HEADER ANTIBIOTIC 14-DEC-18 6Q8H TITLE STRUCTURE OF FUCOSYLATED D-ANTIMICROBIAL PEPTIDE SB10 IN COMPLEX WITH TITLE 2 THE FUCOSE-BINDING LECTIN PA-IIL AT 1.707 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: FUCOSE-BINDING LECTIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FUCOSE-BINDING LECTIN II (PA-IIL),FUCOSE-BINDING LECTIN PA- COMPND 5 IIL; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: FUCOSE-BINDING LECTIN PA-IIL LECB; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: SB10; COMPND 10 CHAIN: B, C; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: FUCOSYLATED D-ANTIMICROBIAL PEPTIDE SB10. FULL COMPND 13 SEQUENCE: (FUD)(DLE)(DLE)(DLY)(DAL)(DLE)(DLY)(DLY)(DLE)(DAL)(DLY) COMPND 14 (DLY)(DTY)(DLY) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: LECB, C0043_24310, C0044_25260, C0046_23510, CAZ10_21840, SOURCE 5 CW299_25270, DI492_13230, DT376_00595, SOURCE 6 PAERUG_E15_LONDON_28_01_14_00983, PAMH19_1713, RW109_RW109_02453; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630 KEYWDS ANTIMICROBIAL, LECTIN, COMPLEX, ANTIBIOTIC EXPDTA X-RAY DIFFRACTION AUTHOR S.BAERISWYL,A.STOCKER,J.L.REYMOND REVDAT 5 31-JAN-24 6Q8H 1 REMARK REVDAT 4 07-DEC-22 6Q8H 1 COMPND SOURCE REMARK DBREF REVDAT 4 2 1 SEQRES HET HETNAM FORMUL REVDAT 4 3 1 HELIX LINK ATOM REVDAT 3 29-JUL-20 6Q8H 1 REMARK LINK SITE REVDAT 2 01-MAY-19 6Q8H 1 JRNL REVDAT 1 20-MAR-19 6Q8H 0 JRNL AUTH S.BAERISWYL,B.H.GAN,T.N.SIRIWARDENA,R.VISINI,M.ROBADEY, JRNL AUTH 2 S.JAVOR,A.STOCKER,T.DARBRE,J.L.REYMOND JRNL TITL X-RAY CRYSTAL STRUCTURES OF SHORT ANTIMICROBIAL PEPTIDES AS JRNL TITL 2 PSEUDOMONAS AERUGINOSA LECTIN B COMPLEXES. JRNL REF ACS CHEM.BIOL. V. 14 758 2019 JRNL REFN ESSN 1554-8937 JRNL PMID 30830745 JRNL DOI 10.1021/ACSCHEMBIO.9B00047 REMARK 2 REMARK 2 RESOLUTION. 1.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 27906 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2607 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.7380 - 4.5537 1.00 2623 147 0.1368 0.1557 REMARK 3 2 4.5537 - 3.6149 1.00 2631 132 0.1354 0.1806 REMARK 3 3 3.6149 - 3.1580 1.00 2642 134 0.1520 0.1534 REMARK 3 4 3.1580 - 2.8693 1.00 2619 138 0.1696 0.1584 REMARK 3 5 2.8693 - 2.6637 1.00 2612 140 0.1587 0.1893 REMARK 3 6 2.6637 - 2.5067 1.00 2632 134 0.1622 0.1858 REMARK 3 7 2.5067 - 2.3811 1.00 2610 139 0.1667 0.1891 REMARK 3 8 2.3811 - 2.2775 1.00 2622 142 0.1535 0.1668 REMARK 3 9 2.2775 - 2.1898 1.00 2617 137 0.1666 0.1929 REMARK 3 10 2.1898 - 2.1143 0.99 2630 138 0.1830 0.2091 REMARK 3 11 2.1143 - 2.0481 0.99 2602 136 0.1969 0.2114 REMARK 3 12 2.0481 - 1.9896 0.99 2576 135 0.1918 0.2314 REMARK 3 13 1.9896 - 1.9372 0.99 2646 137 0.2053 0.2438 REMARK 3 14 1.9372 - 1.8900 0.99 2605 133 0.2139 0.2678 REMARK 3 15 1.8900 - 1.8470 1.00 2585 137 0.2469 0.2609 REMARK 3 16 1.8470 - 1.8077 0.98 2568 142 0.2769 0.2853 REMARK 3 17 1.8077 - 1.7715 0.99 2622 135 0.2999 0.3607 REMARK 3 18 1.7715 - 1.7381 0.98 2545 137 0.3314 0.3694 REMARK 3 19 1.7381 - 1.7071 0.96 2534 134 0.3394 0.3326 