HEADER LIGASE 14-DEC-18 6Q8A TITLE NEISSERIA GONORRHOEAE LEUCYL-TRNA SYNTHETASE IN COMPLEX WITH 5'-O-(N- TITLE 2 (L-LEUCYL)-SULFAMOYL)CYTIDINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUCINE--TRNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LEUCYL-TRNA SYNTHETASE; COMPND 5 SYNONYM: LEUCYL-TRNA SYNTHETASE,LEURS; COMPND 6 EC: 6.1.1.4; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA GONORRHOEAE (STRAIN NCCP11945); SOURCE 3 ORGANISM_TAXID: 521006; SOURCE 4 STRAIN: NCCP11945; SOURCE 5 ATCC: 49226; SOURCE 6 GENE: LEUS, NGK_0009; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: ROSETTA 2 PLYSS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PETRUK KEYWDS PROTEIN-INHIBITOR COMPLEX, ROSSMANN FOLD, TRNA SYNTHETASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR L.PANG,S.DE GRAEF,S.V.STRELKOV,S.D.WEEKS REVDAT 4 24-JAN-24 6Q8A 1 LINK REVDAT 3 01-MAY-19 6Q8A 1 REMARK REVDAT 2 24-APR-19 6Q8A 1 JRNL REVDAT 1 17-APR-19 6Q8A 0 JRNL AUTH M.NAUTIYAL,S.DE GRAEF,L.PANG,B.GADAKH,S.V.STRELKOV, JRNL AUTH 2 S.D.WEEKS,A.VAN AERSCHOT JRNL TITL COMPARATIVE ANALYSIS OF PYRIMIDINE SUBSTITUTED JRNL TITL 2 AMINOACYL-SULFAMOYL NUCLEOSIDES AS POTENTIAL INHIBITORS JRNL TITL 3 TARGETING CLASS I AMINOACYL-TRNA SYNTHETASES. JRNL REF EUR.J.MED.CHEM. V. 173 154 2019 JRNL REFN ISSN 0223-5234 JRNL PMID 30995568 JRNL DOI 10.1016/J.EJMECH.2019.04.003 REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 112.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 52071 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.980 REMARK 3 FREE R VALUE TEST SET COUNT : 2075 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1112.8756 - 5.2036 0.99 3647 145 0.1894 0.2085 REMARK 3 2 5.2036 - 4.1301 0.98 3422 144 0.1700 0.2038 REMARK 3 3 4.1301 - 3.6080 1.00 3467 144 0.1812 0.2175 REMARK 3 4 3.6080 - 3.2781 1.00 3349 176 0.1993 0.2590 REMARK 3 5 3.2781 - 3.0431 1.00 3439 138 0.2139 0.2610 REMARK 3 6 3.0431 - 2.8637 0.98 3380 140 0.2237 0.2781 REMARK 3 7 2.8637 - 2.7203 1.00 3343 137 0.2191 0.2798 REMARK 3 8 2.7203 - 2.6019 1.00 3399 141 0.2166 0.3056 REMARK 3 9 2.6019 - 2.5017 1.00 3389 154 0.2163 0.2866 REMARK 3 10 2.5017 - 2.4153 1.00 3373 157 0.2117 0.2614 REMARK 3 11 2.4153 - 2.3398 0.99 3287 136 0.2169 0.2875 REMARK 3 12 2.3398 - 2.2729 0.96 3260 134 0.2209 0.3090 REMARK 3 13 2.2729 - 2.2131 0.94 3162 122 0.2379 0.2841 REMARK 3 14 2.2131 - 2.1591 0.91 3058 116 0.2471 0.3403 REMARK 3 15 2.1591 - 2.1100 0.88 3021 91 0.2468 0.2941 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3702 -6.7541 -34.7930 REMARK 3 T TENSOR REMARK 