HEADER GENE REGULATION 18-DEC-18 6Q9F TITLE ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE (ASPH) H679A IN COMPLEX WITH MN, TITLE 2 NOG AND FACTOR X PEPTIDE FRAGMENT (39MER-4SER) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ASPARTATE BETA-HYDROXYLASE,ASP BETA-HYDROXYLASE,PEPTIDE- COMPND 5 ASPARTATE BETA-DIOXYGENASE; COMPND 6 EC: 1.14.11.16; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: COAGULATION FACTOR X; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: STUART FACTOR,STUART-PROWER FACTOR; COMPND 13 EC: 3.4.21.6; COMPND 14 ENGINEERED: YES; COMPND 15 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ASPH, BAH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-28A(+); SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS OXIDOREDUCTASE, NON-HEME DIOXYGENASE, IRON, 2-OXOGLUTARATE, 2- KEYWDS 2 OXOGLUTARATE DEPENDENT OXYGENASE, OXYGENASE, HYPOXIA, METAL-BINDING, KEYWDS 3 TRANSCRIPTION, ASPARTYL/ASPARAGINYL BETA-2 HYDROXYLASE, ASPH, EGF- KEYWDS 4 LIKE DOMAIN HYDROXYLASE, DOUBLE STRANDED BETA-HELIX, FACIAL TRIAD, KEYWDS 5 CYTOPLASM, TPR, TETRATRICOPEPTIDE REPEAT, BETA-HYDROXYLATION, KEYWDS 6 SIGNALING, DEVELOPMENT, VITAMIN C, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR R.CHOWDHURY,I.PFEFFER,C.J.SCHOFIELD REVDAT 2 24-JAN-24 6Q9F 1 LINK REVDAT 1 15-JAN-20 6Q9F 0 JRNL AUTH I.PFEFFER,R.CHOWDHURY,C.J.SCHOFIELD JRNL TITL ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE (ASPH) H679A IN JRNL TITL 2 COMPLEX WITH MN, NOG AND FACTOR X PEPTIDE FRAGMENT JRNL TITL 3 (39MER-4SER) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 70858 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 3465 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.1797 - 4.7656 1.00 2928 133 0.1829 0.1914 REMARK 3 2 4.7656 - 3.7831 1.00 2783 149 0.1466 0.1721 REMARK 3 3 3.7831 - 3.3051 1.00 2745 143 0.1676 0.1585 REMARK 3 4 3.3051 - 3.0030 1.00 2716 156 0.1864 0.2118 REMARK 3 5 3.0030 - 2.7877 1.00 2707 135 0.1811 0.2207 REMARK 3 6 2.7877 - 2.6234 1.00 2703 150 0.1814 0.1969 REMARK 3 7 2.6234 - 2.4920 1.00 2709 141 0.1757 0.2031 REMARK 3 8 2.4920 - 2.3836 1.00 2711 128 0.1769 0.1967 REMARK 3 9 2.3836 - 2.2918 1.00 2685 147 0.1787 0.2247 REMARK 3 10 2.2918 - 2.2127 1.00 2696 133 0.1824 0.1915 REMARK 3 11 2.2127 - 2.1435 1.00 2690 153 0.1829 0.1869 REMARK 3 12 2.1435 - 2.0823 1.00 2630 139 0.1837 0.1948 REMARK 3 13 2.0823 - 2.0274 1.00 2737 122 0.1908 0.2406 REMARK 3 14 2.0274 - 1.9780 1.00 2674 127 0.1949 0.2283 REMARK 3 15 1.9780 - 1.9330 1.00 2693 112 0.1913 0.2166 REMARK 3 16 1.9330 - 1.8919 1.00 2685 124 0.2073 0.2299 REMARK 3 17 1.8919 - 1.8540 1.00 2650 151 0.2077 0.2519 REMARK 3 18 1.8540 - 1.8190 1.00 2692 142 0.2170 0.2750 REMARK 3 19 1.8190 - 1.7865 1.00 2594 170 0.2204 0.2493 REMARK 3 20 1.7865 - 1.7563 1.00 2675 141 0.2409 0.2677 REMARK 3 21 1.7563 - 1.7279 1.00 2650 138 0.2473 0.2800 REMARK 3 22 1.7279 - 1.7013 1.00 2683 131 0.2481 0.2593 REMARK 3 23 1.7013 - 1.6763 1.00 2657 145 0.2581 0.2669 REMARK 3 24 1.6763 - 1.6527 1.00 