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1071 REMARK 3 ANGLE : 0.875 1457 REMARK 3 CHIRALITY : 0.067 187 REMARK 3 PLANARITY : 0.005 185 REMARK 3 DIHEDRAL : 8.125 570 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.9114 -56.9318 1.7886 REMARK 3 T TENSOR REMARK 3 T11: 0.1720 T22: 0.3931 REMARK 3 T33: 0.2496 T12: -0.0796 REMARK 3 T13: 0.0211 T23: -0.0226 REMARK 3 L TENSOR REMARK 3 L11: 1.1807 L22: 0.6905 REMARK 3 L33: 1.9485 L12: -0.0956 REMARK 3 L13: -0.4198 L23: -0.2343 REMARK 3 S TENSOR REMARK 3 S11: 0.0250 S12: 0.2809 S13: -0.0150 REMARK 3 S21: 0.0020 S22: -0.0362 S23: 0.1525 REMARK 3 S31: 0.0559 S32: -0.4123 S33: 0.0130 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7351 -52.9519 -1.5820 REMARK 3 T TENSOR REMARK 3 T11: 0.2435 T22: 0.6102 REMARK 3 T33: 0.3257 T12: -0.0140 REMARK 3 T13: 0.0414 T23: 0.0418 REMARK 3 L TENSOR REMARK 3 L11: 1.6899 L22: 0.2544 REMARK 3 L33: 4.1523 L12: 0.6550 REMARK 3 L13: -2.1378 L23: -0.7904 REMARK 3 S TENSOR REMARK 3 S11: 0.1385 S12: 0.4974 S13: 0.3396 REMARK 3 S21: -0.0186 S22: 0.1638 S23: 0.2916 REMARK 3 S31: -0.4293 S32: -1.0179 S33: -0.3125 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 35 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0622 -56.4227 -1.1171 REMARK 3 T TENSOR REMARK 3 T11: 0.1479 T22: 0.5590 REMARK 3 T33: 0.3708 T12: -0.0407 REMARK 3 T13: 0.0015 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 8.9148 L22: 4.6141 REMARK 3 L33: 4.6764 L12: 1.7439 REMARK 3 L13: -6.0296 L23: 0.4163 REMARK 3 S TENSOR REMARK 3 S11: 0.0315 S12: 0.4532 S13: 0.2466 REMARK 3 S21: -0.1938 S22: 0.2826 S23: 0.4675 REMARK 3 S31: 0.2255 S32: -1.0371 S33: -0.3276 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 43 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.1971 -57.7376 2.6456 REMARK 3 T TENSOR REMARK 3 T11: 0.1809 T22: 0.4907 REMARK 3 T33: 0.3008 T12: -0.0741 REMARK 3 T13: 0.0311 T23: -0.0131 REMARK 3 L TENSOR REMARK 3 L11: 1.0930 L22: 0.8193 REMARK 3 L33: 1.8437 L12: -0.0075 REMARK 3 L13: -0.8706 L23: 0.3221 REMARK 3 S TENSOR REMARK 3 S11: 0.0978 S12: 0.2890 S13: 0.0377 REMARK 3 S21: -0.0108 S22: -0.0654 S23: 0.1826 REMARK 3 S31: -0.0067 S32: -0.4870 S33: -0.0012 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 70 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.2202 -44.7078 8.7005 REMARK 3 T TENSOR REMARK 3 T11: 0.3835 T22: 0.6400 REMARK 3 T33: 0.5517 T12: -0.0004 REMARK 3 T13: 0.1281 T23: 0.0914 REMARK 3 L TENSOR REMARK 3 L11: 0.0001 L22: 2.7263 REMARK 3 L33: 0.1859 L12: 0.0235 REMARK 3 L13: -0.0059 L23: -0.7114 REMARK 3 S TENSOR REMARK 3 S11: 0.1555 S12: -1.1317 S13: 0.6508 REMARK 3 S21: 0.9093 S22: 0.0316 S23: 0.7978 REMARK 3 S31: -0.3234 S32: -0.8624 S33: -0.1299 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1519 -56.6439 7.0005 REMARK 3 T TENSOR REMARK 3 T11: 0.1899 T22: 0.3250 REMARK 3 T33: 0.2485 T12: -0.0769 REMARK 3 T13: 0.0313 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 1.3453 L22: 0.6294 REMARK 3 L33: 0.5920 L12: 0.5403 REMARK 3 L13: 0.2671 L23: -0.3419 REMARK 3 S TENSOR REMARK 3 S11: 0.0633 S12: 0.1620 S13: 0.0695 REMARK 3 S21: 0.1480 S22: -0.0463 S23: 0.1685 REMARK 3 S31: 0.0303 S32: -0.1960 S33: -0.0240 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Q8H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1200013382. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000040 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27907 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.707 REMARK 200 RESOLUTION RANGE LOW (A) : 45.722 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08600 REMARK 200 FOR THE DATA SET : 20.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 13.30 REMARK 200 R MERGE FOR SHELL (I) : 2.22200 REMARK 200 R SYM FOR SHELL (I) : 2.22200 REMARK 200 FOR SHELL : 0.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1OXC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% V/V TACSIMATE PH 7.0, 0.1 M HEPES REMARK 280 PH 7.0, 2% W/V POLYETHYLENE GLYCOL 3,350, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.28000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 16.64000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 33.28000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 16.64000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 33.28000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 16.64000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 33.28000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 16.64000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 409 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 525 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DLY C 4 CG CD CE NZ REMARK 470 DLY C 8 CG CD CE NZ REMARK 470 DLY C 11 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N DLE B 2 C7 ZDC B 101 1.31 REMARK 500 N DLE C 2 C7 ZDC C 101 1.40 REMARK 500 O HOH A 426 O HOH A 498 1.89 REMARK 500 O HOH A 489 O HOH A 520 2.04 REMARK 500 O HOH A 524 O HOH A 541 2.06 REMARK 500 O HOH B 219 O HOH B 224 2.09 REMARK 500 O HOH A 515 O HOH A 528 2.12 REMARK 500 O HOH B 225 O HOH B 227 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 410 O HOH A 410 9555 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 84 37.93 39.91 REMARK 500 ASN A 85 18.54 59.32 REMARK 500 GLU A 86 -41.11 -135.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ZDC B 101 REMARK 610 ZDC C 101 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 21 O REMARK 620 2 ASP A 101 OD2 155.5 REMARK 620 3 ASN A 103 OD1 86.2 74.5 REMARK 620 4 ASP A 104 OD1 80.8 112.9 88.0 REMARK 620 5 GLY A 114 O 58.1 101.4 28.1 84.8 REMARK 620 6 ZDC B 101 O2 77.0 117.5 159.1 101.3 133.3 REMARK 620 7 ZDC B 101 O3 131.2 73.1 135.0 76.9 156.5 65.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 95 OE1 REMARK 620 2 GLU A 95 OE2 54.1 REMARK 620 3 ASP A 99 OD1 80.7 85.1 REMARK 620 4 ASP A 101 OD1 130.2 78.1 82.2 REMARK 620 5 ASP A 104 OD1 132.3 119.4 145.9 80.5 REMARK 620 6 ASP A 104 OD2 81.9 85.8 162.5 110.4 51.0 REMARK 620 7 ZDC B 101 O3 140.8 149.9 75.4 76.8 72.1 118.4 REMARK 620 8 ZDC B 101 O4 86.3 139.6 97.2 142.3 79.4 80.3 66.