA ALA TYR GLU VAL PHE LYS ILE SEQRES 29 A 1276 ILE ASP ASN LYS PRO SER ILE ASP SER PHE SER LYS SER SEQRES 30 A 1276 GLY HIS LYS PRO ASP ASN ILE GLN GLY ASN LEU GLU PHE SEQRES 31 A 1276 LYS ASN ILE HIS PHE SER TYR PRO SER ARG LYS GLU VAL SEQRES 32 A 1276 GLN ILE LEU LYS GLY LEU ASN LEU LYS VAL LYS SER GLY SEQRES 33 A 1276 GLN THR VAL ALA LEU VAL GLY ASN SER GLY CYS GLY LYS SEQRES 34 A 1276 SER THR THR VAL GLN LEU MET GLN ARG LEU TYR ASP PRO SEQRES 35 A 1276 LEU ASP GLY MET VAL SER ILE ASP GLY GLN ASP ILE ARG SEQRES 36 A 1276 THR ILE ASN VAL ARG TYR LEU ARG GLU ILE ILE GLY VAL SEQRES 37 A 1276 VAL SER GLN GLU PRO VAL LEU PHE ALA THR THR ILE ALA SEQRES 38 A 1276 GLU ASN ILE ARG TYR GLY ARG GLU ASP VAL THR MET ASP SEQRES 39 A 1276 GLU ILE GLU LYS ALA VAL LYS GLU ALA ASN ALA TYR ASP SEQRES 40 A 1276 PHE ILE MET LYS LEU PRO HIS GLN PHE ASP THR LEU VAL SEQRES 41 A 1276 GLY GLU ARG GLY ALA GLN LEU SER GLY GLY GLN LYS GLN SEQRES 42 A 1276 ARG ILE ALA ILE ALA ARG ALA LEU VAL ARG ASN PRO LYS SEQRES 43 A 1276 ILE LEU LEU LEU ASP GLU ALA THR SER ALA LEU ASP THR SEQRES 44 A 1276 GLU SER GLU ALA VAL VAL GLN ALA ALA LEU ASP LYS ALA SEQRES 45 A 1276 ARG GLU GLY ARG THR THR ILE VAL ILE ALA HIS ARG LEU SEQRES 46 A 1276 SER THR VAL ARG ASN ALA ASP VAL ILE ALA GLY PHE ASP SEQRES 47 A 1276 GLY GLY VAL ILE VAL GLU GLN GLY ASN HIS ASP GLU LEU SEQRES 48 A 1276 MET ARG GLU LYS GLY ILE TYR PHE LYS LEU VAL MET THR SEQRES 49 A 1276 GLN THR ALA GLY ASN GLU ILE GLU LEU GLY ASN GLU ALA SEQRES 50 A 1276 CYS LYS SER LYS ASP GLU ILE ASP ASN LEU ASP MET SER SEQRES 51 A 1276 SER LYS ASP SER GLY SER SER LEU ILE ARG ARG ARG SER SEQRES 52 A 1276 THR ARG LYS SER ILE CYS GLY PRO HIS ASP GLN ASP ARG SEQRES 53 A 1276 LYS LEU SER THR LYS GLU ALA LEU ASP GLU ASP VAL PRO SEQRES 54 A 1276 PRO ALA SER PHE TRP ARG ILE LEU LYS LEU ASN SER THR SEQRES 55 A 1276 GLU TRP PRO TYR PHE VAL VAL GLY ILE PHE CYS ALA ILE SEQRES 56 A 1276 ILE ASN GLY GLY LEU GLN PRO ALA PHE SER VAL ILE PHE SEQRES 57 A 1276 SER LYS VAL VAL GLY VAL PHE THR ASN GLY GLY PRO PRO SEQRES 58 A 1276 GLU THR GLN ARG GLN ASN SER ASN LEU PHE SER LEU LEU SEQRES 59 A 1276 PHE LEU ILE LEU GLY ILE ILE SER PHE ILE THR PHE PHE SEQRES 60 A 1276 LEU GLN GLY PHE THR PHE GLY LYS ALA GLY GLU ILE LEU SEQRES 61 A 1276 THR LYS ARG LEU ARG TYR MET VAL PHE LYS SER MET LEU SEQRES 62 A 1276 ARG GLN ASP VAL SER TRP PHE ASP ASP PRO LYS ASN THR SEQRES 63 A 1276 THR GLY ALA LEU THR THR ARG LEU ALA ASN ASP ALA ALA SEQRES 64 A 1276 GLN VAL LYS GLY ALA THR GLY SER ARG LEU ALA VAL ILE SEQRES 65 A 1276 PHE GLN ASN ILE ALA ASN LEU GLY THR GLY ILE ILE ILE SEQRES 66 A 1276 SER LEU ILE TYR GLY TRP GLN LEU THR LEU LEU LEU LEU