2655 124 0.2845 0.3091 REMARK 3 25 1.6527 - 1.6304 0.99 2645 131 0.2978 0.3195 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 49.30 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 3893 REMARK 3 ANGLE : 1.199 5276 REMARK 3 CHIRALITY : 0.059 546 REMARK 3 PLANARITY : 0.009 698 REMARK 3 DIHEDRAL : 7.488 3193 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 330 THROUGH 374 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.0126 3.7099 -6.8696 REMARK 3 T TENSOR REMARK 3 T11: 0.4511 T22: 0.3915 REMARK 3 T33: 0.5802 T12: 0.0970 REMARK 3 T13: -0.0827 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 2.3611 L22: 0.9846 REMARK 3 L33: 1.5252 L12: -0.0775 REMARK 3 L13: -0.3080 L23: 0.2787 REMARK 3 S TENSOR REMARK 3 S11: 0.0719 S12: 0.5434 S13: 0.2910 REMARK 3 S21: -0.2831 S22: -0.0861 S23: 0.6016 REMARK 3 S31: 0.0016 S32: -0.3490 S33: -0.0226 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 375 THROUGH 433 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.8997 6.1576 7.2482 REMARK 3 T TENSOR REMARK 3 T11: 0.5692 T22: 0.3634 REMARK 3 T33: 0.5639 T12: -0.1263 REMARK 3 T13: 0.0807 T23: -0.1560 REMARK 3 L TENSOR REMARK 3 L11: 1.2287 L22: 0.5021 REMARK 3 L33: 0.6010 L12: -0.1331 REMARK 3 L13: 0.7609 L23: 0.0160 REMARK 3 S TENSOR REMARK 3 S11: 0.4671 S12: -0.3721 S13: 0.3657 REMARK 3 S21: 0.3503 S22: -0.4506 S23: 0.4275 REMARK 3 S31: 0.2567 S32: -0.2932 S33: -0.0269 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 434 THROUGH 538 ) REMARK 3 ORIGIN FOR THE GROUP (A): 72.5189 22.2657 21.4583 REMARK 3 T TENSOR REMARK 3 T11: 0.4386 T22: 0.3686 REMARK 3 T33: 0.4648 T12: -0.1737 REMARK 3 T13: 0.1513 T23: -0.1173 REMARK 3 L TENSOR REMARK 3 L11: 0.4598 L22: 1.0065 REMARK 3 L33: 2.0893 L12: -0.6794 REMARK 3 L13: 0.0091 L23: 0.4664 REMARK 3 S TENSOR REMARK 3 S11: 0.1608 S12: 0.0259 S13: 0.0723 REMARK 3 S21: -0.1859 S22: 0.2816 S23: -0.3748 REMARK 3 S31: -0.0859 S32: 0.1719 S33: -0.3671 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 539 THROUGH 758 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.4746 26.3010 45.1694 REMARK 3 T TENSOR REMARK 3 T11: 0.1986 T22: 0.2403 REMARK 3 T33: 0.1948 T12: 0.0714 REMARK 3 T13: 0.0003 T23: 0.0371 REMARK 3 L TENSOR REMARK 3 L11: 2.3469 L22: 1.1717 REMARK 3 L33: 3.7320 L12: 0.2818 REMARK 3 L13: -2.1070 L23: -0.0051 REMARK 3 S TENSOR REMARK 3 S11: 0.0963 S12: 0.3704 S13: 0.1964 REMARK 3 S21: -0.1656 S22: 0.1031 S23: -0.0202 REMARK 3 S31: -0.3588 S32: -0.6279 S33: -0.1116 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 97 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.6492 17.2399 30.3912 REMARK 3 T TENSOR REMARK 3 T11: 0.5346 T22: 0.4701 REMARK 3 T33: 0.4082 T12: -0.1069 REMARK 3 T13: 0.0853 T23: -0.0580 REMARK 3 L TENSOR REMARK 3 L11: 0.8131 L22: 1.4462 REMARK 3 L33: 1.7179 L12: -0.0572 REMARK 3 L13: -0.2663 L23: 0.3222 REMARK 3 S TENSOR REMARK 3 S11: -0.2616 S12: 0.3163 S13: -0.3420 REMARK 3 S21: -0.3041 S22: 0.1570 S23: 0.0602 REMARK 3 S31: 0.8497 S32: -0.2703 S33: 0.1553 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Q9F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1200013502. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70950 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 46.161 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.5900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.00 REMARK 200 R MERGE FOR SHELL (I) : 1.00000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.875 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5JQY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM CHLORIDE 0.1 M TRIS-HCL REMARK 280 8.0 20 % W/V PEG 6000, PH 8.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.90400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.45000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.77050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.45000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.90400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.77050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP B 86 REMARK 465 GLY B 87 REMARK 465 ASP B 88 REMARK 465 GLN B 89 REMARK 465 SER B 90 REMARK 465 GLU B 91 REMARK 465 THR B 92 REMARK 465 SER B 93 REMARK 465 PRO B 94 REMARK 465 SER B 95 REMARK 465 GLN B 96 REMARK 465 GLU B 117 REMARK 465 GLY B 118 REMARK 465 LYS B 119 REMARK 465 ASN B 120 REMARK 465 SER B 121 REMARK 465 GLU B 122 REMARK 465 LEU B 123 REMARK 465 PHE B 124 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 330 CG CD CE NZ REMARK 470 LYS A 332 CE NZ REMARK 470 LYS A 356 CD CE NZ REMARK 470 ILE A 357 CD1 REMARK 470 LYS A 391 CG CD CE NZ REMARK 470 GLN A 448 CG CD OE1 NE2 REMARK 470 GLU A 548 OE1 OE2 REMARK 470 LEU A 549 CG CD1 CD2 REMARK 470 LYS A 552 CG CD CE NZ REMARK 470 LYS A 579 CD CE NZ REMARK 470 LYS A 697 CD CE NZ REMARK 470 GLU B 114 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH12 ARG A 735 O4 OGA A 902 1.38 REMARK 500 HZ1 LYS A 653 O HOH A 1003 1.45 REMARK 500 HG1 THR A 708 O HOH A 1001 1.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 583 56.39 -91.00 REMARK 500 ALA A 608 49.35 -148.09 REMARK 500 ALA A 608 49.35 -144.28 REMARK 500 ALA A 705 -120.38 50.98 REMARK 500 ALA A 705 -119.99 50.98 REMARK 500 GLN B 98 16.34 53.52 REMARK 500 LYS B 102 -62.81 -90.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 901 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 725 NE2 REMARK 620 2 OGA A 902 O1 103.3 REMARK 620 3 OGA A 902 O1 99.5 6.8 REMARK 620 4 OGA A 902 O2' 95.1 78.1 84.0 REMARK 620 5 OGA A 902 O2' 95.8 76.3 82.2 1.9 REMARK 620 6 HOH A1065 O 90.3 84.6 78.9 162.7 160.8 REMARK 620 7 HOH A1198 O 169.2 86.3 90.5 82.0 81.6 95.5 REMARK 620 8 HOH A1259 O 88.5 163.9 170.4 90.1 91.8 106.5 81.