3 T11: 0.2886 T22: 0.3146 REMARK 3 T33: 0.3333 T12: 0.0349 REMARK 3 T13: -0.0272 T23: -0.0205 REMARK 3 L TENSOR REMARK 3 L11: 1.3529 L22: 1.2433 REMARK 3 L33: 0.8308 L12: 0.9275 REMARK 3 L13: 0.9699 L23: 0.9679 REMARK 3 S TENSOR REMARK 3 S11: 0.1174 S12: 0.0852 S13: -0.2096 REMARK 3 S21: 0.0729 S22: -0.0373 S23: -0.0710 REMARK 3 S31: 0.2279 S32: 0.0755 S33: -0.0729 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 160 THROUGH 256 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.3268 23.1777 -21.1745 REMARK 3 T TENSOR REMARK 3 T11: 0.2807 T22: 0.3037 REMARK 3 T33: 0.3830 T12: -0.0472 REMARK 3 T13: -0.0331 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 0.3609 L22: 0.5549 REMARK 3 L33: 1.8480 L12: -0.2456 REMARK 3 L13: -0.2486 L23: 0.2877 REMARK 3 S TENSOR REMARK 3 S11: 0.0858 S12: -0.0637 S13: 0.0792 REMARK 3 S21: 0.0177 S22: -0.1297 S23: 0.0789 REMARK 3 S31: -0.2053 S32: 0.0440 S33: 0.0204 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 257 THROUGH 489 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8034 28.1330 -17.7804 REMARK 3 T TENSOR REMARK 3 T11: 0.3691 T22: 0.3123 REMARK 3 T33: 0.3448 T12: -0.0429 REMARK 3 T13: -0.0187 T23: 0.0241 REMARK 3 L TENSOR REMARK 3 L11: 0.7680 L22: 1.1477 REMARK 3 L33: 0.7616 L12: -0.6980 REMARK 3 L13: -0.1915 L23: 0.2023 REMARK 3 S TENSOR REMARK 3 S11: 0.1074 S12: -0.0630 S13: 0.0361 REMARK 3 S21: -0.0636 S22: 0.0203 S23: 0.0561 REMARK 3 S31: -0.2055 S32: 0.0112 S33: -0.1228 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 490 THROUGH 674 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2265 -2.1145 -29.7959 REMARK 3 T TENSOR REMARK 3 T11: 0.2927 T22: 0.2842 REMARK 3 T33: 0.2510 T12: 0.0384 REMARK 3 T13: -0.0256 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 1.6978 L22: 0.5633 REMARK 3 L33: 0.3992 L12: 0.2973 REMARK 3 L13: 0.1024 L23: 0.2154 REMARK 3 S TENSOR REMARK 3 S11: -0.0062 S12: -0.1440 S13: -0.0536 REMARK 3 S21: 0.1357 S22: -0.0153 S23: -0.0086 REMARK 3 S31: 0.1539 S32: 0.0785 S33: 0.0167 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 675 THROUGH 778 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.6155 -18.9655 -52.0991 REMARK 3 T TENSOR REMARK 3 T11: 0.1947 T22: 0.1984 REMARK 3 T33: 0.3218 T12: 0.0092 REMARK 3 T13: -0.0544 T23: -0.0503 REMARK 3 L TENSOR REMARK 3 L11: 2.5941 L22: 2.0524 REMARK 3 L33: 5.4099 L12: 0.9972 REMARK 3 L13: 1.4087 L23: 0.8150 REMARK 3 S TENSOR REMARK 3 S11: 0.1272 S12: 0.0597 S13: 0.0416 REMARK 3 S21: -0.2220 S22: -0.0237 S23: 0.1616 REMARK 3 S31: 0.1436 S32: -0.0635 S33: -0.0795 