SEQRES 67 A 1276 ALA ILE VAL PRO ILE ILE ALA ILE ALA GLY VAL VAL GLU SEQRES 68 A 1276 MET LYS MET LEU SER GLY GLN ALA LEU LYS ASP LYS LYS SEQRES 69 A 1276 GLU LEU GLU GLY SER GLY LYS ILE ALA THR GLU ALA ILE SEQRES 70 A 1276 GLU ASN PHE ARG THR VAL VAL SER LEU THR ARG GLU GLN SEQRES 71 A 1276 LYS PHE GLU THR MET TYR ALA GLN SER LEU GLN ILE PRO SEQRES 72 A 1276 TYR ARG ASN ALA MET LYS LYS ALA HIS VAL PHE GLY ILE SEQRES 73 A 1276 THR PHE SER PHE THR GLN ALA MET MET TYR PHE SER TYR SEQRES 74 A 1276 ALA ALA CYS PHE ARG PHE GLY ALA TYR LEU VAL THR GLN SEQRES 75 A 1276 GLN LEU MET THR PHE GLU ASN VAL LEU LEU VAL PHE SER SEQRES 76 A 1276 ALA ILE VAL PHE GLY ALA MET ALA VAL GLY GLN VAL SER SEQRES 77 A 1276 SER PHE ALA PRO ASP TYR ALA LYS ALA THR VAL SER ALA SEQRES 78 A 1276 SER HIS ILE ILE ARG ILE ILE GLU LYS THR PRO GLU ILE SEQRES 79 A 1276 ASP SER TYR SER THR GLN GLY LEU LYS PRO ASN MET LEU SEQRES 80 A 1276 GLU GLY ASN VAL GLN PHE SER GLY VAL VAL PHE ASN TYR SEQRES 81 A 1276 PRO THR ARG PRO SER ILE PRO VAL LEU GLN GLY LEU SER SEQRES 82 A 1276 LEU GLU VAL LYS LYS GLY GLN THR LEU ALA LEU VAL GLY SEQRES 83 A 1276 SER SER GLY CYS GLY LYS SER THR VAL VAL GLN LEU LEU SEQRES 84 A 1276 GLU ARG PHE TYR ASP PRO MET ALA GLY SER VAL PHE LEU SEQRES 85 A 1276 ASP GLY LYS GLU ILE LYS GLN LEU ASN VAL GLN TRP LEU SEQRES 86 A 1276 ARG ALA GLN LEU GLY ILE VAL SER GLN GLU PRO ILE LEU SEQRES 87 A 1276 PHE ASP CYS SER ILE ALA GLU ASN ILE ALA TYR GLY ASP SEQRES 88 A 1276 ASN SER ARG VAL VAL SER TYR GLU GLU ILE VAL ARG ALA SEQRES 89 A 1276 ALA LYS GLU ALA ASN ILE HIS GLN PHE ILE ASP SER LEU SEQRES 90 A 1276 PRO ASP LYS TYR ASN THR ARG VAL GLY ASP LYS GLY THR SEQRES 91 A 1276 GLN LEU SER GLY GLY GLN LYS GLN ARG ILE ALA ILE ALA SEQRES 92 A 1276 ARG ALA LEU VAL ARG GLN PRO HIS ILE LEU LEU LEU ASP SEQRES 93 A 1276 GLU ALA THR SER ALA LEU ASP THR GLU SER GLU LYS VAL SEQRES 94 A 1276 VAL GLN GLU ALA LEU ASP LYS ALA ARG GLU GLY ARG THR SEQRES 95 A 1276 CYS ILE VAL ILE ALA HIS ARG LEU SER THR ILE GLN ASN SEQRES 96 A 1276 ALA ASP LEU ILE VAL VAL ILE GLN ASN GLY LYS VAL LYS SEQRES 97 A 1276 GLU HIS GLY THR HIS GLN GLN LEU LEU ALA GLN LYS GLY SEQRES 98 A 1276 ILE TYR PHE SER MET VAL SER VAL GLN ALA GLY ALA LYS SEQRES 99 A 1276 ARG SER HET ADP A2000 27 HET ADP A2001 27 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 2 ADP 2(C10 H15 N5 O10 P2) HELIX 1 AA1 GLY A 43 THR A 89 1 47 HELIX 2 AA2 ARG A 97 ASN A 153 1 57 HELIX 3 AA3 ILE A 156 VAL A 161 1 6 HELIX 4 AA4 GLU A 166 ILE A 182 1 17 HELIX 5 AA5 GLY A 183 GLY A 207 1 25 HELIX 6 AA6 TRP A 208 ALA A 256 1 49 HELIX 7 AA7 ALA A 256 GLY A 264 1 9 HELIX 8 AA8 GLY A 265 SER A 319 1 55 HELIX 9 AA9 GLY A 