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OGA A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 905 DBREF 6Q9F A 330 758 UNP Q12797 ASPH_HUMAN 330 758 DBREF 6Q9F B 86 124 UNP P00742 FA10_HUMAN 86 124 SEQADV 6Q9F ALA A 679 UNP Q12797 HIS 679 ENGINEERED MUTATION SEQADV 6Q9F SER B 90 UNP P00742 CYS 90 ENGINEERED MUTATION SEQADV 6Q9F SER B 95 UNP P00742 CYS 95 ENGINEERED MUTATION SEQADV 6Q9F SER B 112 UNP P00742 CYS 112 ENGINEERED MUTATION SEQADV 6Q9F SER B 121 UNP P00742 CYS 121 ENGINEERED MUTATION SEQRES 1 A 429 LYS PRO LYS LEU LEU ASN LYS PHE ASP LYS THR ILE LYS SEQRES 2 A 429 ALA GLU LEU ASP ALA ALA GLU LYS LEU ARG LYS ARG GLY SEQRES 3 A 429 LYS ILE GLU GLU ALA VAL ASN ALA PHE LYS GLU LEU VAL SEQRES 4 A 429 ARG LYS TYR PRO GLN SER PRO ARG ALA ARG TYR GLY LYS SEQRES 5 A 429 ALA GLN CYS GLU ASP ASP LEU ALA GLU LYS ARG ARG SER SEQRES 6 A 429 ASN GLU VAL LEU ARG GLY ALA ILE GLU THR TYR GLN GLU SEQRES 7 A 429 VAL ALA SER LEU PRO ASP VAL PRO ALA ASP LEU LEU LYS SEQRES 8 A 429 LEU SER LEU LYS ARG ARG SER ASP ARG GLN GLN PHE LEU SEQRES 9 A 429 GLY HIS MET ARG GLY SER LEU LEU THR LEU GLN ARG LEU SEQRES 10 A 429 VAL GLN LEU PHE PRO ASN ASP THR SER LEU LYS ASN ASP SEQRES 11 A 429 LEU GLY VAL GLY TYR LEU LEU ILE GLY ASP ASN ASP ASN SEQRES 12 A 429 ALA LYS LYS VAL TYR GLU GLU VAL LEU SER VAL THR PRO SEQRES 13 A 429 ASN ASP GLY PHE ALA LYS VAL HIS TYR GLY PHE ILE LEU SEQRES 14 A 429 LYS ALA GLN ASN LYS ILE ALA GLU SER ILE PRO TYR LEU SEQRES 15 A 429 LYS GLU GLY ILE GLU SER GLY ASP PRO GLY THR ASP ASP SEQRES 16 A 429 GLY ARG PHE TYR PHE HIS LEU GLY ASP ALA MET GLN ARG SEQRES 17 A 429 VAL GLY ASN LYS GLU ALA TYR LYS TRP TYR GLU LEU GLY SEQRES 18 A 429 HIS LYS ARG GLY HIS PHE ALA SER VAL TRP GLN ARG SER SEQRES 19 A 429 LEU TYR ASN VAL ASN GLY LEU LYS ALA GLN PRO TRP TRP SEQRES 20 A 429 THR PRO LYS GLU THR GLY TYR THR GLU LEU VAL LYS SER SEQRES 21 A 429 LEU GLU ARG ASN TRP LYS LEU ILE ARG ASP GLU GLY LEU SEQRES 22 A 429 ALA VAL MET ASP LYS ALA LYS GLY LEU PHE LEU PRO GLU SEQRES 23 A 429 ASP GLU ASN LEU ARG GLU LYS GLY ASP TRP SER GLN PHE SEQRES 24 A 429 THR LEU TRP GLN GLN GLY ARG ARG ASN GLU ASN ALA CYS SEQRES 25 A 429 LYS GLY ALA PRO LYS THR CYS THR LEU LEU GLU LYS PHE SEQRES 26 A 429 PRO GLU THR THR GLY CYS ARG ARG GLY GLN ILE LYS TYR SEQRES 27 A 429 SER ILE MET HIS PRO GLY THR HIS VAL TRP PRO ALA THR SEQRES 28 A 429 GLY PRO THR ASN CYS ARG LEU ARG MET HIS LEU GLY LEU SEQRES 29 A 429 VAL ILE PRO LYS GLU GLY CYS LYS ILE ARG CYS ALA ASN SEQRES 30 A 429 GLU THR LYS THR TRP GLU GLU GLY LYS VAL LEU ILE PHE SEQRES 31 A 429 ASP ASP SER PHE GLU HIS GLU VAL TRP GLN ASP ALA SER SEQRES 32 A 429 SER PHE ARG LEU ILE PHE ILE VAL ASP VAL TRP HIS PRO SEQRES 33 A 429 GLU LEU THR PRO GLN GLN ARG ARG SER LEU PRO ALA ILE SEQRES 1 B 39 ASP GLY ASP GLN SER GLU THR SER PRO SER GLN ASN GLN SEQRES 2 B 39 GLY LYS CYS LYS ASP GLY LEU GLY GLU TYR THR CYS THR SEQRES 3 B 39 SER LEU GLU GLY PHE GLU GLY LYS ASN SER GLU LEU PHE HET MN A 901 1 HET OGA A 902 26 HET GOL A 903 14 HET GOL A 904 14 HET GOL A 905 14 HETNAM MN MANGANESE (II) ION HETNAM OGA N-OXALYLGLYCINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MN MN 2+ FORMUL 4 OGA C4 H5 N O5 FORMUL 5 GOL 3(C3 H8 O3) FORMUL 8 HOH *394(H2 O) HELIX 1 AA1 ASN A 335 ILE A 341 1 7 HELIX 2 AA2 ILE A 341 ARG A 354 1 14 HELIX 3 AA3 LYS A 356 TYR