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 779 THROUGH 875 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.2452 -12.4262 -58.2546 REMARK 3 T TENSOR REMARK 3 T11: 0.4172 T22: 0.2761 REMARK 3 T33: 0.5015 T12: -0.0515 REMARK 3 T13: -0.1334 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 1.0402 L22: 1.8221 REMARK 3 L33: 1.9696 L12: -1.1952 REMARK 3 L13: 0.8813 L23: -0.2663 REMARK 3 S TENSOR REMARK 3 S11: -0.0611 S12: 0.4321 S13: -0.0311 REMARK 3 S21: -0.1508 S22: 0.0295 S23: 0.4576 REMARK 3 S31: -0.3605 S32: 0.3822 S33: -0.0678 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Q8A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1200013414. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976254 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53482 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 112.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.59600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: A MODEL GENERATED FROM 3ZJU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HOLO PROTEIN AT 10 MG/ML IN 10 MM TRIS REMARK 280 PH 7, 100 MM NACL, 2.5 MM 2-MERCAPTOETHANOL WAS MIXED WITH 0.1 M REMARK 280 BIS-TRIS PROPANE PH 8.5, 0.1 M MGCL2, 20% W/V PEG 3350 AND A REMARK 280 CRYSTAL SEED STOCK IN A 0.75:1.0:0.25 (V/V) RATIO. THE SEED REMARK 280 STOCK WAS PREPARED IN THE SAME CRYSTALLIZATION BUFFER. SUITABLE REMARK 280 CRYSTALS WERE SOAKED WITH 2 MM 5'-O-(N-(L-LEUCYL)-SULFAMOYL) REMARK 280 CYTIDINE IIN AN EQUILVALENT PRECIPITANT SOLUTION SUPPLEMENTED REMARK 280 WITH 22% V/V ETHYLENE GLYCOL., VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.57550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 112.71450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.84750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 112.71450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.57550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.84750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 60 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 PHE A 609 REMARK 465 ASP A 610 REMARK 465 ASP A 611 REMARK 465 LYS A 612 REMARK 465 GLY A 613 REMARK 465 ARG A 614 REMARK 465 PRO A 615 REMARK 465 VAL A 616 REMARK 465 SER A 617 REMARK 465 ALA A 618 REMARK 465 VAL A 619 REMARK 465 LEU A 620 REMARK 465 LYS A 621 REMARK 465 ALA A 622 REMARK 465 ASP A 623 REMARK 465 GLU A 818 REMARK 465 VAL A 819 REMARK 465 MET A 820 REMARK 465 VAL A 821 REMARK 465 GLN A 822 REMARK 465 VAL A 823 REMARK 465 ASN A 824 REMARK 465 GLY A 825 REMARK 465 LYS A 826 REMARK 465 LEU A 827 REMARK 465 ARG A 