325 GLN A 343 1 19 HELIX 10 AB1 GLN A 343 ASP A 366 1 24 HELIX 11 AB2 GLY A 428 MET A 436 1 9 HELIX 12 AB3 ASN A 458 ILE A 465 1 8 HELIX 13 AB4 THR A 479 TYR A 486 1 8 HELIX 14 AB5 THR A 492 ALA A 503 1 12 HELIX 15 AB6 ASP A 507 LEU A 512 1 6 HELIX 16 AB7 HIS A 514 THR A 518 5 5 HELIX 17 AB8 SER A 528 ASN A 544 1 17 HELIX 18 AB9 ASP A 558 ARG A 573 1 16 HELIX 19 AC1 ASN A 607 LYS A 615 1 9 HELIX 20 AC2 GLY A 616 GLN A 625 1 10 HELIX 21 AC3 TRP A 694 GLU A 703 1 10 HELIX 22 AC4 VAL A 708 ASN A 737 1 30 HELIX 23 AC5 GLU A 742 ARG A 794 1 53 HELIX 24 AC6 THR A 806 ILE A 848 1 43 HELIX 25 AC7 TRP A 851 LEU A 858 1 8 HELIX 26 AC8 ILE A 860 ASN A 899 1 40 HELIX 27 AC9 PHE A 900 VAL A 903 5 4 HELIX 28 AD1 LEU A 906 ALA A 957 1 52 HELIX 29 AD2 ALA A 957 GLN A 963 1 7 HELIX 30 AD3 VAL A 970 LYS A 1010 1 41 HELIX 31 AD4 GLY A 1071 ARG A 1081 1 11 HELIX 32 AD5 ASN A 1101 ARG A 1106 1 6 HELIX 33 AD6 SER A 1122 ALA A 1128 1 7 HELIX 34 AD7 SER A 1137 ALA A 1148 1 12 HELIX 35 AD8 ILE A 1150 SER A 1156 1 7 HELIX 36 AD9 ASP A 1159 THR A 1163 5 5 HELIX 37 AE1 SER A 1173 ARG A 1188 1 16 HELIX 38 AE2 ASP A 1203 ARG A 1218 1 16 HELIX 39 AE3 THR A 1252 GLN A 1259 1 8 HELIX 40 AE4 GLY A 1261 ALA A 1271 1 11 SHEET 1 AA1 3 LEU A 406 LYS A 407 0 SHEET 2 AA1 3 LEU A 388 PHE A 395 -1 N PHE A 395 O LEU A 406 SHEET 3 AA1 3 ASN A 410 VAL A 413 -1 O LEU A 411 N PHE A 390 SHEET 1 AA2 4 LEU A 406 LYS A 407 0 SHEET 2 AA2 4 LEU A 388 PHE A 395 -1 N PHE A 395 O LEU A 406 SHEET 3 AA2 4 ASP A 444 ILE A 449 -1 O MET A 446 N LYS A 391 SHEET 4 AA2 4 GLN A 452 ASP A 453 -1 O GLN A 452 N ILE A 449 SHEET 1 AA3 6 ILE A 466 VAL A 469 0 SHEET 2 AA3 6 ILE A 547 LEU A 550 1 O LEU A 549 N VAL A 469 SHEET 3 AA3 6 THR A 577 ILE A 581 1 O ILE A 579 N LEU A 550 SHEET 4 AA3 6 THR A 418 VAL A 422 1 N VAL A 419 O VAL A 580 SHEET 5 AA3 6 VAL A 593 PHE A 597 1 O VAL A 593 N ALA A 420 SHEET 6 AA3 6 ILE A 602 GLY A 606 -1 O GLY A 606 N ILE A 594 SHEET 1 AA4 3 LEU A1049 VAL A1056 0 SHEET 2 AA4 3 VAL A1031 PHE A1038 -1 N VAL A1036 O LEU A1052 SHEET 3 AA4 3 ALA A1087 PHE A1091 -1 O PHE A1091 N GLN A1032 SHEET 1 AA5 3 THR A1061 ALA A1063 0 SHEET 2 AA5 3 THR A1222 VAL A1225 1 O CYS A1223 N LEU A1062 SHEET 3 AA5 3 ILE A1192 LEU A1195 1 N LEU A1195 O ILE A1224 SHEET 1 AA6 2 ILE A1239 GLN A1243 0 SHEET 2 AA6 2 LYS A1246 GLY A1251 -1 O LYS A1246 N GLN A1243 SITE 1 AC1 9 TYR A 397 GLU A 402 ASN A 424 SER A 425 SITE 2 AC1 9 GLY A 426 CYS A 427 GLY A 428 LYS A 429 SITE 3 AC1 9 SER A 430 SITE 1 AC2 10 ARG A 258 ASP A 801 TYR A1040 SER A1068 SITE 2 AC2 10 GLY A1069 CYS A1070 GLY A1071 LYS A1072 SITE 3 AC2 10 SER A1073 THR A1074 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000