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6Q6W RELATED DB: PDB REMARK 900 6Q6W CONTAINS THE SAME PROTEIN IN COMPLEX WITH ANOTHER CLOSE ANALOG REMARK 900 OF THE FUCOSYLATED D-ANTIMICROBIAL PEPTIDE REMARK 900 RELATED ID: 6Q6X RELATED DB: PDB REMARK 900 6Q6X CONTAINS THE SAME PROTEIN IN COMPLEX WITH ANOTHER CLOSE ANALOG REMARK 900 OF THE FUCOSYLATED D-ANTIMICROBIAL PEPTIDE REMARK 900 RELATED ID: 6Q77 RELATED DB: PDB REMARK 900 6Q77 CONTAINS THE SAME PROTEIN IN COMPLEX WITH ANOTHER CLOSE ANALOG REMARK 900 OF THE FUCOSYLATED D-ANTIMICROBIAL PEPTIDE REMARK 900 RELATED ID: 6Q79 RELATED DB: PDB REMARK 900 6Q79 CONTAINS THE SAME PROTEIN IN COMPLEX WITH ANOTHER CLOSE ANALOG REMARK 900 OF THE FUCOSYLATED D-ANTIMICROBIAL PEPTIDE REMARK 900 RELATED ID: 6Q85 RELATED DB: PDB REMARK 900 6Q85 CONTAINS THE SAME PROTEIN IN COMPLEX WITH ANOTHER CLOSE ANALOG REMARK 900 OF THE FUCOSYLATED D-ANTIMICROBIAL PEPTIDE REMARK 900 RELATED ID: 6Q86 RELATED DB: PDB REMARK 900 6Q86 CONTAINS THE SAME PROTEIN IN COMPLEX WITH ANOTHER CLOSE ANALOG REMARK 900 OF THE FUCOSYLATED D-ANTIMICROBIAL PEPTIDE REMARK 900 RELATED ID: 6Q87 RELATED DB: PDB REMARK 900 6Q87 CONTAINS THE SAME PROTEIN IN COMPLEX WITH ANOTHER CLOSE ANALOG REMARK 900 OF THE FUCOSYLATED D-ANTIMICROBIAL PEPTIDE REMARK 900 RELATED ID: 6Q8D RELATED DB: PDB REMARK 900 6Q8D CONTAINS THE SAME PROTEIN IN COMPLEX WITH ANOTHER CLOSE ANALOG REMARK 900 OF THE FUCOSYLATED D-ANTIMICROBIAL PEPTIDE REMARK 900 RELATED ID: 6Q8G RELATED DB: PDB REMARK 900 6Q8G CONTAINS THE SAME PROTEIN IN COMPLEX WITH ANOTHER CLOSE ANALOG REMARK 900 OF THE FUCOSYLATED D-ANTIMICROBIAL PEPTIDE DBREF1 6Q8H A 1 114 UNP A0A069Q9V4_PSEAI DBREF2 6Q8H A A0A069Q9V4 2 115 DBREF 6Q8H B 2 14 PDB 6Q8H 6Q8H 2 14 DBREF 6Q8H C 2 14 PDB 6Q8H 6Q8H 2 14 SEQRES 1 A 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR ARG SEQRES 2 A 114 PHE GLY VAL THR ALA PHE ALA ASN SER SER GLY THR GLN SEQRES 3 A 114 THR VAL ASN VAL LEU VAL ASN ASN GLU THR ALA ALA THR SEQRES 4 A 114 PHE SER GLY GLN SER THR ASN ASN ALA VAL ILE GLY THR SEQRES 5 A 114 GLN VAL LEU ASN SER GLY SER SER GLY LYS VAL GLN VAL SEQRES 6 A 114 GLN VAL SER VAL ASN GLY ARG PRO SER ASP LEU VAL SER SEQRES 7 A 114 ALA GLN VAL ILE LEU THR ASN GLU LEU ASN PHE ALA LEU SEQRES 8 A 114 VAL GLY SER GLU ASP GLY THR ASP ASN ASP TYR ASN ASP SEQRES 9 A 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 B 13 DLE DLE DLY DAL DLE DLY DLY DLE DAL DLY DLY DTY DLY SEQRES 1 C 13 DLE DLE DLY DAL DLE DLY DLY DLE DAL DLY DLY DTY DLY HET DLE B 2 8 HET DLE B 3 8 HET DLY B 4 9 HET DAL B 5 5 HET DLE B 6 8 HET DLY B 7 9 HET DLY B 8 9 HET DLE B 9 8 HET DAL B 10 5 HET DLY B 11 9 HET DLY B 12 9 HET DTY B 13 12 HET DLY B 14 9 HET DLE C 2 8 HET DLE C 3 8 HET DLY C 4 5 HET DAL C 5 5 HET DLE C 6 8 HET DLY C 7 9 HET DLY C 8 5 HET DLE C 9 8 HET DAL C 10 5 HET DLY C 11 5 HET DLY C 12 9 HET DTY C 13 12 HET DLY C 14 9 HET CA A 301 1 HET CA A 302 1 HET ZDC B 101 13 HET