828 REMARK 465 GLY A 829 REMARK 465 LYS A 830 REMARK 465 ALA A 837 REMARK 465 SER A 838 REMARK 465 LYS A 839 REMARK 465 ALA A 840 REMARK 465 ASP A 841 REMARK 465 LEU A 842 REMARK 465 GLU A 843 REMARK 465 ALA A 844 REMARK 465 ALA A 845 REMARK 465 ALA A 846 REMARK 465 LEU A 847 REMARK 465 ALA A 848 REMARK 465 ASN A 849 REMARK 465 GLU A 850 REMARK 465 GLY A 851 REMARK 465 ALA A 852 REMARK 465 VAL A 853 REMARK 465 LYS A 854 REMARK 465 PHE A 855 REMARK 465 MET A 856 REMARK 465 GLU A 857 REMARK 465 GLY A 858 REMARK 465 LYS A 859 REMARK 465 PRO A 860 REMARK 465 ALA A 861 REMARK 465 LYS A 862 REMARK 465 LYS A 863 REMARK 465 VAL A 876 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 2 CG CD OE1 NE2 REMARK 470 LYS A 32 CG CD CE NZ REMARK 470 LYS A 92 CG CD CE NZ REMARK 470 LYS A 129 CE NZ REMARK 470 LYS A 142 CE NZ REMARK 470 GLU A 145 CD OE1 OE2 REMARK 470 GLU A 169 CG CD OE1 OE2 REMARK 470 ASP A 173 CG OD1 OD2 REMARK 470 ARG A 178 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 187 CD OE1 OE2 REMARK 470 GLU A 245 CG CD OE1 OE2 REMARK 470 ASP A 283 CG OD1 OD2 REMARK 470 LEU A 287 CD1 CD2 REMARK 470 VAL A 299 CG1 CG2 REMARK 470 ASP A 303 CG OD1 OD2 REMARK 470 MET A 304 CG SD CE REMARK 470 THR A 306 OG1 CG2 REMARK 470 VAL A 319 CG1 CG2 REMARK 470 LYS A 326 CG CD CE NZ REMARK 470 VAL A 371 CG1 CG2 REMARK 470 ARG A 380 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 383 CG CD OE1 OE2 REMARK 470 GLU A 389 CG CD OE1 OE2 REMARK 470 SER A 417 OG REMARK 470 LYS A 451 CG CD CE NZ REMARK 470 MET A 475 CG SD CE REMARK 470 LYS A 498 CD CE NZ REMARK 470 LYS A 533 CD CE NZ REMARK 470 ASP A 593 CG OD1 OD2 REMARK 470 LYS A 594 CG CD CE NZ REMARK 470 GLU A 606 CG CD OE1 OE2 REMARK 470 LEU A 607 CG CD1 CD2 REMARK 470 LEU A 625 CG CD1 CD2 REMARK 470 VAL A 627 CG1 CG2 REMARK 470 VAL A 628 CG1 CG2 REMARK 470 ILE A 629 CG1 CG2 CD1 REMARK 470 LYS A 637 CG CD CE NZ REMARK 470 LYS A 697 CD CE NZ REMARK 470 GLN A 698 CD OE1 NE2 REMARK 470 LYS A 703 CE NZ REMARK 470 LYS A 714 CE NZ REMARK 470 LYS A 756 CD CE NZ REMARK 470 GLU A 762 CD OE1 OE2 REMARK 470 VAL A 813 CG1 CG2 REMARK 470 SER A 815 OG REMARK 470 ASP A 836 CG OD1 OD2 REMARK 470 ILE A 864 CG1 CG2 CD1 REMARK 470 VAL A 866 CG1 CG2 REMARK 470 ARG A 870 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 871 CG CD1 CD2 REMARK 470 VAL A 872 CG1 CG2 REMARK 470 ASN A 873 CG OD1 ND2 REMARK 470 ILE A 874 CG1 CG2 CD1 REMARK 470 VAL A 875 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 437 56.57 -91.30 REMARK 500 MET A 475 59.60 -157.75 REMARK 500 ASP A 505 125.87 -38.70 REMARK 500 SER A 519 71.07 -157.80 REMARK 500 ILE A 549 -72.00 -109.72 REMARK 500 ALA A 835 18.84 -69.47 REMARK 500 PRO A 868 98.33 -69.14 REMARK 500 ARG A 870 -43.53 -167.65 REMARK 500 LEU A 871 -168.37 -168.12 REMARK 500 VAL A 872 71.11 -172.