A 371 1 16 HELIX 4 AA4 SER A 374 ARG A 393 1 20 HELIX 5 AA5 SER A 394 LEU A 411 1 18 HELIX 6 AA6 PRO A 415 GLY A 434 1 20 HELIX 7 AA7 HIS A 435 PHE A 450 1 16 HELIX 8 AA8 ASP A 453 ILE A 467 1 15 HELIX 9 AA9 ASP A 469 THR A 484 1 16 HELIX 10 AB1 ASP A 487 GLN A 501 1 15 HELIX 11 AB2 LYS A 503 GLY A 518 1 16 HELIX 12 AB3 ASP A 524 GLY A 539 1 16 HELIX 13 AB4 GLU A 542 ARG A 553 1 12 HELIX 14 AB5 THR A 577 GLY A 582 1 6 HELIX 15 AB6 TYR A 583 ASN A 593 1 11 HELIX 16 AB7 ASN A 593 ALA A 608 1 16 HELIX 17 AB8 LYS A 609 PHE A 612 5 4 HELIX 18 AB9 ASN A 637 LYS A 642 1 6 HELIX 19 AC1 ALA A 644 GLU A 652 1 9 HELIX 20 AC2 PHE A 654 GLY A 659 1 6 HELIX 21 AC3 THR A 748 LEU A 755 1 8 SHEET 1 AA1 7 TRP A 575 TRP A 576 0 SHEET 2 AA1 7 VAL A 716 PHE A 719 -1 O ILE A 718 N TRP A 576 SHEET 3 AA1 7 ARG A 686 VAL A 694 -1 N ARG A 688 O PHE A 719 SHEET 4 AA1 7 ARG A 735 TRP A 743 -1 O VAL A 742 N LEU A 687 SHEET 5 AA1 7 GLN A 664 MET A 670 -1 N LYS A 666 O ILE A 739 SHEET 6 AA1 7 TRP A 625 GLN A 632 -1 N LEU A 630 O ILE A 665 SHEET 7 AA1 7 LEU A 613 PRO A 614 -1 N LEU A 613 O GLN A 627 SHEET 1 AA2 7 TRP A 575 TRP A 576 0 SHEET 2 AA2 7 VAL A 716 PHE A 719 -1 O ILE A 718 N TRP A 576 SHEET 3 AA2 7 ARG A 686 VAL A 694 -1 N ARG A 688 O PHE A 719 SHEET 4 AA2 7 ARG A 735 TRP A 743 -1 O VAL A 742 N LEU A 687 SHEET 5 AA2 7 GLN A 664 MET A 670 -1 N LYS A 666 O ILE A 739 SHEET 6 AA2 7 TRP A 625 GLN A 632 -1 N LEU A 630 O ILE A 665 SHEET 7 AA2 7 ARG A 635 ARG A 636 -1 O ARG A 635 N GLN A 632 SHEET 1 AA3 5 ARG A 620 LYS A 622 0 SHEET 2 AA3 5 THR A 674 ALA A 679 -1 O HIS A 675 N GLU A 621 SHEET 3 AA3 5 HIS A 725 GLN A 729 -1 O VAL A 727 N VAL A 676 SHEET 4 AA3 5 CYS A 700 CYS A 704 -1 N ARG A 703 O GLU A 726 SHEET 5 AA3 5 GLU A 707 LYS A 709 -1 O LYS A 709 N ILE A 702 SSBOND 1 CYS A 641 CYS A 648 1555 1555 2.09 SSBOND 2 CYS B 101 CYS B 110 1555 1555 2.06 LINK NE2 HIS A 725 MN MN A 901 1555 1555 2.18 LINK MN MN A 901 O1 AOGA A 902 1555 1555 2.07 LINK MN MN A 901 O1 BOGA A 902 1555 1555 2.11 LINK MN MN A 901 O2'AOGA A 902 1555 1555 2.35 LINK MN MN A 901 O2'BOGA A 902 1555 1555 2.32 LINK MN MN A 901 O HOH A1065 1555 1555 2.10 LINK MN MN A 901 O HOH A1198 1555 1555 2.16 LINK MN MN A 901 O HOH A1259 1555 1555 2.19 SITE 1 AC1 5 HIS A 725 OGA A 902 HOH A1065 HOH A1198 SITE 2 AC1 5 HOH A1259 SITE 1 AC2 16 TRP A 625 SER A 668 MET A 670 ARG A 688 SITE 2 AC2 16 HIS A 690 PHE A 719 ASP A 721 HIS A 725 SITE 3 AC2 16 VAL A 727 ARG A 735 ILE A 737 ILE A 739 SITE 4 AC2 16 MN A 901 HOH A1065 HOH A1198 HOH A1208 SITE 1 AC3 6 LYS A 595 LYS A 609 SER A 626 HIS A 671 SITE 2 AC3 6 HOH A1005 HOH A1007 SITE 1 AC4 6 SER A 455 ASN A 458 ASP A 459 PHE A 489 SITE 2 AC4 6 HOH A1107 HOH A1137 SITE 1 AC5 8 ALA A 500 ASP A 616 ASN A 618 HOH A1015 SITE 2 AC5 8 HOH A1042 HOH A1342 GLY B 106 GLU B 107 CRYST1 49.808 91.541 122.900 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020077 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010924 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008137 0.00000