NH2 B 102 1 HET ZDC C 101 13 HET NH2 C 102 1 HETNAM DLE D-LEUCINE HETNAM DLY D-LYSINE HETNAM DAL D-ALANINE HETNAM DTY D-TYROSINE HETNAM CA CALCIUM ION HETNAM ZDC 3,7-ANHYDRO-2,8-DIDEOXY-L-GLYCERO-D-GLUCO-OCTONIC ACID HETNAM NH2 AMINO GROUP FORMUL 2 DLE 8(C6 H13 N O2) FORMUL 2 DLY 12(C6 H14 N2 O2) FORMUL 2 DAL 4(C3 H7 N O2) FORMUL 2 DTY 2(C9 H11 N O3) FORMUL 4 CA 2(CA 2+) FORMUL 6 ZDC 2(C8 H14 O6) FORMUL 7 NH2 2(H2 N) FORMUL 10 HOH *177(H2 O) HELIX 1 AA1 DLE B 3 DLY B 14 1 12 HELIX 2 AA2 DLE C 3 DLY C 14 1 12 SHEET 1 AA1 4 VAL A 5 THR A 7 0 SHEET 2 AA1 4 LYS A 62 VAL A 69 -1 O VAL A 63 N PHE A 6 SHEET 3 AA1 4 ARG A 13 VAL A 32 -1 N LEU A 31 O GLN A 64 SHEET 4 AA1 4 ARG A 72 PRO A 73 0 SHEET 1 AA2 6 GLU A 35 ASN A 56 0 SHEET 2 AA2 6 ARG A 13 VAL A 32 -1 N VAL A 30 O ALA A 37 SHEET 3 AA2 6 LYS A 62 VAL A 69 -1 O GLN A 64 N LEU A 31 SHEET 4 AA2 6 ALA A 105 TRP A 111 0 SHEET 5 AA2 6 LEU A 87 GLU A 95 -1 N ASN A 88 O TRP A 111 SHEET 6 AA2 6 ASP A 75 LEU A 83 -1 N ALA A 79 O LEU A 91 LINK C DLE B 2 N DLE B 3 1555 1555 1.33 LINK C DLE B 3 N DLY B 4 1555 1555 1.33 LINK C DLY B 4 N DAL B 5 1555 1555 1.33 LINK C DAL B 5 N DLE B 6 1555 1555 1.33 LINK C DLE B 6 N DLY B 7 1555 1555 1.33 LINK C DLY B 7 N DLY B 8 1555 1555 1.33 LINK C DLY B 8 N DLE B 9 1555 1555 1.33 LINK C DLE B 9 N DAL B 10 1555 1555 1.33 LINK C DAL B 10 N DLY B 11 1555 1555 1.33 LINK C DLY B 11 N DLY B 12 1555 1555 1.33 LINK C DLY B 12 N DTY B 13 1555 1555 1.33 LINK C DTY B 13 N DLY B 14 1555 1555 1.33 LINK C DLY B 14 N NH2 B 102 1555 1555 1.33 LINK C DLE C 2 N DLE C 3 1555 1555 1.33 LINK C DLE C 3 N DLY C 4 1555 1555 1.33 LINK C DLY C 4 N DAL C 5 1555 1555 1.33 LINK C DAL C 5 N DLE C 6 1555 1555 1.33 LINK C DLE C 6 N DLY C 7 1555 1555 1.33 LINK C DLY C 7 N DLY C 8 1555 1555 1.33 LINK C DLY C 8 N DLE C 9 1555 1555 1.33 LINK C DLE C 9 N DAL C 10 1555 1555 1.33 LINK C DAL C 10 N DLY C 11 1555 1555 1.33 LINK C DLY C 11 N DLY C 12 1555 1555 1.33 LINK C DLY C 12 N DTY C 13 1555 1555 1.33 LINK C DTY C 13 N DLY C 14 1555 1555 1.33 LINK C DLY C 14 N NH2 C 102 1555 1555 1.33 LINK O ASN A 21 CA CA A 302 1555 1555 2.34 LINK OE1 GLU A 95 CA CA A 301 1555 1555 2.40 LINK OE2 GLU A 95 CA CA A 301 1555 1555 2.44 LINK OD1 ASP A 99 CA CA A 301 1555 1555 2.44 LINK OD1 ASP A 101 CA CA A 301 1555 1555 2.42 LINK OD2 ASP A 101 CA CA A 302 1555 1555 2.38 LINK OD1 ASN A 103 CA CA A 302 1555 1555 2.38 LINK OD1 ASP A 104 CA CA A 301 1555 1555 2.66 LINK OD2 ASP A 104 CA CA A 301 1555 1555 2.41 LINK OD1 ASP A 104 CA CA A 302 1555 1555 2.43 LINK O GLY A 114 CA CA A 302 1555 12545 2.41 LINK CA CA A 301 O3 ZDC B 101 1555 1555 2.52 LINK CA CA A 301 O4 ZDC B 101 1555 1555 2.46 LINK CA CA A 302 O2 ZDC B 101 1555 1555 2.53 LINK CA CA A 302 O3 ZDC B 101 1555 1555 2.48 CISPEP 1 TRP A 111 PRO A 112 0 -0.96 CRYST1 131.522 131.522 49.920 90.00 90.00 120.00 P 62 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007603 0.004390 0.000000 0.00000 SCALE2 0.000000 0.008780 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020032 0.00000