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 902 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 449 SG REMARK 620 2 CYS A 452 SG 110.6 REMARK 620 3 CYS A 490 SG 108.7 110.4 REMARK 620 4 CYS A 493 SG 106.2 107.0 113.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 903 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1004 O REMARK 620 2 HOH A1213 O 160.0 REMARK 620 3 HOH A1228 O 101.0 79.7 REMARK 620 4 HOH A1266 O 96.8 65.9 116.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HQ5 A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 903 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6I5Y RELATED DB: PDB REMARK 900 RELATED ID: 6HB7 RELATED DB: PDB REMARK 900 RELATED ID: 6HB5 RELATED DB: PDB REMARK 900 RELATED ID: 6HB6 RELATED DB: PDB DBREF 6Q8A A 1 876 UNP B4RNT1 SYL_NEIG2 1 876 SEQADV 6Q8A GLY A 0 UNP B4RNT1 EXPRESSION TAG SEQADV 6Q8A ASN A 454 UNP B4RNT1 ASP 454 ENGINEERED MUTATION SEQADV 6Q8A ILE A 508 UNP B4RNT1 MET 508 CONFLICT SEQRES 1 A 877 GLY MET GLN GLU HIS TYR GLN PRO ALA ALA ILE GLU PRO SEQRES 2 A 877 ALA ALA GLN LYS LYS TRP ASP ASP ALA ARG ILE SER ASN SEQRES 3 A 877 VAL SER GLU ASP ALA SER LYS PRO LYS TYR TYR CYS LEU SEQRES 4 A 877 SER MET PHE PRO TYR PRO SER GLY LYS LEU HIS MET GLY SEQRES 5 A 877 HIS VAL ARG ASN TYR THR ILE GLY ASP VAL LEU SER ARG SEQRES 6 A 877 PHE LYS LEU LEU ASN GLY PHE ASN VAL MET GLN PRO MET SEQRES 7 A 877 GLY TRP ASP ALA PHE GLY MET PRO ALA GLU ASN ALA ALA SEQRES 8 A 877 MET LYS ASN ASN VAL ALA PRO ALA ALA TRP THR TYR ASP SEQRES 9 A 877 ASN ILE GLU TYR MET LYS THR GLN LEU LYS SER LEU GLY SEQRES 10 A 877 PHE ALA VAL ASP TRP GLU ARG GLU VAL ALA THR CYS LYS SEQRES 11 A 877 PRO GLU TYR TYR ARG TRP GLU GLN TRP LEU PHE THR LYS SEQRES 12 A 877 LEU PHE GLU LYS GLY ILE VAL TYR ARG LYS ASN GLY THR SEQRES 13 A 877 VAL ASN TRP ASP PRO VAL ASP GLN THR VAL LEU ALA ASN SEQRES 14 A 877 GLU GLN VAL ILE ASP GLY ARG GLY TRP ARG SER GLY ALA SEQRES 15 A 877 LEU ILE GLU LYS ARG GLU ILE PRO MET TYR TYR PHE LYS SEQRES 16 A 877 ILE THR ASP TYR ALA GLU GLU LEU LEU ASN ASP LEU ASP SEQRES 17 A 877 LYS LEU GLU HIS TRP PRO GLU GLN VAL LYS THR MET GLN SEQRES 18 A 877 ARG ASN TRP ILE GLY LYS SER ARG GLY MET THR VAL ARG SEQRES 19 A 877 PHE ALA VAL SER ASP ASP SER LYS GLN GLY LEU GLU GLY SEQRES 20 A 877 ASP TYR ALA LYS PHE LEU GLN VAL TYR THR THR ARG PRO SEQRES 21 A 877 ASP THR LEU MET GLY ALA THR TYR VAL ALA VAL ALA ALA SEQRES 22 A 877 GLU HIS PRO LEU ALA THR ALA ALA ALA ALA ASP LYS PRO SEQRES 23 A 877 GLU LEU GLN ALA PHE ILE ALA GLU CYS LYS ALA GLY SER SEQRES 24 A 877 VAL ALA GLU ALA ASP MET ALA THR MET GLU LYS LYS GLY SEQRES 25 A 877 VAL PRO THR GLY ARG TYR VAL VAL ASN PRO LEU ASN GLY SEQRES 26 A 877 ASP LYS LEU GLU VAL TRP ILE ALA ASN TYR VAL LEU TRP SEQRES 27 A 877 GLY TYR GLY ASP GLY ALA VAL MET ALA VAL PRO ALA HIS SEQRES 28 A 877 ASP GLU ARG ASP PHE GLU PHE ALA ALA LYS TYR ASN LEU SEQRES 29 A 877 PRO LYS LYS GLN VAL ILE ALA VAL GLY ASP ASN ALA PHE SEQRES 30 A 877 ASP ALA ASN ARG TRP GLN GLU TRP TYR GLY ASP LYS GLU SEQRES 31 A 877 ASN GLY VAL LEU VAL ASN SER GLY ASP LEU ASP GLY LEU SEQRES 32 A 877 ASP PHE GLN THR ALA PHE ASP ALA VAL ALA ALA LYS LEU SEQRES 33 A 877 GLN SER GLN GLY ALA GLY GLU PRO LYS THR GLN TYR ARG SEQRES 34 A 877 LEU ARG ASP TRP GLY ILE SER ARG GLN ARG TYR TRP GLY SEQRES 35 A 877 CYS PRO ILE PRO ILE VAL HIS CYS GLU LYS CYS GLY ASN SEQRES 36 A 877 VAL PRO VAL PRO ALA ASP GLN LEU PRO VAL VAL LEU PRO SEQRES 37 A 877 GLU ASN VAL VAL PRO ASP GLY MET GLY SER PRO LEU ALA SEQRES 38 A 877 LYS MET PRO GLU PHE TYR GLU THR SER CYS PRO CYS CYS SEQRES 39 A 877 GLY GLY ALA ALA LYS ARG GLU THR ASP THR MET ASP THR SEQRES 40 A 877 PHE ILE GLU SER SER TRP TYR PHE PHE ARG TYR MET SER SEQRES 41 A 877 PRO LYS PHE SER ASP GLY MET VAL SER ALA GLU SER ALA SEQRES 42 A 877 LYS TYR TRP GLY ALA VAL ASP GLN TYR ILE GLY GLY ILE SEQRES 43 A 877 GLU HIS ALA ILE LEU HIS LEU LEU TYR ALA ARG PHE PHE SEQRES 44 A 877 THR LYS LEU MET ARG ASP GLU GLY LEU VAL ASN VAL ASP SEQRES 45 A 877 GLU PRO PHE GLU ARG LEU LEU THR GLN GLY MET VAL VAL SEQRES 46 A 877 CYS GLU THR TYR TYR ARG GLU ASN ASP LYS GLY GLY LYS SEQRES 47 A 877 ASP TRP ILE ASN PRO ALA ASP VAL GLU LEU THR PHE ASP SEQRES 48 A 877 ASP LYS GLY ARG PRO VAL SER ALA VAL LEU LYS ALA ASP SEQRES 49 A 877 GLY LEU PRO VAL VAL ILE SER GLY THR GLU LYS MET SER SEQRES 50 A 877 LYS SER LYS ASN ASN GLY VAL ASP PRO GLN GLU LEU ILE SEQRES 51 A 877 ASN ALA TYR GLY ALA ASP THR ALA ARG LEU PHE MET MET SEQRES 52 A 877 PHE ALA ALA PRO PRO GLU GLN SER LEU GLU TRP SER ASP SEQRES 53 A 877 SER GLY VAL GLU GLY ALA HIS ARG PHE LEU ARG ARG LEU SEQRES 54 A 877 TRP ARG THR VAL TYR GLU TYR LEU LYS GLN GLY GLY ALA SEQRES 55 A 877 VAL LYS ALA PHE ALA GLY ASN GLN ASP GLY LEU SER LYS SEQRES 56 A 877 GLU LEU LYS ASP LEU ARG HIS LYS LEU HIS SER THR THR SEQRES 57 A 877 ALA LYS VAL SER ASP ASP TYR GLY ARG ARG GLN GLN PHE SEQRES 58 A 877 ASN THR ALA ILE ALA ALA VAL MET GLU LEU LEU ASN GLN SEQRES 59 A 877 TYR ASP LYS THR ASP THR GLY SER GLU GLN GLY ARG ALA SEQRES 60 A 877 VAL ALA GLN GLU VAL LEU GLU ALA ALA VAL ARG LEU LEU SEQRES 61 A 877 TRP PRO ILE VAL PRO HIS ILE CYS GLU THR LEU TRP SER SEQRES 62 A 877 GLU LEU ASN GLY ALA LYS LEU TRP GLU ALA GLY TRP PRO SEQRES 63 A 877 THR VAL ASP GLU ALA ALA LEU VAL LYS SER GLU ILE GLU SEQRES 64 A 877 VAL MET VAL GLN VAL ASN GLY LYS LEU ARG GLY LYS ILE SEQRES 65 A 877 THR VAL ALA ALA ASP ALA SER LYS ALA ASP LEU GLU ALA SEQRES 66 A 877 ALA ALA LEU ALA ASN GLU GLY ALA VAL LYS PHE MET GLU SEQRES 67 A 877 GLY LYS PRO ALA LYS LYS ILE ILE VAL VAL PRO GLY ARG SEQRES 68 A 877 LEU VAL ASN ILE VAL VAL HET HQ5 A 901 29 HET ZN A 902 1 HET MG A 903 1 HETNAM HQ5 5'-O-(N-(L-LEUCYL)-SULFAMOYL)CYTIDINE HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION FORMUL 2 HQ5 C15 H25 N5 O8 S FORMUL 3 ZN ZN 2+ FORMUL 4 MG MG 2+ FORMUL 5 HOH *269(H2 O) HELIX 1 AA1 GLN A 6 ARG A 22 1 17 HELIX 2 AA2 HIS A 49 ASN A 69 1 21 HELIX 3 AA3 GLY A 83 ASN A 94 1 12 HELIX 4 AA4 ALA A 96 LEU A 115 1 20 HELIX 5 AA5 ASP A 120 GLU A 124 5 5 HELIX 6 AA6 LYS A 129 LYS A 146 1 18 HELIX 7 AA7 ALA A 167 GLU A 169 5 3 HELIX 8 AA8 ILE A 195 ASP A 197 5 3 HELIX 9 AA9 TYR A 198 ASP A 205 1 8 HELIX 10 AB1 LEU A 206 LEU A 209 5 4 HELIX 11 AB2 PRO A 213 GLY A 225 1 13 HELIX 12 AB3 ASP A 238 LYS A 241 5 4 HELIX 13 AB4 GLU A 245 ALA A 249 5 5 HELIX 14 AB5 ARG A 258 ALA A 265 5 8 HELIX 15 AB6 HIS A 274 ALA A 282 1 9 HELIX 16 AB7 LYS A 284 ALA A 296 1 13 HELIX 17 AB8 ALA A 300 MET A 307 5 8 HELIX 18 AB9 ASP A 351 ASN A 362 1 12 HELIX 19 AC1 GLN A 382 ASP A 387 5 6 HELIX 20 AC2 SER A 396 ASP A 400 5 5 HELIX 21 AC3 ASP A 403 GLN A 418 1 16 HELIX 22 AC4 PRO A 458 LEU A 462 5 5 HELIX 23 AC5 SER A 477 LYS A 481 5 5 HELIX 24 AC6 MET A 482 TYR A 486 1 5 HELIX 25 AC7 THR A 506 SER A 511 1 6 HELIX 26 AC8 TRP A 512 TYR A 517 1 6 HELIX 27 AC9 SER A 528 GLY A 536 1 9 HELIX 28 AD1 GLY A 544 ALA A 548 5 5 HELIX 29 AD2 ILE A 549 GLU A 565 1 17 HELIX 30 AD3 ASN A 601 VAL A 605 5 5 HELIX 31 AD4 ASP A 644 GLY A 653 1 10 HELIX 32 AD5 GLY A 653 ALA A 665 1 13 HELIX 33 AD6 SER A 674 GLY A 700 1 27 HELIX 34 AD7 SER A 713 ARG A 736 1 24 HELIX 35 AD8 GLN A 739 LYS A 756 1 18 HELIX 36 AD9 SER A 761 TRP A 780 1 20 HELIX 37 AE1 VAL A 783 ASN A 795 1 13 HELIX 38 AE2 LYS A 798 GLY A 803 1 6 HELIX 39 AE3 ASP A 808 VAL A 813 5 6 SHEET 1 AA1 4 ASN A 72 MET A 74 0 SHEET 2 AA1 4 LYS A 34 SER A 39 1 N TYR A 35 O MET A 74 SHEET 3 AA1 4 VAL A 538 ILE A 542 1 O GLN A 540 N LEU A 38 SHEET 4 AA1 4 PHE A 574 LEU A 578 1 O LEU A 578 N TYR A 541 SHEET 1 AA2 4 THR A 164 LEU A 166 0 SHEET 2 AA2 4 VAL A 149 ASP A 159 -1 N ASN A 157 O LEU A 166 SHEET 3 AA2 4 GLU A 184 PHE A 193 -1 O GLU A 184 N TRP A 158 SHEET 4 AA2 4 TRP A 432 GLY A 433 -1 O TRP A 432 N PHE A 193 SHEET 1 AA3 2 VAL A 171 ILE A 172 0 SHEET 2 AA3 2 ARG A 175 GLY A 176 -1 O ARG A 175 N ILE A 172 SHEET 1 AA4 6 PHE A 251 THR A 256 0 SHEET 2 AA4 6 LYS A 226 VAL A 236 -1 N PHE A 234 O LEU A 252 SHEET 3 AA4 6 GLY A 311 VAL A 319 -1 O VAL A 319 N ALA A 235 SHEET 4 AA4 6 LYS A 326 ALA A 332 -1 O LEU A 327 N VAL A 318 SHEET 5 AA4 6 TYR A 267 VAL A 270 1 N VAL A 270 O TRP A 330 SHEET 6 AA4 6 ALA A 343 ALA A 346 -1 O VAL A 344 N ALA A 269 SHEET 1 AA5 3 PHE A 251 THR A 256 0 SHEET 2 AA5 3 LYS A 226 VAL A 236 -1 N PHE A 234 O LEU A 252 SHEET 3 AA5 3 GLY A 421 TYR A 427 -1 O GLU A 422 N THR A 231 SHEET 1 AA6 2 ILE A 369 ALA A 370 0 SHEET 2 AA6 2 VAL A 392 LEU A 393 -1 O VAL A 392 N ALA A 370 SHEET 1 AA7 2 SER A 435 ARG A 436 0 SHEET 2 AA7 2 THR A 503 MET A 504 -1 O THR A 503 N ARG A 436 SHEET 1 AA8 4 GLY A 453 PRO A 456 0 SHEET 2 AA8 4 ILE A 446 CYS A 449 -1 N VAL A 447 O VAL A 455 SHEET 3 AA8 4 ALA A 496 ARG A 499 -1 O LYS A 498 N HIS A 448 SHEET 4 AA8 4 GLU A 487 SER A 489 -1 N THR A 488 O ALA A 497 SHEET 1 AA9 3 LYS A 597 ILE A 600 0 SHEET 2 AA9 3 VAL A 583 GLU A 591 -1 N TYR A 588 O ILE A 600 SHEET 3 AA9 3 VAL A 628 LYS A 634 -1 O SER A 630 N THR A 587 SHEET 1 AB1 3 LYS A 597 ILE A 600 0 SHEET 2 AB1 3 VAL A 583 GLU A 591 -1 N TYR A 588 O ILE A 600 SHEET 3 AB1 3 LEU A 671 GLU A 672 1 O LEU A 671 N VAL A 584 LINK SG CYS A 449 ZN ZN A 902 1555 1555 2.37 LINK SG CYS A 452 ZN ZN A 902 1555 1555 2.21 LINK SG CYS A 490 ZN ZN A 902 1555 1555 2.31 LINK SG CYS A 493 ZN ZN A 902 1555 1555 2.35 LINK MG MG A 903 O HOH A1004 1555 1555 2.18 LINK MG MG A 903 O HOH A1213 1555 3454 2.33 LINK MG MG A 903 O HOH A1228 1555 1555 1.87 LINK MG MG A 903 O HOH A1266 1555 3454 1.89 CISPEP 1 LEU A 462 PRO A 463 0 5.00 SITE 1 AC1 21 MET A 40 PHE A 41 PRO A 42 TYR A 43 SITE 2 AC1 21 HIS A 49 GLY A 51 HIS A 52 ASN A 55 SITE 3 AC1 21 TYR A 56 ASP A 80 SER A 510 TYR A 513 SITE 4 AC1 21 TYR A 541 GLY A 543 GLY A 544 GLU A 546 SITE 5 AC1 21 HIS A 547 HIS A 551 GLN A 580 HOH A1075 SITE 6 AC1 21 HOH A1122 SITE 1 AC2 4 CYS A 449 CYS A 452 CYS A 490 CYS A 493 SITE 1 AC3 4 HOH A1004 HOH A1213 HOH A1228 HOH A1266 CRYST1 49.151 81.695 225.429 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020345 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012241 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004436 0.00000